Wall clock time and date at job start Wed Apr 1 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 117.00075 * 2 1 4 4 O 1.21532 * 119.99500 * 0.02562 * 3 2 1 5 5 C 1.47273 * 119.99886 * 180.02562 * 3 2 1 6 6 C 1.41133 * 126.40790 * 90.00378 * 5 3 2 7 7 C 1.50699 * 126.58903 * 359.97438 * 6 5 3 8 8 C 1.37817 * 106.82217 * 179.97438 * 6 5 3 9 9 C 1.41556 * 125.98071 * 179.97438 * 8 6 5 10 10 C 1.50699 * 120.00240 * 180.02562 * 9 8 6 11 11 O 1.21418 * 119.99555 * 0.02562 * 9 8 6 12 12 N 1.38006 * 108.04500 * 359.74836 * 8 6 5 13 13 H 0.96995 * 125.37079 * 180.26288 * 12 8 6 14 14 C 1.34112 * 109.26426 * 0.42350 * 12 8 6 15 15 C 1.50699 * 125.65825 * 179.83376 * 14 12 8 16 16 C 1.50699 * 109.47103 * 264.69832 * 15 14 12 17 17 O 1.21290 * 120.00157 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99556 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99425 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00341 * 17.72219 * 19 18 16 21 21 C 1.38954 * 119.99562 * 197.71754 * 19 18 16 22 22 N 1.31408 * 120.00015 * 21.40124 * 21 19 18 23 23 Si 1.86798 * 119.99817 * 201.40191 * 21 19 18 24 24 H 1.48496 * 109.47570 * 90.00186 * 23 21 19 25 25 H 1.48498 * 109.46974 * 210.00322 * 23 21 19 26 26 H 1.48504 * 109.47301 * 329.99750 * 23 21 19 27 27 C 1.46497 * 120.00242 * 359.97438 * 18 16 15 28 28 C 1.47204 * 109.46776 * 84.23708 * 27 18 16 29 29 N 5.13905 * 80.48706 * 71.54443 * 2 1 3 30 30 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47082 * 299.99415 * 1 2 3 32 32 H 1.09000 * 109.47354 * 59.99966 * 1 2 3 33 33 H 1.09000 * 109.47755 * 89.99351 * 7 6 5 34 34 H 1.09003 * 109.47067 * 210.00054 * 7 6 5 35 35 H 1.09009 * 109.47265 * 329.99367 * 7 6 5 36 36 H 1.08995 * 109.47036 * 59.99280 * 10 9 8 37 37 H 1.08997 * 109.47316 * 180.02562 * 10 9 8 38 38 H 1.09010 * 109.46926 * 300.00167 * 10 9 8 39 39 H 1.09005 * 109.47091 * 24.69733 * 15 14 12 40 40 H 1.08998 * 109.47170 * 144.68994 * 15 14 12 41 41 H 0.97004 * 119.99761 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.46956 * 204.23297 * 27 18 16 43 43 H 1.08997 * 109.47245 * 324.23330 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4018 2.2199 0.0005 5 6 3.5345 1.2777 -0.0006 6 6 4.3706 1.3219 -1.1367 7 6 3.9300 1.2987 -2.5777 8 6 5.6674 1.3902 -0.6753 9 6 6.8330 1.4512 -1.4761 10 6 8.1909 1.5223 -0.8264 11 8 6.7387 1.4462 -2.6867 12 7 5.6306 1.3940 0.7043 13 1 6.4050 1.4398 1.2865 14 6 4.3554 1.3210 1.1131 15 6 3.8926 1.2965 2.5470 16 6 3.6952 -0.1314 2.9868 17 8 3.9088 -1.0397 2.2120 18 7 3.2803 -0.3989 4.2410 19 6 3.1002 -1.6978 4.6409 20 1 3.5492 -2.5032 4.0786 21 6 2.3401 -1.9781 5.7698 22 7 1.4659 -1.1002 6.2078 23 14 2.5610 -3.6028 6.6647 24 1 3.6056 -3.4545 7.7096 25 1 1.2778 -3.9964 7.3000 26 1 2.9751 -4.6494 5.6959 27 6 3.0217 0.6982 5.1767 28 6 1.6571 1.2095 4.9682 29 7 0.6027 1.6045 4.8077 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.7695 2.3193 -2.9252 34 1 4.7006 0.8247 -3.1857 35 1 3.0010 0.7350 -2.6646 36 1 8.3434 0.6392 -0.2060 37 1 8.9607 1.5630 -1.5969 38 1 8.2505 2.4167 -0.2061 39 1 4.6431 1.7709 3.1793 40 1 2.9501 1.8371 2.6339 41 1 0.9350 -1.2961 6.9957 42 1 3.1211 0.3345 6.1994 43 1 3.7402 1.4996 5.0046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299606062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:48 Heat of formation + Delta-G solvation = -73.088681 kcal Electronic energy + Delta-G solvation = -31177.156667 eV Core-core repulsion = 26803.474335 eV Total energy + Delta-G solvation = -4373.682332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81689 -39.74082 -39.10627 -38.56628 -36.00613 -35.89539 -34.45182 -33.12341 -32.41037 -31.79867 -30.16393 -28.74938 -27.57014 -27.21630 -26.66125 -24.76831 -23.20605 -21.66570 -19.71115 -19.42133 -19.17560 -18.07835 -17.38979 -17.08371 -16.71606 -16.42367 -16.08822 -15.83606 -15.46363 -14.99124 -14.86164 -14.70792 -14.25928 -14.01484 -13.82696 -13.32508 -13.24214 -13.10797 -12.95386 -12.87267 -12.60690 -12.54944 -12.39695 -12.27415 -12.24100 -11.94745 -11.79658 -11.66082 -11.53812 -11.36440 -11.22883 -10.67107 -10.47942 -10.43736 -10.42450 -10.39850 -9.79073 -9.37744 -8.86465 -8.84026 -8.18111 -8.13811 -6.61243 -4.11302 0.99245 2.11891 2.39372 2.89308 2.96117 3.01378 3.15915 3.19600 3.32266 3.42186 3.64626 3.86347 4.02701 4.15036 4.50898 4.70352 4.76189 4.82326 4.93620 4.99388 5.05505 5.14747 5.20892 5.29632 5.37429 5.41861 5.43588 5.49137 5.58777 5.69070 5.78032 5.81780 5.84334 5.91680 6.05329 6.18095 6.36804 6.50651 6.66112 6.74928 7.22751 7.37329 7.51955 7.73842 8.05104 8.14604 8.63667 8.86568 9.05269 9.56316 10.44627 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003751 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.186802 B = 7462.865341 C = 8470.073216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.549 3.451 4 O -0.506 6.506 5 C -0.206 4.206 6 C -0.010 4.010 7 C -0.097 4.097 8 C -0.105 4.105 9 C 0.421 3.579 10 C -0.206 4.206 11 O -0.464 6.464 12 N -0.508 5.508 13 H 0.424 0.576 14 C 0.174 3.826 15 C -0.094 4.094 16 C 0.454 3.546 17 O -0.551 6.551 18 N -0.438 5.438 19 C -0.313 4.313 20 H 0.111 0.889 21 C 0.034 3.966 22 N -0.875 5.875 23 Si 0.928 3.072 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.268 1.268 27 C 0.219 3.781 28 C 0.239 3.761 29 N -0.464 5.464 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.275 0.725 42 H 0.130 0.870 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 5.981 -6.014 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.251 6.251 3 C 0.392 3.608 4 O -0.395 6.395 5 C -0.213 4.213 6 C -0.017 4.017 7 C -0.154 4.154 8 C -0.212 4.212 9 C 0.303 3.697 10 C -0.263 4.263 11 O -0.341 6.341 12 N -0.103 5.103 13 H 0.262 0.738 14 C 0.049 3.951 15 C -0.135 4.135 16 C 0.241 3.759 17 O -0.432 6.432 18 N -0.159 5.159 19 C -0.440 4.440 20 H 0.128 0.872 21 C -0.170 4.170 22 N -0.513 5.513 23 Si 0.754 3.246 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.193 1.193 27 C 0.091 3.909 28 C -0.080 4.080 29 N -0.144 5.144 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.305 6.380 -7.089 12.646 hybrid contribution 0.274 -0.871 1.389 1.662 sum 8.579 5.509 -5.700 11.681 Atomic orbital electron populations 1.23276 0.76623 1.03770 1.02188 1.86774 1.22882 1.32292 1.83168 1.20259 0.87823 0.81435 0.71307 1.90828 1.66806 1.36324 1.45501 1.18197 0.89751 1.19982 0.93353 1.20013 0.90049 0.96739 0.94943 1.20483 1.02016 1.02623 0.90261 1.19416 0.96179 1.23079 0.82533 1.19904 0.89050 0.72387 0.88357 1.22311 0.96440 1.04097 1.03471 1.90577 1.89108 1.38922 1.15533 1.41370 1.07306 1.55097 1.06506 0.73753 1.19951 0.83024 0.97768 0.94378 1.20590 1.03845 0.99502 0.89573 1.19624 0.85211 0.88801 0.82306 1.90635 1.54728 1.46458 1.51340 1.43615 1.58063 1.06018 1.08193 1.19733 1.31211 0.82865 1.10201 0.87182 1.25289 0.93875 0.99643 0.98237 1.69857 1.19886 1.36839 1.24727 0.85883 0.77724 0.81483 0.79462 1.20104 1.21055 1.19272 1.18785 0.84412 0.88987 0.98681 1.29343 0.95436 0.90852 0.92359 1.80990 1.11505 1.12582 1.09340 0.88087 0.91792 0.92209 0.90676 0.89387 0.91700 0.89053 0.89385 0.89297 0.87859 0.87456 0.91485 0.85201 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.57 101.05 1.07 1.63 16 2 O -0.34 -6.60 10.58 -40.65 -0.43 -7.03 16 3 C 0.55 10.72 7.21 34.40 0.25 10.96 16 4 O -0.51 -10.47 16.90 -19.29 -0.33 -10.80 16 5 C -0.21 -3.67 6.00 -105.06 -0.63 -4.30 16 6 C -0.01 -0.16 6.25 -103.68 -0.65 -0.81 16 7 C -0.10 -1.37 9.61 36.01 0.35 -1.02 16 8 C -0.10 -1.43 6.76 -83.97 -0.57 -2.00 16 9 C 0.42 5.09 7.06 -33.04 -0.23 4.85 16 10 C -0.21 -1.55 9.75 36.01 0.35 -1.20 16 11 O -0.46 -6.83 15.34 5.44 0.08 -6.74 16 12 N -0.51 -6.25 5.87 -6.60 -0.04 -6.29 16 13 H 0.42 3.50 8.62 -40.82 -0.35 3.14 16 14 C 0.17 2.75 5.68 -81.53 -0.46 2.28 16 15 C -0.09 -1.47 4.61 -29.04 -0.13 -1.60 16 16 C 0.45 9.31 7.56 -10.98 -0.08 9.22 16 17 O -0.55 -13.29 15.68 5.55 0.09 -13.21 16 18 N -0.44 -9.32 2.60 -117.94 -0.31 -9.63 16 19 C -0.31 -7.51 9.32 -14.93 -0.14 -7.65 16 20 H 0.11 2.82 7.39 -52.49 -0.39 2.43 16 21 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 22 N -0.87 -20.88 9.48 55.50 0.53 -20.36 16 23 Si 0.93 18.64 29.60 -169.99 -5.03 13.61 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 27 C 0.22 3.92 4.91 -6.83 -0.03 3.88 16 28 C 0.24 4.98 12.95 -20.71 -0.27 4.71 16 29 N -0.46 -10.67 18.55 42.21 0.78 -9.89 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.22 6.41 -51.93 -0.33 0.89 16 35 H 0.06 0.90 8.05 -51.92 -0.42 0.48 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.10 1.11 7.42 -51.93 -0.39 0.72 16 40 H 0.11 1.78 7.41 -51.93 -0.38 1.40 16 41 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 42 H 0.13 2.38 6.46 -51.93 -0.34 2.05 16 43 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -34.37 382.74 -5.19 -39.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.04 Total: 5.33 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: -1.27 Total: 19.67 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.96 Total: -46.16 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.59 Total: -37.78 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.37 -5.19 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299606062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.522 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds