Wall clock time and date at job start Wed Apr 1 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 117.00075 * 2 1 4 4 O 1.21532 * 119.99500 * 0.02562 * 3 2 1 5 5 C 1.47273 * 119.99886 * 180.02562 * 3 2 1 6 6 C 1.41133 * 126.40790 * 90.00378 * 5 3 2 7 7 C 1.50699 * 126.58903 * 359.97438 * 6 5 3 8 8 C 1.37817 * 106.82217 * 179.97438 * 6 5 3 9 9 C 1.41556 * 125.98071 * 179.97438 * 8 6 5 10 10 C 1.50699 * 120.00240 * 180.02562 * 9 8 6 11 11 O 1.21418 * 119.99555 * 0.02562 * 9 8 6 12 12 N 1.38006 * 108.04500 * 359.74836 * 8 6 5 13 13 H 0.96995 * 125.37079 * 180.26288 * 12 8 6 14 14 C 1.34112 * 109.26426 * 0.42350 * 12 8 6 15 15 C 1.50699 * 125.65825 * 179.83376 * 14 12 8 16 16 C 1.50699 * 109.47103 * 264.69832 * 15 14 12 17 17 O 1.21290 * 120.00157 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99556 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99425 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00341 * 17.72219 * 19 18 16 21 21 C 1.38954 * 119.99562 * 197.71754 * 19 18 16 22 22 N 1.31408 * 120.00015 * 21.40124 * 21 19 18 23 23 Si 1.86798 * 119.99817 * 201.40191 * 21 19 18 24 24 H 1.48496 * 109.47570 * 90.00186 * 23 21 19 25 25 H 1.48498 * 109.46974 * 210.00322 * 23 21 19 26 26 H 1.48504 * 109.47301 * 329.99750 * 23 21 19 27 27 C 1.46497 * 120.00242 * 359.97438 * 18 16 15 28 28 C 1.47204 * 109.46776 * 84.23708 * 27 18 16 29 29 N 5.13905 * 80.48706 * 71.54443 * 2 1 3 30 30 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47082 * 299.99415 * 1 2 3 32 32 H 1.09000 * 109.47354 * 59.99966 * 1 2 3 33 33 H 1.09000 * 109.47755 * 89.99351 * 7 6 5 34 34 H 1.09003 * 109.47067 * 210.00054 * 7 6 5 35 35 H 1.09009 * 109.47265 * 329.99367 * 7 6 5 36 36 H 1.08995 * 109.47036 * 59.99280 * 10 9 8 37 37 H 1.08997 * 109.47316 * 180.02562 * 10 9 8 38 38 H 1.09010 * 109.46926 * 300.00167 * 10 9 8 39 39 H 1.09005 * 109.47091 * 24.69733 * 15 14 12 40 40 H 1.08998 * 109.47170 * 144.68994 * 15 14 12 41 41 H 0.97004 * 119.99761 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.46956 * 204.23297 * 27 18 16 43 43 H 1.08997 * 109.47245 * 324.23330 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4018 2.2199 0.0005 5 6 3.5345 1.2777 -0.0006 6 6 4.3706 1.3219 -1.1367 7 6 3.9300 1.2987 -2.5777 8 6 5.6674 1.3902 -0.6753 9 6 6.8330 1.4512 -1.4761 10 6 8.1909 1.5223 -0.8264 11 8 6.7387 1.4462 -2.6867 12 7 5.6306 1.3940 0.7043 13 1 6.4050 1.4398 1.2865 14 6 4.3554 1.3210 1.1131 15 6 3.8926 1.2965 2.5470 16 6 3.6952 -0.1314 2.9868 17 8 3.9088 -1.0397 2.2120 18 7 3.2803 -0.3989 4.2410 19 6 3.1002 -1.6978 4.6409 20 1 3.5492 -2.5032 4.0786 21 6 2.3401 -1.9781 5.7698 22 7 1.4659 -1.1002 6.2078 23 14 2.5610 -3.6028 6.6647 24 1 3.6056 -3.4545 7.7096 25 1 1.2778 -3.9964 7.3000 26 1 2.9751 -4.6494 5.6959 27 6 3.0217 0.6982 5.1767 28 6 1.6571 1.2095 4.9682 29 7 0.6027 1.6045 4.8077 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.7695 2.3193 -2.9252 34 1 4.7006 0.8247 -3.1857 35 1 3.0010 0.7350 -2.6646 36 1 8.3434 0.6392 -0.2060 37 1 8.9607 1.5630 -1.5969 38 1 8.2505 2.4167 -0.2061 39 1 4.6431 1.7709 3.1793 40 1 2.9501 1.8371 2.6339 41 1 0.9350 -1.2961 6.9957 42 1 3.1211 0.3345 6.1994 43 1 3.7402 1.4996 5.0046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299606062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:47 Heat of formation + Delta-G solvation = -95.311908 kcal Electronic energy + Delta-G solvation = -31178.120339 eV Core-core repulsion = 26803.474335 eV Total energy + Delta-G solvation = -4374.646004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.96489 -41.16918 -40.59332 -39.72928 -37.56945 -37.50498 -36.16032 -34.29419 -33.89150 -33.21330 -31.06500 -30.03857 -29.11452 -28.49500 -27.76404 -26.38990 -24.50298 -22.87565 -21.08471 -20.81357 -20.30986 -19.75600 -18.60317 -18.41875 -18.27309 -17.93724 -17.46748 -17.16009 -16.65339 -16.31705 -16.12308 -16.06896 -15.62200 -15.39513 -14.96993 -14.72557 -14.64374 -14.53207 -14.30952 -14.15844 -13.92636 -13.71934 -13.67320 -13.41579 -13.24095 -13.18793 -13.10025 -13.05260 -12.97967 -12.84619 -12.72257 -12.29980 -12.12823 -12.06440 -11.89644 -11.87695 -11.09296 -10.79045 -10.50798 -10.02396 -9.91013 -9.32129 -8.38268 -5.93709 -0.05852 0.84378 0.94304 1.40807 1.51393 1.60173 1.75515 1.78699 1.93845 2.05039 2.13734 2.26060 2.37851 3.01632 3.10645 3.26599 3.42218 3.59446 3.75604 3.79034 3.95967 4.03829 4.14152 4.16856 4.18474 4.27942 4.37745 4.46561 4.54280 4.62314 4.65710 4.69063 4.70601 4.89487 4.93131 4.98506 5.19085 5.27304 5.35898 5.52207 5.57978 6.02521 6.32181 6.40593 6.57761 6.58275 7.01988 7.13765 7.35251 7.90394 8.65014 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003751 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.186802 B = 7462.865341 C = 8470.073216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.548 3.452 4 O -0.529 6.529 5 C -0.239 4.239 6 C -0.041 4.041 7 C -0.092 4.092 8 C -0.092 4.092 9 C 0.421 3.579 10 C -0.198 4.198 11 O -0.493 6.493 12 N -0.480 5.480 13 H 0.445 0.555 14 C 0.164 3.836 15 C -0.084 4.084 16 C 0.454 3.546 17 O -0.593 6.593 18 N -0.450 5.450 19 C -0.333 4.333 20 H 0.085 0.915 21 C 0.008 3.992 22 N -0.892 5.892 23 Si 0.983 3.017 24 H -0.258 1.258 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.217 3.783 28 C 0.252 3.748 29 N -0.510 5.510 30 H 0.123 0.877 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.163 0.837 40 H 0.099 0.901 41 H 0.273 0.727 42 H 0.128 0.872 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.748 6.828 -5.108 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.392 3.608 4 O -0.419 6.419 5 C -0.246 4.246 6 C -0.048 4.048 7 C -0.149 4.149 8 C -0.201 4.201 9 C 0.304 3.696 10 C -0.255 4.255 11 O -0.372 6.372 12 N -0.076 5.076 13 H 0.289 0.711 14 C 0.037 3.963 15 C -0.125 4.125 16 C 0.243 3.757 17 O -0.476 6.476 18 N -0.171 5.171 19 C -0.461 4.461 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.531 5.531 23 Si 0.808 3.192 24 H -0.182 1.182 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.090 3.910 28 C -0.065 4.065 29 N -0.191 5.191 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.181 0.819 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.146 0.854 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.114 7.245 -6.148 14.623 hybrid contribution -0.592 -1.168 1.011 1.654 sum 10.523 6.077 -5.137 13.192 Atomic orbital electron populations 1.23497 0.75164 1.05340 1.02330 1.86764 1.24639 1.32859 1.83100 1.20682 0.88742 0.80994 0.70406 1.90791 1.67560 1.36792 1.46728 1.18411 0.89089 1.21943 0.95153 1.20311 0.91046 0.98314 0.95174 1.20443 1.01657 1.02958 0.89841 1.19743 0.96104 1.21087 0.83166 1.20551 0.90318 0.70915 0.87793 1.22334 0.92928 1.06254 1.03960 1.90576 1.89631 1.40043 1.16944 1.41251 1.06993 1.53127 1.06272 0.71100 1.19847 0.83964 0.98598 0.93910 1.20521 1.05412 0.96022 0.90511 1.20388 0.83338 0.90494 0.81516 1.90611 1.56083 1.48507 1.52430 1.43746 1.58101 1.05957 1.09248 1.19585 1.31867 0.83956 1.10665 0.89762 1.25815 0.93301 1.02015 0.98306 1.69944 1.20246 1.38012 1.24872 0.85076 0.77542 0.78160 0.78437 1.18235 1.21749 1.20387 1.19228 0.84122 0.89721 0.97881 1.29994 0.95834 0.89694 0.91012 1.80995 1.12971 1.14277 1.10850 0.85894 0.93447 0.90234 0.89999 0.89369 0.92329 0.87261 0.88753 0.86314 0.81911 0.88326 0.91661 0.85419 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.57 113.37 1.20 2.18 16 2 O -0.36 -14.55 10.58 -56.71 -0.60 -15.15 16 3 C 0.55 21.92 7.21 70.20 0.51 22.42 16 4 O -0.53 -22.48 16.90 19.73 0.33 -22.15 16 5 C -0.24 -8.48 6.00 -20.15 -0.12 -8.60 16 6 C -0.04 -1.30 6.25 -19.25 -0.12 -1.42 16 7 C -0.09 -2.64 9.61 71.24 0.68 -1.96 16 8 C -0.09 -2.33 6.76 38.89 0.26 -2.07 16 9 C 0.42 9.11 7.06 26.50 0.19 9.29 16 10 C -0.20 -2.14 9.75 71.24 0.69 -1.45 16 11 O -0.49 -13.82 15.34 -3.46 -0.05 -13.87 16 12 N -0.48 -10.31 5.87 -174.81 -1.03 -11.34 16 13 H 0.45 5.27 8.62 -92.71 -0.80 4.47 16 14 C 0.16 4.86 5.68 42.25 0.24 5.10 16 15 C -0.08 -2.40 4.61 29.10 0.13 -2.27 16 16 C 0.45 18.07 7.56 87.66 0.66 18.74 16 17 O -0.59 -28.66 15.68 -3.06 -0.05 -28.71 16 18 N -0.45 -18.63 2.60 -645.42 -1.68 -20.31 16 19 C -0.33 -16.01 9.32 84.04 0.78 -15.22 16 20 H 0.08 4.42 7.39 -2.91 -0.02 4.40 16 21 C 0.01 0.37 4.87 84.93 0.41 0.78 16 22 N -0.89 -42.27 9.48 21.66 0.21 -42.07 16 23 Si 0.98 38.01 29.60 68.60 2.03 40.04 16 24 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 25 H -0.29 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 27 C 0.22 7.26 4.91 84.58 0.42 7.67 16 28 C 0.25 10.28 12.95 89.43 1.16 11.44 16 29 N -0.51 -23.46 18.55 20.02 0.37 -23.09 16 30 H 0.12 3.36 8.14 -2.38 -0.02 3.34 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.47 6.41 -2.39 -0.02 2.46 16 35 H 0.06 1.69 8.05 -2.38 -0.02 1.67 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 38 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.16 2.58 7.42 -2.38 -0.02 2.56 16 40 H 0.10 3.10 7.41 -2.39 -0.02 3.08 16 41 H 0.27 12.65 8.31 -92.71 -0.77 11.87 16 42 H 0.13 4.42 6.46 -2.39 -0.02 4.40 16 43 H 0.15 2.97 6.68 -2.39 -0.02 2.95 16 Total: -1.00 -79.06 382.74 6.93 -72.13 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.29 Total: 19.89 kcal Atomic # 6 Polarization: 37.53 SS G_CDS: 7.10 Total: 44.63 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.13 Total: -96.80 kcal Atomic # 8 Polarization: -79.52 SS G_CDS: -0.37 Total: -79.89 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -79.06 6.93 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299606062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.182 kcal (2) G-P(sol) polarization free energy of solvation -79.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds