Wall clock time and date at job start Wed Apr 1 2020 04:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38117 * 119.95852 * 2 1 4 4 C 1.38911 * 119.91975 * 180.29706 * 3 2 1 5 5 N 1.39724 * 120.07445 * 179.69583 * 4 3 2 6 6 C 1.34774 * 120.00372 * 218.14787 * 5 4 3 7 7 O 1.21384 * 119.99751 * 6.17743 * 6 5 4 8 8 C 1.49347 * 120.00429 * 186.17238 * 6 5 4 9 9 O 1.21360 * 120.00012 * 5.14588 * 8 6 5 10 10 N 1.34781 * 119.99847 * 185.14164 * 8 6 5 11 11 C 1.46507 * 119.99673 * 174.86119 * 10 8 6 12 12 C 1.52998 * 109.47004 * 184.70591 * 11 10 8 13 13 C 1.50698 * 115.55280 * 306.10632 * 12 11 10 14 14 H 1.08006 * 119.99907 * 144.11557 * 13 12 11 15 15 C 1.37874 * 120.00388 * 324.12042 * 13 12 11 16 16 N 1.31515 * 119.99435 * 0.71957 * 15 13 12 17 17 Si 1.86789 * 120.00377 * 180.72246 * 15 13 12 18 18 H 1.48502 * 109.47499 * 89.99655 * 17 15 13 19 19 H 1.48497 * 109.47152 * 209.99607 * 17 15 13 20 20 H 1.48501 * 109.47162 * 329.99910 * 17 15 13 21 21 C 1.52998 * 117.49690 * 160.43241 * 12 11 10 22 22 C 1.52999 * 117.49471 * 91.77632 * 12 11 10 23 23 C 1.38948 * 119.84790 * 359.42857 * 4 3 2 24 24 C 1.38071 * 119.92212 * 0.26912 * 23 4 3 25 25 C 1.38264 * 119.96132 * 179.69731 * 2 1 3 26 26 N 1.48022 * 119.92838 * 0.02562 * 25 2 1 27 27 O 1.21800 * 120.00129 * 173.87813 * 26 25 2 28 28 O 1.21802 * 119.99784 * 353.87191 * 26 25 2 29 29 H 1.09003 * 109.46931 * 263.01873 * 1 2 3 30 30 H 1.08997 * 109.47685 * 23.01503 * 1 2 3 31 31 H 1.09000 * 109.47231 * 143.02329 * 1 2 3 32 32 H 1.08001 * 120.04234 * 0.02562 * 3 2 1 33 33 H 0.96999 * 120.00024 * 38.15711 * 5 4 3 34 34 H 0.96999 * 120.00259 * 354.86145 * 10 8 6 35 35 H 1.09000 * 109.46985 * 304.70879 * 11 10 8 36 36 H 1.08998 * 109.46987 * 64.71123 * 11 10 8 37 37 H 0.97001 * 119.99650 * 185.01899 * 16 15 13 38 38 H 1.09001 * 117.50229 * 0.02562 * 21 12 11 39 39 H 1.08995 * 117.49763 * 145.02548 * 21 12 11 40 40 H 1.09000 * 117.49816 * 214.98078 * 22 12 11 41 41 H 1.08999 * 117.50168 * 359.97438 * 22 12 11 42 42 H 1.07999 * 120.03664 * 180.29729 * 23 4 3 43 43 H 1.08002 * 119.95985 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1966 0.0000 4 6 3.5858 1.1957 -0.0062 5 7 4.2868 2.4044 -0.0127 6 6 5.4157 2.5249 -0.7390 7 8 5.7631 1.6240 -1.4746 8 6 6.2390 3.7669 -0.6391 9 8 5.9438 4.6277 0.1639 10 7 7.3100 3.9317 -1.4406 11 6 8.0508 5.1956 -1.4225 12 6 9.1377 5.1651 -2.4988 13 6 10.0778 3.9887 -2.4401 14 1 10.4512 3.5497 -3.3535 15 6 10.4612 3.4728 -1.2203 16 7 9.9953 3.9983 -0.1084 17 14 11.6423 2.0276 -1.1470 18 1 13.0382 2.5313 -1.0930 19 1 11.3605 1.2191 0.0662 20 1 11.4672 1.1834 -2.3562 21 6 9.7117 6.5057 -2.9613 22 6 8.7787 5.7141 -3.8810 23 6 4.2766 -0.0099 -0.0004 24 6 3.5807 -1.2024 0.0059 25 6 2.1975 -1.1978 0.0063 26 7 1.4550 -2.4783 0.0125 27 8 2.0567 -3.5319 -0.0944 28 8 0.2421 -2.4784 0.1247 29 1 -0.3633 -0.1249 1.0201 30 1 -0.3634 0.9458 -0.4018 31 1 -0.3634 -0.8210 -0.6181 32 1 1.6568 2.1319 0.0004 33 1 3.9611 3.1567 0.5057 34 1 7.5903 3.2136 -2.0294 35 1 7.3665 6.0207 -1.6204 36 1 8.5118 5.3325 -0.4444 37 1 10.3201 3.6841 0.7498 38 1 9.3153 7.4095 -2.4985 39 1 10.7692 6.5368 -3.2235 40 1 9.2228 5.2248 -4.7479 41 1 7.7681 6.0967 -4.0237 42 1 5.3566 -0.0142 -0.0004 43 1 4.1170 -2.1398 0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411482531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:53 Heat of formation + Delta-G solvation = -12.515872 kcal Electronic energy + Delta-G solvation = -29640.364827 eV Core-core repulsion = 25269.309129 eV Total energy + Delta-G solvation = -4371.055698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41686 -41.13684 -39.56642 -38.24066 -36.86910 -36.81528 -35.60966 -33.34792 -33.11743 -32.32516 -31.16599 -28.17537 -27.20075 -26.01938 -25.58442 -23.98430 -23.09905 -21.87871 -21.35510 -20.16268 -19.55450 -19.28881 -18.76425 -18.51163 -17.74855 -17.52826 -16.51049 -16.27125 -15.94221 -15.44968 -15.06360 -14.89198 -14.82572 -14.33523 -14.07988 -13.99130 -13.74079 -13.60879 -13.20449 -13.03230 -12.82573 -12.75340 -12.02471 -11.99981 -11.60613 -11.57282 -11.50751 -11.28726 -11.18334 -11.02596 -10.89136 -10.84891 -10.63794 -10.40592 -9.88066 -9.54100 -9.35943 -9.15357 -9.03544 -8.99441 -8.48950 -8.22822 -6.18671 -4.34977 -0.39724 0.61091 1.00751 1.25440 1.61427 2.26807 2.91563 3.15009 3.24088 3.26458 3.47247 3.74700 4.00829 4.02999 4.19532 4.43907 4.49979 4.68166 4.79968 4.94871 5.00770 5.19074 5.21180 5.25475 5.33106 5.53670 5.58723 5.70482 5.74285 5.83259 6.07264 6.11702 6.34666 6.34787 6.40479 6.52499 6.67736 6.72706 6.87773 7.06210 7.16329 7.38523 7.51325 7.51878 7.76338 8.07533 8.13544 8.55036 8.66489 9.29392 10.74168 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002455 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.855188 B =11401.207340 C =12484.459435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 C -0.152 4.152 4 C 0.218 3.782 5 N -0.657 5.657 6 C 0.512 3.488 7 O -0.490 6.490 8 C 0.496 3.504 9 O -0.540 6.540 10 N -0.637 5.637 11 C 0.159 3.841 12 C 0.032 3.968 13 C -0.496 4.496 14 H 0.064 0.936 15 C 0.073 3.927 16 N -0.875 5.875 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.194 4.194 22 C -0.211 4.211 23 C -0.128 4.128 24 C -0.026 4.026 25 C -0.071 4.071 26 N 0.038 4.962 27 O -0.172 6.172 28 O -0.166 6.166 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.429 0.571 34 H 0.414 0.586 35 H 0.032 0.968 36 H 0.123 0.877 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.156 0.844 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 -4.241 1.943 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 C -0.173 4.173 4 C 0.121 3.879 5 N -0.305 5.305 6 C 0.295 3.705 7 O -0.361 6.361 8 C 0.274 3.726 9 O -0.420 6.420 10 N -0.284 5.284 11 C 0.037 3.963 12 C 0.031 3.969 13 C -0.534 4.534 14 H 0.082 0.918 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.232 4.232 22 C -0.248 4.248 23 C -0.149 4.149 24 C -0.046 4.046 25 C -0.156 4.156 26 N 0.553 4.447 27 O -0.385 6.385 28 O -0.379 6.379 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.170 0.830 33 H 0.269 0.731 34 H 0.251 0.749 35 H 0.051 0.949 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.173 0.827 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.126 -3.674 2.136 15.711 hybrid contribution 0.678 -0.931 0.023 1.152 sum -14.448 -4.605 2.159 15.317 Atomic orbital electron populations 1.21310 0.88194 1.04597 1.04677 1.19600 0.97933 0.89777 0.92206 1.20877 0.91849 0.98219 1.06312 1.18074 0.90912 0.86335 0.92601 1.43422 1.25097 1.13651 1.48325 1.21109 0.80789 0.89382 0.79218 1.90811 1.68520 1.41238 1.35505 1.19337 0.83461 0.86156 0.83691 1.90726 1.71453 1.43315 1.36512 1.45661 1.25228 1.19245 1.38300 1.21357 0.90453 0.80785 1.03711 1.19197 0.95324 0.93154 0.89216 1.20561 1.27361 1.12707 0.92726 0.91790 1.25005 0.95746 0.96797 0.95576 1.69804 1.41188 1.42446 0.97671 0.86508 0.81141 0.82173 0.77863 1.20453 1.21077 1.19598 1.22947 0.98003 0.96573 1.05695 1.22982 0.98376 1.07157 0.96287 1.21174 1.01991 0.89512 1.02249 1.20882 0.90697 1.00393 0.92621 1.20896 0.92351 0.83203 1.19168 1.43507 1.01026 1.02751 0.97409 1.94549 1.70269 1.19821 1.53836 1.94451 0.96345 1.93829 1.53238 0.89181 0.90702 0.88254 0.83016 0.73149 0.74921 0.94934 0.86001 0.92521 0.91315 0.89985 0.90385 0.91260 0.82682 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.66 36.01 0.31 -0.63 16 2 C 0.01 0.06 5.88 -104.66 -0.62 -0.55 16 3 C -0.15 -1.29 9.60 -39.38 -0.38 -1.67 16 4 C 0.22 2.33 6.17 -83.75 -0.52 1.81 16 5 N -0.66 -7.59 5.30 -10.30 -0.05 -7.65 16 6 C 0.51 7.84 7.57 -11.63 -0.09 7.76 16 7 O -0.49 -8.35 14.57 5.47 0.08 -8.27 16 8 C 0.50 9.03 7.88 -11.63 -0.09 8.94 16 9 O -0.54 -10.58 16.51 5.49 0.09 -10.49 16 10 N -0.64 -12.70 5.21 -60.76 -0.32 -13.02 16 11 C 0.16 3.42 4.63 -4.04 -0.02 3.40 16 12 C 0.03 0.70 2.05 -155.66 -0.32 0.38 16 13 C -0.50 -12.01 8.28 -34.44 -0.29 -12.29 16 14 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 15 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 16 N -0.87 -21.92 10.31 55.43 0.57 -21.35 16 17 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.19 -3.93 9.96 -26.70 -0.27 -4.19 16 22 C -0.21 -4.10 9.92 -26.70 -0.26 -4.36 16 23 C -0.13 -1.46 8.65 -39.38 -0.34 -1.80 16 24 C -0.03 -0.28 9.55 -39.61 -0.38 -0.66 16 25 C -0.07 -0.79 6.83 -79.91 -0.55 -1.33 16 26 N 0.04 0.48 4.45 33.98 0.15 0.63 16 27 O -0.17 -2.34 18.46 -29.46 -0.54 -2.88 16 28 O -0.17 -2.04 15.35 -29.46 -0.45 -2.49 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.39 8.03 -51.93 -0.42 -0.03 16 31 H 0.10 0.82 5.87 -51.93 -0.31 0.51 16 32 H 0.15 0.87 8.05 -52.49 -0.42 0.45 16 33 H 0.43 4.12 8.33 -40.82 -0.34 3.78 16 34 H 0.41 8.43 7.40 -40.82 -0.30 8.13 16 35 H 0.03 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.12 2.98 5.94 -51.93 -0.31 2.67 16 37 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.16 1.91 6.83 -52.49 -0.36 1.55 16 43 H 0.16 1.48 7.62 -52.49 -0.40 1.08 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -27.43 374.94 -8.67 -36.10 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.93 Total: 12.77 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.89 Total: -3.52 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.35 Total: -41.39 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.83 Total: -24.13 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.43 -8.67 -36.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411482531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.583 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds