Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38117 * 119.95852 * 2 1 4 4 C 1.38911 * 119.91975 * 180.29706 * 3 2 1 5 5 N 1.39724 * 120.07445 * 179.69583 * 4 3 2 6 6 C 1.34774 * 120.00372 * 218.14787 * 5 4 3 7 7 O 1.21384 * 119.99751 * 6.17743 * 6 5 4 8 8 C 1.49347 * 120.00429 * 186.17238 * 6 5 4 9 9 O 1.21360 * 120.00012 * 5.14588 * 8 6 5 10 10 N 1.34781 * 119.99847 * 185.14164 * 8 6 5 11 11 C 1.46507 * 119.99673 * 174.86119 * 10 8 6 12 12 C 1.52998 * 109.47004 * 184.70591 * 11 10 8 13 13 C 1.50698 * 115.55280 * 306.10632 * 12 11 10 14 14 H 1.08006 * 119.99907 * 144.11557 * 13 12 11 15 15 C 1.37874 * 120.00388 * 324.12042 * 13 12 11 16 16 N 1.31515 * 119.99435 * 0.71957 * 15 13 12 17 17 Si 1.86789 * 120.00377 * 180.72246 * 15 13 12 18 18 H 1.48502 * 109.47499 * 89.99655 * 17 15 13 19 19 H 1.48497 * 109.47152 * 209.99607 * 17 15 13 20 20 H 1.48501 * 109.47162 * 329.99910 * 17 15 13 21 21 C 1.52998 * 117.49690 * 160.43241 * 12 11 10 22 22 C 1.52999 * 117.49471 * 91.77632 * 12 11 10 23 23 C 1.38948 * 119.84790 * 359.42857 * 4 3 2 24 24 C 1.38071 * 119.92212 * 0.26912 * 23 4 3 25 25 C 1.38264 * 119.96132 * 179.69731 * 2 1 3 26 26 N 1.48022 * 119.92838 * 0.02562 * 25 2 1 27 27 O 1.21800 * 120.00129 * 173.87813 * 26 25 2 28 28 O 1.21802 * 119.99784 * 353.87191 * 26 25 2 29 29 H 1.09003 * 109.46931 * 263.01873 * 1 2 3 30 30 H 1.08997 * 109.47685 * 23.01503 * 1 2 3 31 31 H 1.09000 * 109.47231 * 143.02329 * 1 2 3 32 32 H 1.08001 * 120.04234 * 0.02562 * 3 2 1 33 33 H 0.96999 * 120.00024 * 38.15711 * 5 4 3 34 34 H 0.96999 * 120.00259 * 354.86145 * 10 8 6 35 35 H 1.09000 * 109.46985 * 304.70879 * 11 10 8 36 36 H 1.08998 * 109.46987 * 64.71123 * 11 10 8 37 37 H 0.97001 * 119.99650 * 185.01899 * 16 15 13 38 38 H 1.09001 * 117.50229 * 0.02562 * 21 12 11 39 39 H 1.08995 * 117.49763 * 145.02548 * 21 12 11 40 40 H 1.09000 * 117.49816 * 214.98078 * 22 12 11 41 41 H 1.08999 * 117.50168 * 359.97438 * 22 12 11 42 42 H 1.07999 * 120.03664 * 180.29729 * 23 4 3 43 43 H 1.08002 * 119.95985 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1966 0.0000 4 6 3.5858 1.1957 -0.0062 5 7 4.2868 2.4044 -0.0127 6 6 5.4157 2.5249 -0.7390 7 8 5.7631 1.6240 -1.4746 8 6 6.2390 3.7669 -0.6391 9 8 5.9438 4.6277 0.1639 10 7 7.3100 3.9317 -1.4406 11 6 8.0508 5.1956 -1.4225 12 6 9.1377 5.1651 -2.4988 13 6 10.0778 3.9887 -2.4401 14 1 10.4512 3.5497 -3.3535 15 6 10.4612 3.4728 -1.2203 16 7 9.9953 3.9983 -0.1084 17 14 11.6423 2.0276 -1.1470 18 1 13.0382 2.5313 -1.0930 19 1 11.3605 1.2191 0.0662 20 1 11.4672 1.1834 -2.3562 21 6 9.7117 6.5057 -2.9613 22 6 8.7787 5.7141 -3.8810 23 6 4.2766 -0.0099 -0.0004 24 6 3.5807 -1.2024 0.0059 25 6 2.1975 -1.1978 0.0063 26 7 1.4550 -2.4783 0.0125 27 8 2.0567 -3.5319 -0.0944 28 8 0.2421 -2.4784 0.1247 29 1 -0.3633 -0.1249 1.0201 30 1 -0.3634 0.9458 -0.4018 31 1 -0.3634 -0.8210 -0.6181 32 1 1.6568 2.1319 0.0004 33 1 3.9611 3.1567 0.5057 34 1 7.5903 3.2136 -2.0294 35 1 7.3665 6.0207 -1.6204 36 1 8.5118 5.3325 -0.4444 37 1 10.3201 3.6841 0.7498 38 1 9.3153 7.4095 -2.4985 39 1 10.7692 6.5368 -3.2235 40 1 9.2228 5.2248 -4.7479 41 1 7.7681 6.0967 -4.0237 42 1 5.3566 -0.0142 -0.0004 43 1 4.1170 -2.1398 0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411482531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = -27.735055 kcal Electronic energy + Delta-G solvation = -29641.024781 eV Core-core repulsion = 25269.309129 eV Total energy + Delta-G solvation = -4371.715651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.35087 -42.26196 -40.69271 -39.54947 -38.48443 -37.77482 -36.67138 -34.86322 -34.15976 -33.89731 -32.09080 -28.99702 -28.58271 -27.58142 -26.87147 -25.20841 -23.89339 -23.05288 -22.80455 -21.37684 -21.21723 -20.20307 -19.94509 -19.64503 -18.71153 -18.63106 -18.03734 -17.59910 -17.13243 -16.79357 -16.51631 -16.22809 -15.84518 -15.58585 -15.45661 -14.96437 -14.76951 -14.65177 -14.45020 -14.28977 -13.86332 -13.67398 -13.45043 -13.36397 -12.99852 -12.93053 -12.72482 -12.65209 -12.50386 -12.33262 -12.27841 -12.05684 -11.94356 -11.73259 -11.53002 -11.00156 -10.82022 -10.67285 -10.26489 -10.20878 -9.93947 -9.85299 -8.02858 -6.23791 -1.31943 -0.16227 -0.02584 0.35881 0.43390 1.11370 1.39424 1.45132 1.51111 1.97267 2.21613 2.38342 2.52390 3.00600 3.24771 3.29467 3.41242 3.64062 3.67175 3.68704 3.98981 4.21889 4.23493 4.42237 4.49587 4.51762 4.69852 4.70649 4.74572 4.75462 4.79210 4.96948 4.98893 5.05730 5.06961 5.18259 5.26681 5.44406 5.50675 5.55176 5.58275 5.74239 5.92540 6.32964 6.34773 6.53467 6.59374 6.80795 7.03175 7.41347 8.86456 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002455 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.855188 B =11401.207340 C =12484.459435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.012 3.988 3 C -0.131 4.131 4 C 0.205 3.795 5 N -0.637 5.637 6 C 0.522 3.478 7 O -0.510 6.510 8 C 0.496 3.504 9 O -0.554 6.554 10 N -0.645 5.645 11 C 0.170 3.830 12 C 0.002 3.998 13 C -0.505 4.505 14 H 0.056 0.944 15 C 0.038 3.962 16 N -0.891 5.891 17 Si 0.943 3.057 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.270 1.270 21 C -0.192 4.192 22 C -0.189 4.189 23 C -0.139 4.139 24 C -0.029 4.029 25 C -0.082 4.082 26 N 0.038 4.962 27 O -0.214 6.214 28 O -0.147 6.147 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.190 0.810 33 H 0.440 0.560 34 H 0.411 0.589 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.259 0.741 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 -3.480 1.686 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 C -0.151 4.151 4 C 0.109 3.891 5 N -0.285 5.285 6 C 0.304 3.696 7 O -0.383 6.383 8 C 0.275 3.725 9 O -0.435 6.435 10 N -0.292 5.292 11 C 0.048 3.952 12 C 0.002 3.998 13 C -0.542 4.542 14 H 0.074 0.926 15 C -0.163 4.163 16 N -0.529 5.529 17 Si 0.769 3.231 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.195 1.195 21 C -0.230 4.230 22 C -0.226 4.226 23 C -0.160 4.160 24 C -0.049 4.049 25 C -0.166 4.166 26 N 0.550 4.450 27 O -0.417 6.417 28 O -0.367 6.367 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.282 0.718 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.159 0.841 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.178 -2.968 1.883 17.534 hybrid contribution 1.202 -1.106 0.118 1.637 sum -15.976 -4.074 2.001 16.608 Atomic orbital electron populations 1.21398 0.86301 1.05792 1.05260 1.19942 0.99221 0.89032 0.90864 1.21179 0.90634 0.99397 1.03894 1.18206 0.91844 0.85358 0.93647 1.43154 1.23697 1.14414 1.47283 1.20435 0.81491 0.87914 0.79757 1.90815 1.69340 1.41416 1.36776 1.19756 0.83111 0.86928 0.82716 1.90708 1.71779 1.44226 1.36805 1.45617 1.25893 1.18755 1.38943 1.21035 0.90472 0.81827 1.01899 1.19258 0.95934 0.93417 0.91224 1.20736 1.27658 1.13477 0.92332 0.92617 1.25490 0.96911 0.98400 0.95517 1.69952 1.41934 1.43335 0.97639 0.85782 0.79680 0.80166 0.77432 1.20498 1.21553 1.19469 1.22960 0.98084 0.96284 1.05701 1.22980 0.99142 1.05543 0.94909 1.21097 1.01506 0.90244 1.03159 1.20890 0.90885 1.00422 0.92664 1.21098 0.92498 0.83081 1.19958 1.43712 1.01066 1.03117 0.97135 1.94558 1.70395 1.20630 1.56114 1.94425 0.96532 1.93945 1.51818 0.88075 0.87852 0.89318 0.79317 0.71816 0.75310 0.94071 0.89128 0.93071 0.89918 0.90539 0.90114 0.89321 0.84098 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.66 71.24 0.62 -0.78 16 2 C 0.01 0.18 5.88 -19.89 -0.12 0.06 16 3 C -0.13 -1.75 9.60 22.40 0.21 -1.54 16 4 C 0.21 3.97 6.17 38.21 0.24 4.21 16 5 N -0.64 -13.53 5.30 -304.84 -1.62 -15.15 16 6 C 0.52 15.57 7.57 87.24 0.66 16.23 16 7 O -0.51 -17.28 14.57 -3.35 -0.05 -17.33 16 8 C 0.50 17.86 7.88 87.24 0.69 18.55 16 9 O -0.55 -21.38 16.51 -3.28 -0.05 -21.44 16 10 N -0.64 -25.75 5.21 -464.50 -2.42 -28.17 16 11 C 0.17 7.32 4.63 86.38 0.40 7.72 16 12 C 0.00 0.10 2.05 -52.93 -0.11 -0.01 16 13 C -0.50 -24.48 8.28 25.60 0.21 -24.27 16 14 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 15 C 0.04 1.89 5.29 84.65 0.45 2.34 16 16 N -0.89 -45.37 10.31 21.45 0.22 -45.15 16 17 Si 0.94 40.46 29.54 68.60 2.03 42.48 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.19 -7.56 9.96 30.62 0.30 -7.25 16 22 C -0.19 -7.00 9.92 30.62 0.30 -6.70 16 23 C -0.14 -3.09 8.65 22.40 0.19 -2.90 16 24 C -0.03 -0.61 9.55 22.25 0.21 -0.39 16 25 C -0.08 -1.69 6.83 36.40 0.25 -1.44 16 26 N 0.04 0.92 4.45 -46.40 -0.21 0.71 16 27 O -0.21 -5.93 18.46 18.89 0.35 -5.58 16 28 O -0.15 -3.40 15.35 18.88 0.29 -3.11 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.55 8.03 -2.39 -0.02 0.53 16 31 H 0.09 1.20 5.87 -2.39 -0.01 1.19 16 32 H 0.19 1.14 8.05 -2.91 -0.02 1.12 16 33 H 0.44 7.37 8.33 -92.71 -0.77 6.60 16 34 H 0.41 16.88 7.40 -92.71 -0.69 16.20 16 35 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.09 4.51 5.94 -2.39 -0.01 4.49 16 37 H 0.26 13.01 8.32 -92.71 -0.77 12.24 16 38 H 0.08 2.99 8.14 -2.39 -0.02 2.98 16 39 H 0.08 3.06 8.14 -2.39 -0.02 3.05 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.14 3.54 6.83 -2.91 -0.02 3.52 16 43 H 0.16 3.13 7.62 -2.91 -0.02 3.10 16 Total: -1.00 -59.24 374.94 2.69 -56.55 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.36 Total: 32.35 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.51 Total: 3.83 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.02 Total: -87.76 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: 0.54 Total: -47.45 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -59.24 2.69 -56.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411482531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.814 kcal (2) G-P(sol) polarization free energy of solvation -59.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds