Wall clock time and date at job start Wed Apr 1 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38311 * 119.92270 * 2 1 4 4 C 1.38085 * 120.07608 * 179.72581 * 3 2 1 5 5 C 1.38947 * 119.91594 * 0.54093 * 4 3 2 6 6 N 1.39731 * 120.07313 * 179.70495 * 5 4 3 7 7 C 1.34772 * 119.99922 * 35.58579 * 6 5 4 8 8 O 1.21380 * 119.99818 * 354.79866 * 7 6 5 9 9 C 1.49345 * 120.00138 * 174.79562 * 7 6 5 10 10 O 1.21363 * 120.00350 * 5.11176 * 9 7 6 11 11 N 1.34782 * 120.00238 * 185.11101 * 9 7 6 12 12 C 1.46498 * 120.00363 * 184.98457 * 11 9 7 13 13 C 1.52999 * 109.47318 * 184.81836 * 12 11 9 14 14 C 1.50696 * 115.54990 * 306.22982 * 13 12 11 15 15 H 1.08003 * 119.99971 * 144.10250 * 14 13 12 16 16 C 1.37877 * 120.00280 * 324.10774 * 14 13 12 17 17 N 1.31513 * 119.99852 * 3.30924 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 183.30908 * 16 14 13 19 19 H 1.48497 * 109.46899 * 89.99826 * 18 16 14 20 20 H 1.48496 * 109.47438 * 210.00105 * 18 16 14 21 21 H 1.48502 * 109.46983 * 329.99774 * 18 16 14 22 22 C 1.53002 * 117.49660 * 160.56078 * 13 12 11 23 23 C 1.52999 * 117.49659 * 91.90349 * 13 12 11 24 24 C 1.38910 * 119.85449 * 359.73454 * 5 4 3 25 25 C 1.38119 * 119.92060 * 359.97438 * 24 5 4 26 26 N 1.48016 * 119.96301 * 179.97438 * 25 24 5 27 27 O 1.21803 * 119.99780 * 1.97908 * 26 25 24 28 28 O 1.21794 * 120.00354 * 181.97692 * 26 25 24 29 29 H 1.09002 * 109.47252 * 261.81490 * 1 2 3 30 30 H 1.09001 * 109.47223 * 141.81178 * 1 2 3 31 31 H 1.09004 * 109.46466 * 21.81133 * 1 2 3 32 32 H 1.07998 * 119.96718 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.03759 * 180.24831 * 4 3 2 34 34 H 0.97003 * 119.99923 * 215.59014 * 6 5 4 35 35 H 0.96998 * 119.99869 * 4.98228 * 11 9 7 36 36 H 1.09003 * 109.47016 * 304.81812 * 12 11 9 37 37 H 1.09002 * 109.47017 * 64.81844 * 12 11 9 38 38 H 0.96998 * 120.00414 * 185.00673 * 17 16 14 39 39 H 1.08996 * 117.49936 * 359.97438 * 22 13 12 40 40 H 1.09000 * 117.49335 * 145.02111 * 22 13 12 41 41 H 1.09005 * 117.49485 * 214.98052 * 23 13 12 42 42 H 1.08996 * 117.50006 * 359.97296 * 23 13 12 43 43 H 1.07998 * 120.03931 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2024 0.0057 5 6 4.2740 0.0000 0.0001 6 7 5.6713 -0.0001 -0.0004 7 6 6.3455 0.9461 0.6829 8 8 5.7425 1.8522 1.2200 9 6 7.8343 0.8795 0.7791 10 8 8.4446 0.0281 0.1662 11 7 8.5003 1.7650 1.5465 12 6 9.9653 1.7700 1.5559 13 6 10.4652 2.7802 2.5906 14 6 9.9204 4.1782 2.4501 15 1 9.7118 4.7675 3.3308 16 6 9.6882 4.7049 1.1973 17 7 9.8802 3.9652 0.1270 18 14 9.1007 6.4692 1.0200 19 1 10.2740 7.3728 0.9101 20 1 8.2649 6.5924 -0.2012 21 1 8.2962 6.8450 2.2103 22 6 11.9047 2.6295 3.0868 23 6 10.7359 2.2663 4.0061 24 6 3.5779 -1.2021 -0.0057 25 6 2.1967 -1.1984 -0.0053 26 7 1.4541 -2.4787 -0.0120 27 8 2.0604 -3.5346 0.0186 28 8 0.2367 -2.4764 -0.0480 29 1 -0.3634 -0.1463 1.0172 30 1 -0.3634 -0.8077 -0.6354 31 1 -0.3632 0.9542 -0.3819 32 1 1.6552 2.1330 0.0004 33 1 4.1159 2.1388 0.0098 34 1 6.1562 -0.6810 -0.4925 35 1 8.0097 2.3990 2.0925 36 1 10.3304 0.7757 1.8130 37 1 10.3340 2.0485 0.5687 38 1 9.7873 4.3561 -0.7559 39 1 12.4953 1.8105 2.6764 40 1 12.4574 3.5415 3.3120 41 1 10.5201 2.9396 4.8357 42 1 10.5573 1.2087 4.2003 43 1 4.1161 -2.1384 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430393255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:58 Heat of formation + Delta-G solvation = -9.070825 kcal Electronic energy + Delta-G solvation = -29725.183202 eV Core-core repulsion = 25354.276893 eV Total energy + Delta-G solvation = -4370.906310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48059 -41.08448 -39.53077 -38.21126 -36.89843 -36.84581 -35.60848 -33.32415 -32.32406 -32.23946 -32.04505 -28.08337 -27.02623 -26.03512 -25.59646 -23.84100 -23.18873 -21.98734 -21.36219 -20.24754 -19.53197 -19.24400 -18.87943 -18.28013 -17.78317 -16.79535 -16.53453 -16.31438 -16.07737 -15.72883 -15.33361 -14.89849 -14.73941 -14.39132 -14.27728 -14.03820 -13.66669 -13.23978 -13.09795 -12.95222 -12.76613 -12.61451 -12.21576 -11.97932 -11.59749 -11.58444 -11.39004 -11.32230 -11.18780 -11.00258 -10.87980 -10.65612 -10.62986 -10.39671 -9.91792 -9.83026 -9.33096 -9.10364 -9.02857 -8.71499 -8.45843 -8.21377 -6.18155 -4.34627 -0.38419 0.47568 1.11653 1.14002 1.64982 2.37717 2.94106 3.15053 3.23744 3.25917 3.52754 3.81606 4.02478 4.16982 4.19870 4.44744 4.49336 4.64105 4.78145 5.00549 5.05964 5.06501 5.25035 5.33666 5.34702 5.58003 5.67973 5.70716 5.79306 5.85323 6.12364 6.13971 6.35503 6.35841 6.44596 6.54311 6.71092 6.80131 6.89516 7.09164 7.18550 7.39496 7.45973 7.59091 7.76368 8.12140 8.14946 8.59317 8.67263 9.29734 10.74173 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002488 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.344030 B =11251.536143 C =12334.108620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.031 4.031 3 C -0.103 4.103 4 C -0.064 4.064 5 C 0.150 3.850 6 N -0.652 5.652 7 C 0.514 3.486 8 O -0.496 6.496 9 C 0.497 3.503 10 O -0.543 6.543 11 N -0.635 5.635 12 C 0.161 3.839 13 C 0.031 3.969 14 C -0.496 4.496 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.194 4.194 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.032 4.032 26 N 0.036 4.964 27 O -0.166 6.166 28 O -0.160 6.160 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.428 0.572 35 H 0.413 0.587 36 H 0.033 0.967 37 H 0.121 0.879 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -6.574 -1.987 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.034 4.034 3 C -0.122 4.122 4 C -0.084 4.084 5 C 0.054 3.946 6 N -0.300 5.300 7 C 0.297 3.703 8 O -0.369 6.369 9 C 0.276 3.724 10 O -0.424 6.424 11 N -0.282 5.282 12 C 0.039 3.961 13 C 0.030 3.970 14 C -0.533 4.533 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.512 5.512 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.233 4.233 23 C -0.248 4.248 24 C -0.102 4.102 25 C -0.116 4.116 26 N 0.552 4.448 27 O -0.380 6.380 28 O -0.373 6.373 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.267 0.733 35 H 0.250 0.750 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.775 -5.866 -2.194 15.132 hybrid contribution -0.201 0.623 -0.063 0.658 sum -13.976 -5.243 -2.257 15.097 Atomic orbital electron populations 1.21363 0.88448 1.04758 1.04574 1.19914 0.98171 0.90378 0.94904 1.21084 0.93473 0.97296 1.00347 1.21912 0.94337 0.98968 0.93209 1.17414 0.83467 0.92646 1.01071 1.43198 1.03493 1.32654 1.50685 1.21025 0.90133 0.81410 0.77737 1.90751 1.69805 1.32243 1.44065 1.19330 0.86166 0.84160 0.82782 1.90720 1.68611 1.36658 1.46378 1.45613 1.09237 1.32434 1.40959 1.21351 0.76279 0.94891 1.03604 1.19211 0.93740 0.94997 0.89024 1.20563 1.43107 0.97037 0.92573 0.91813 1.24998 0.94310 0.97951 0.95780 1.69824 1.48581 1.34692 0.98076 0.86497 0.78826 0.84422 0.77841 1.20495 1.21127 1.19659 1.22954 0.92954 1.01220 1.06143 1.22981 1.06445 0.99143 0.96233 1.20658 0.91448 0.99402 0.98670 1.20529 0.91606 0.83299 1.16162 1.43521 1.01113 1.02705 0.97437 1.94556 1.70242 1.19518 1.53696 1.94439 0.95758 1.93793 1.53358 0.89685 0.87846 0.90779 0.83043 0.82111 0.73323 0.75005 0.94867 0.86198 0.92575 0.91292 0.89997 0.90410 0.91219 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.79 36.01 0.32 -0.68 16 2 C -0.03 -0.29 5.88 -104.58 -0.62 -0.91 16 3 C -0.10 -0.91 9.66 -39.61 -0.38 -1.29 16 4 C -0.06 -0.70 8.70 -39.37 -0.34 -1.05 16 5 C 0.15 1.71 6.29 -83.75 -0.53 1.18 16 6 N -0.65 -8.12 5.32 -10.30 -0.05 -8.17 16 7 C 0.51 8.16 7.73 -11.64 -0.09 8.07 16 8 O -0.50 -8.54 13.95 5.47 0.08 -8.47 16 9 C 0.50 9.31 7.88 -11.63 -0.09 9.22 16 10 O -0.54 -10.90 16.47 5.49 0.09 -10.81 16 11 N -0.64 -12.87 5.11 -60.76 -0.31 -13.18 16 12 C 0.16 3.50 4.63 -4.04 -0.02 3.48 16 13 C 0.03 0.69 2.07 -155.66 -0.32 0.36 16 14 C -0.50 -12.00 8.27 -34.44 -0.28 -12.28 16 15 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -21.86 10.19 55.43 0.57 -21.29 16 18 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.19 -3.96 9.96 -26.69 -0.27 -4.23 16 23 C -0.21 -4.14 9.92 -26.69 -0.26 -4.40 16 24 C -0.08 -0.84 9.48 -39.38 -0.37 -1.22 16 25 C -0.03 -0.35 6.84 -79.98 -0.55 -0.90 16 26 N 0.04 0.44 4.45 33.95 0.15 0.59 16 27 O -0.17 -2.20 18.45 -29.46 -0.54 -2.74 16 28 O -0.16 -1.93 15.27 -29.46 -0.45 -2.38 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.84 5.65 -51.93 -0.29 0.55 16 31 H 0.07 0.39 8.02 -51.93 -0.42 -0.02 16 32 H 0.15 0.93 8.05 -52.49 -0.42 0.50 16 33 H 0.16 1.95 6.24 -52.49 -0.33 1.62 16 34 H 0.43 4.64 8.30 -40.82 -0.34 4.30 16 35 H 0.41 8.51 7.41 -40.82 -0.30 8.20 16 36 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 37 H 0.12 2.95 5.96 -51.93 -0.31 2.64 16 38 H 0.26 6.46 8.32 -40.82 -0.34 6.12 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.16 1.46 7.61 -52.49 -0.40 1.06 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -27.06 373.59 -8.66 -35.71 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.89 Total: 13.60 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.90 Total: -2.94 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.35 Total: -42.06 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.83 Total: -24.41 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.06 -8.66 -35.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430393255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.642 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds