Wall clock time and date at job start Wed Apr 1 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38311 * 119.92270 * 2 1 4 4 C 1.38085 * 120.07608 * 179.72581 * 3 2 1 5 5 C 1.38947 * 119.91594 * 0.54093 * 4 3 2 6 6 N 1.39731 * 120.07313 * 179.70495 * 5 4 3 7 7 C 1.34772 * 119.99922 * 35.58579 * 6 5 4 8 8 O 1.21380 * 119.99818 * 354.79866 * 7 6 5 9 9 C 1.49345 * 120.00138 * 174.79562 * 7 6 5 10 10 O 1.21363 * 120.00350 * 5.11176 * 9 7 6 11 11 N 1.34782 * 120.00238 * 185.11101 * 9 7 6 12 12 C 1.46498 * 120.00363 * 184.98457 * 11 9 7 13 13 C 1.52999 * 109.47318 * 184.81836 * 12 11 9 14 14 C 1.50696 * 115.54990 * 306.22982 * 13 12 11 15 15 H 1.08003 * 119.99971 * 144.10250 * 14 13 12 16 16 C 1.37877 * 120.00280 * 324.10774 * 14 13 12 17 17 N 1.31513 * 119.99852 * 3.30924 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 183.30908 * 16 14 13 19 19 H 1.48497 * 109.46899 * 89.99826 * 18 16 14 20 20 H 1.48496 * 109.47438 * 210.00105 * 18 16 14 21 21 H 1.48502 * 109.46983 * 329.99774 * 18 16 14 22 22 C 1.53002 * 117.49660 * 160.56078 * 13 12 11 23 23 C 1.52999 * 117.49659 * 91.90349 * 13 12 11 24 24 C 1.38910 * 119.85449 * 359.73454 * 5 4 3 25 25 C 1.38119 * 119.92060 * 359.97438 * 24 5 4 26 26 N 1.48016 * 119.96301 * 179.97438 * 25 24 5 27 27 O 1.21803 * 119.99780 * 1.97908 * 26 25 24 28 28 O 1.21794 * 120.00354 * 181.97692 * 26 25 24 29 29 H 1.09002 * 109.47252 * 261.81490 * 1 2 3 30 30 H 1.09001 * 109.47223 * 141.81178 * 1 2 3 31 31 H 1.09004 * 109.46466 * 21.81133 * 1 2 3 32 32 H 1.07998 * 119.96718 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.03759 * 180.24831 * 4 3 2 34 34 H 0.97003 * 119.99923 * 215.59014 * 6 5 4 35 35 H 0.96998 * 119.99869 * 4.98228 * 11 9 7 36 36 H 1.09003 * 109.47016 * 304.81812 * 12 11 9 37 37 H 1.09002 * 109.47017 * 64.81844 * 12 11 9 38 38 H 0.96998 * 120.00414 * 185.00673 * 17 16 14 39 39 H 1.08996 * 117.49936 * 359.97438 * 22 13 12 40 40 H 1.09000 * 117.49335 * 145.02111 * 22 13 12 41 41 H 1.09005 * 117.49485 * 214.98052 * 23 13 12 42 42 H 1.08996 * 117.50006 * 359.97296 * 23 13 12 43 43 H 1.07998 * 120.03931 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2024 0.0057 5 6 4.2740 0.0000 0.0001 6 7 5.6713 -0.0001 -0.0004 7 6 6.3455 0.9461 0.6829 8 8 5.7425 1.8522 1.2200 9 6 7.8343 0.8795 0.7791 10 8 8.4446 0.0281 0.1662 11 7 8.5003 1.7650 1.5465 12 6 9.9653 1.7700 1.5559 13 6 10.4652 2.7802 2.5906 14 6 9.9204 4.1782 2.4501 15 1 9.7118 4.7675 3.3308 16 6 9.6882 4.7049 1.1973 17 7 9.8802 3.9652 0.1270 18 14 9.1007 6.4692 1.0200 19 1 10.2740 7.3728 0.9101 20 1 8.2649 6.5924 -0.2012 21 1 8.2962 6.8450 2.2103 22 6 11.9047 2.6295 3.0868 23 6 10.7359 2.2663 4.0061 24 6 3.5779 -1.2021 -0.0057 25 6 2.1967 -1.1984 -0.0053 26 7 1.4541 -2.4787 -0.0120 27 8 2.0604 -3.5346 0.0186 28 8 0.2367 -2.4764 -0.0480 29 1 -0.3634 -0.1463 1.0172 30 1 -0.3634 -0.8077 -0.6354 31 1 -0.3632 0.9542 -0.3819 32 1 1.6552 2.1330 0.0004 33 1 4.1159 2.1388 0.0098 34 1 6.1562 -0.6810 -0.4925 35 1 8.0097 2.3990 2.0925 36 1 10.3304 0.7757 1.8130 37 1 10.3340 2.0485 0.5687 38 1 9.7873 4.3561 -0.7559 39 1 12.4953 1.8105 2.6764 40 1 12.4574 3.5415 3.3120 41 1 10.5201 2.9396 4.8357 42 1 10.5573 1.2087 4.2003 43 1 4.1161 -2.1384 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430393255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:57 Heat of formation + Delta-G solvation = -23.732677 kcal Electronic energy + Delta-G solvation = -29725.818988 eV Core-core repulsion = 25354.276893 eV Total energy + Delta-G solvation = -4371.542095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.39876 -42.23949 -40.67970 -39.53856 -38.48364 -37.84232 -36.67932 -34.87488 -34.14773 -33.07022 -32.92076 -29.06631 -28.39983 -27.56079 -26.87543 -25.04913 -24.03903 -23.04094 -22.86370 -21.52379 -21.22527 -20.23346 -19.95262 -19.58507 -18.70820 -18.19954 -17.87753 -17.48514 -17.13910 -16.76547 -16.75149 -16.52986 -16.09526 -15.67595 -15.30675 -15.00784 -14.96537 -14.76159 -14.39866 -13.79611 -13.78545 -13.69223 -13.44518 -13.34666 -12.98879 -12.95637 -12.70712 -12.62864 -12.52439 -12.31721 -12.30002 -12.05852 -11.88710 -11.58489 -11.51467 -10.97729 -10.80684 -10.71094 -10.60985 -10.19997 -9.88508 -9.60640 -8.01615 -6.22945 -1.28193 -0.40415 0.19947 0.23937 0.40563 1.18610 1.41625 1.46494 1.52971 1.99744 2.22957 2.40061 2.54889 3.01774 3.27179 3.42377 3.43171 3.59455 3.64594 3.72024 3.84885 4.21890 4.24847 4.34954 4.49602 4.66361 4.69234 4.69812 4.72729 4.75202 4.91825 4.96288 5.00673 5.04254 5.06875 5.22591 5.26141 5.44624 5.53325 5.56032 5.57994 5.76507 5.91450 6.33420 6.35199 6.49944 6.61404 6.81719 7.04321 7.42248 8.87563 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002488 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.344030 B =11251.536143 C =12334.108620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.091 4.091 4 C -0.070 4.070 5 C 0.133 3.867 6 N -0.636 5.636 7 C 0.522 3.478 8 O -0.512 6.512 9 C 0.496 3.504 10 O -0.559 6.559 11 N -0.642 5.642 12 C 0.172 3.828 13 C 0.003 3.997 14 C -0.505 4.505 15 H 0.056 0.944 16 C 0.038 3.962 17 N -0.892 5.892 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.269 1.269 22 C -0.192 4.192 23 C -0.190 4.190 24 C -0.074 4.074 25 C -0.046 4.046 26 N 0.036 4.964 27 O -0.202 6.202 28 O -0.146 6.146 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.185 0.815 33 H 0.151 0.849 34 H 0.435 0.565 35 H 0.411 0.589 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.954 -6.144 -1.652 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 C -0.110 4.110 4 C -0.090 4.090 5 C 0.038 3.962 6 N -0.284 5.284 7 C 0.304 3.696 8 O -0.386 6.386 9 C 0.275 3.725 10 O -0.440 6.440 11 N -0.288 5.288 12 C 0.049 3.951 13 C 0.002 3.998 14 C -0.542 4.542 15 H 0.075 0.925 16 C -0.163 4.163 17 N -0.529 5.529 18 Si 0.773 3.227 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.231 4.231 23 C -0.227 4.227 24 C -0.095 4.095 25 C -0.130 4.130 26 N 0.550 4.450 27 O -0.408 6.408 28 O -0.365 6.365 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.202 0.798 33 H 0.168 0.832 34 H 0.275 0.725 35 H 0.247 0.753 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.520 -5.512 -1.864 16.575 hybrid contribution 0.244 0.495 -0.175 0.579 sum -15.276 -5.017 -2.039 16.207 Atomic orbital electron populations 1.21447 0.86705 1.06125 1.04911 1.20261 0.99406 0.89755 0.92994 1.21390 0.92506 0.98378 0.98716 1.21967 0.95429 0.98265 0.93329 1.17450 0.82567 0.93285 1.02933 1.42967 1.04189 1.31666 1.49580 1.20348 0.88719 0.82103 0.78406 1.90748 1.69576 1.33071 1.45193 1.19775 0.87608 0.83297 0.81782 1.90701 1.69549 1.37117 1.46678 1.45556 1.08741 1.32916 1.41627 1.21035 0.77252 0.94825 1.01938 1.19270 0.95157 0.94467 0.90913 1.20728 1.43096 0.98062 0.92313 0.92531 1.25513 0.94672 1.00446 0.95698 1.69972 1.49509 1.35428 0.98016 0.85730 0.78185 0.81338 0.77472 1.20621 1.21474 1.19400 1.22971 0.92490 1.01571 1.06035 1.22978 1.04738 1.00090 0.94878 1.20662 0.91529 0.99412 0.97914 1.20696 0.91794 0.83156 1.17399 1.43696 1.01150 1.03015 0.97146 1.94563 1.70330 1.20235 1.55656 1.94421 0.95947 1.93923 1.52216 0.89007 0.88541 0.88000 0.79755 0.83173 0.72510 0.75285 0.94455 0.89162 0.93078 0.90048 0.90366 0.89978 0.89560 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.79 71.24 0.63 -0.93 16 2 C -0.02 -0.35 5.88 -19.84 -0.12 -0.47 16 3 C -0.09 -1.33 9.66 22.25 0.21 -1.12 16 4 C -0.07 -1.42 8.70 22.40 0.19 -1.22 16 5 C 0.13 2.88 6.29 38.21 0.24 3.12 16 6 N -0.64 -15.50 5.32 -304.84 -1.62 -17.12 16 7 C 0.52 16.47 7.73 87.24 0.67 17.15 16 8 O -0.51 -17.46 13.95 -3.34 -0.05 -17.51 16 9 C 0.50 18.68 7.88 87.24 0.69 19.37 16 10 O -0.56 -22.60 16.47 -3.29 -0.05 -22.65 16 11 N -0.64 -26.23 5.11 -464.51 -2.38 -28.60 16 12 C 0.17 7.57 4.63 86.38 0.40 7.97 16 13 C 0.00 0.11 2.07 -52.93 -0.11 0.00 16 14 C -0.50 -24.43 8.27 25.60 0.21 -24.22 16 15 H 0.06 2.76 7.82 -2.91 -0.02 2.73 16 16 C 0.04 1.87 5.30 84.65 0.45 2.32 16 17 N -0.89 -45.16 10.19 21.45 0.22 -44.94 16 18 Si 0.95 39.99 29.54 68.60 2.03 42.01 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.19 -7.66 9.96 30.62 0.30 -7.36 16 23 C -0.19 -7.17 9.92 30.62 0.30 -6.86 16 24 C -0.07 -1.48 9.48 22.40 0.21 -1.27 16 25 C -0.05 -0.94 6.84 36.35 0.25 -0.69 16 26 N 0.04 0.85 4.45 -46.51 -0.21 0.64 16 27 O -0.20 -5.34 18.45 18.88 0.35 -4.99 16 28 O -0.15 -3.30 15.27 18.89 0.29 -3.01 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.30 5.65 -2.39 -0.01 1.29 16 31 H 0.10 0.63 8.02 -2.38 -0.02 0.61 16 32 H 0.19 1.46 8.05 -2.91 -0.02 1.44 16 33 H 0.15 3.47 6.24 -2.91 -0.02 3.45 16 34 H 0.43 9.26 8.30 -92.71 -0.77 8.49 16 35 H 0.41 17.09 7.41 -92.71 -0.69 16.41 16 36 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16 37 H 0.09 4.54 5.96 -2.39 -0.01 4.53 16 38 H 0.26 12.91 8.32 -92.71 -0.77 12.13 16 39 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.17 2.97 7.61 -2.91 -0.02 2.95 16 Total: -1.00 -57.65 373.59 2.76 -54.89 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.36 Total: 35.48 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.54 Total: 5.80 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -3.99 Total: -90.02 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: 0.54 Total: -48.16 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -57.65 2.76 -54.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430393255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.156 kcal (2) G-P(sol) polarization free energy of solvation -57.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds