Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48498 * 109.47406 * 269.99736 * 3 2 1 5 5 H 1.48493 * 109.46968 * 30.00371 * 3 2 1 6 6 H 1.48508 * 109.46784 * 149.99809 * 3 2 1 7 7 C 1.38811 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00388 * 163.06575 * 7 2 1 9 9 N 1.36943 * 120.00043 * 343.06690 * 7 2 1 10 10 C 1.46929 * 120.63022 * 331.83797 * 9 7 2 11 11 C 1.53188 * 108.77753 * 233.63000 * 10 9 7 12 12 C 1.53042 * 109.31361 * 305.36694 * 11 10 9 13 13 C 1.52997 * 109.45825 * 181.38560 * 12 11 10 14 14 N 1.46503 * 109.46729 * 174.97189 * 13 12 11 15 15 C 1.34776 * 119.99735 * 179.97438 * 14 13 12 16 16 O 1.21611 * 120.00233 * 0.02562 * 15 14 13 17 17 C 1.47418 * 120.00184 * 179.97438 * 15 14 13 18 18 N 1.36067 * 126.44610 * 0.12138 * 17 15 14 19 19 C 1.29934 * 108.47958 * 180.28929 * 18 17 15 20 20 O 1.34053 * 109.23957 * 359.75658 * 19 18 17 21 21 C 1.34250 * 108.22727 * 0.02562 * 20 19 18 22 22 C 1.50704 * 126.52705 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47022 * 270.02408 * 22 21 20 24 24 F 1.39900 * 109.47008 * 30.02067 * 22 21 20 25 25 F 1.39897 * 109.47441 * 150.02320 * 22 21 20 26 26 C 1.53038 * 109.52647 * 61.37197 * 12 11 10 27 27 C 1.46919 * 120.63196 * 151.85905 * 9 7 2 28 28 H 0.97008 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58471 * 113.83710 * 10 9 7 30 30 H 1.09004 * 109.70447 * 353.48996 * 10 9 7 31 31 H 1.09001 * 109.49821 * 185.40924 * 11 10 9 32 32 H 1.09002 * 109.52002 * 65.33395 * 11 10 9 33 33 H 1.09000 * 109.45884 * 301.35739 * 12 11 10 34 34 H 1.08995 * 109.47440 * 54.97185 * 13 12 11 35 35 H 1.09003 * 109.46934 * 294.97054 * 13 12 11 36 36 H 0.96994 * 119.99984 * 0.02562 * 14 13 12 37 37 H 1.07998 * 125.38743 * 179.73757 * 19 18 17 38 38 H 1.09001 * 109.50003 * 58.57997 * 26 12 11 39 39 H 1.08999 * 109.49605 * 178.68356 * 26 12 11 40 40 H 1.08994 * 109.59384 * 246.15434 * 27 9 7 41 41 H 1.09001 * 109.59059 * 6.44733 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3699 -2.3626 0.3444 10 6 0.2261 -2.3409 1.2663 11 6 0.4981 -3.3201 2.4126 12 6 0.8131 -4.7016 1.8341 13 6 1.0513 -5.6904 2.9770 14 7 1.2341 -7.0363 2.4280 15 6 1.4600 -8.0764 3.2548 16 8 1.5116 -7.8977 4.4566 17 6 1.6433 -9.4309 2.7025 18 7 1.6128 -9.7785 1.3874 19 6 1.8084 -11.0598 1.2954 20 8 1.9737 -11.5707 2.5237 21 6 1.8765 -10.5686 3.4119 22 6 1.9971 -10.6828 4.9097 23 9 0.7346 -10.9237 5.4622 24 9 2.8554 -11.7404 5.2292 25 9 2.5133 -9.4904 5.4283 26 6 2.0684 -4.6172 0.9628 27 6 1.8140 -3.6528 -0.2001 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6416 0.7352 30 1 0.0964 -1.3357 1.6675 31 1 -0.3823 -3.3854 3.0519 32 1 1.3476 -2.9686 2.9981 33 1 -0.0270 -5.0419 1.2287 34 1 0.1919 -5.6850 3.6473 35 1 1.9447 -5.3989 3.5293 36 1 1.1932 -7.1788 1.4694 37 1 1.8335 -11.6241 0.3750 38 1 2.9032 -4.2531 1.5617 39 1 2.3057 -5.6059 0.5700 40 1 1.0405 -4.0607 -0.8507 41 1 2.7333 -3.5126 -0.7688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597292655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = -158.558506 kcal Electronic energy + Delta-G solvation = -30707.652131 eV Core-core repulsion = 25788.406808 eV Total energy + Delta-G solvation = -4919.245322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.38852 -48.93839 -48.84194 -44.86105 -40.90791 -39.35528 -36.52429 -36.29002 -34.50212 -32.86911 -32.51335 -31.40737 -28.93064 -27.54499 -26.03161 -24.92437 -23.87513 -23.51052 -22.58319 -21.86442 -20.80378 -20.24880 -19.86638 -19.52515 -19.02800 -18.58563 -18.03873 -17.27753 -16.99384 -16.73791 -16.43324 -15.82219 -15.77531 -15.69227 -15.40191 -15.32077 -15.29561 -15.21098 -15.02100 -14.94857 -14.77357 -14.72973 -14.06612 -13.90968 -13.81208 -13.47360 -12.99852 -12.86041 -12.72817 -12.55058 -12.27669 -12.22360 -12.01773 -11.83722 -11.65446 -11.50071 -11.14913 -11.09865 -10.81541 -10.52368 -10.19488 -8.65459 -7.86494 -5.31148 -0.68151 0.46579 0.80144 1.46377 1.48462 1.57784 1.68054 1.83527 1.91265 2.44772 2.52168 2.77189 2.98519 3.01699 3.28215 3.36338 3.71820 3.78334 3.84601 3.93496 4.07909 4.12868 4.50732 4.54905 4.67907 4.72390 4.78388 4.85395 4.94578 5.01806 5.12763 5.23120 5.29187 5.31346 5.43210 5.56198 5.67153 5.80287 5.95098 6.33679 6.41192 6.90135 7.17092 7.89426 8.40003 9.19725 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.002130 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.502386 B =13144.406642 C =13600.486023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.121 4.121 12 C -0.079 4.079 13 C 0.134 3.866 14 N -0.690 5.690 15 C 0.579 3.421 16 O -0.543 6.543 17 C 0.012 3.988 18 N -0.490 5.490 19 C 0.257 3.743 20 O -0.168 6.168 21 C -0.096 4.096 22 C 0.564 3.436 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.139 7.139 26 C -0.115 4.115 27 C 0.141 3.859 28 H 0.249 0.751 29 H -0.002 1.002 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.418 0.582 37 H 0.328 0.672 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.017 0.983 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -28.040 4.609 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.161 4.161 12 C -0.098 4.098 13 C 0.011 3.989 14 N -0.341 5.341 15 C 0.363 3.637 16 O -0.421 6.421 17 C -0.110 4.110 18 N -0.218 5.218 19 C 0.030 3.970 20 O -0.054 6.054 21 C -0.154 4.154 22 C 0.509 3.491 23 F -0.145 7.145 24 F -0.145 7.145 25 F -0.120 7.120 26 C -0.154 4.154 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.256 0.744 37 H 0.342 0.658 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.092 -27.353 4.974 27.973 hybrid contribution 0.234 0.741 0.054 0.778 sum 3.325 -26.613 5.029 27.287 Atomic orbital electron populations 1.70176 1.06603 1.25788 1.55522 1.25768 0.96034 1.01410 1.01425 0.85328 0.78091 0.79774 0.77568 1.21113 1.21900 1.19694 1.19493 0.92773 0.86188 1.40772 0.91813 1.44335 1.36009 1.02391 1.50850 1.20570 0.87775 0.97551 0.88974 1.21974 1.01095 0.94752 0.98268 1.21155 0.98780 0.94124 0.95700 1.21463 1.01972 0.79438 0.96006 1.45766 1.70029 1.07043 1.11238 1.17000 0.77793 0.82949 0.85964 1.90939 1.51766 1.84675 1.14681 1.21631 1.04446 0.94706 0.90245 1.70989 1.19934 1.15011 1.15874 1.29916 0.90900 0.88576 0.87589 1.84430 1.67758 1.35827 1.17424 1.22912 1.12658 0.88279 0.91585 1.16515 0.74876 0.74937 0.82813 1.93274 1.40615 1.94118 1.86484 1.93264 1.70402 1.57142 1.93705 1.93427 1.86530 1.45036 1.86966 1.21931 0.96929 0.99226 0.97292 1.21056 0.97244 0.85977 0.94198 0.94140 0.98373 0.93009 0.91019 0.92905 0.90493 0.90848 0.91523 0.74446 0.65770 0.92917 0.90126 0.96465 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 11.19 21.65 0.24 -55.04 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.96 44.97 29.59 68.60 2.03 47.00 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -30.30 2.99 -699.08 -2.09 -32.40 16 10 C 0.18 8.36 5.30 86.36 0.46 8.82 16 11 C -0.12 -4.31 5.36 30.67 0.16 -4.15 16 12 C -0.08 -2.28 2.19 -10.77 -0.02 -2.31 16 13 C 0.13 3.43 5.06 86.38 0.44 3.87 16 14 N -0.69 -15.93 5.27 -466.38 -2.46 -18.39 16 15 C 0.58 14.79 7.76 86.66 0.67 15.46 16 16 O -0.54 -16.85 13.16 -4.07 -0.05 -16.90 16 17 C 0.01 0.24 6.96 40.41 0.28 0.52 16 18 N -0.49 -7.40 11.06 -305.15 -3.37 -10.77 16 19 C 0.26 1.67 13.19 130.52 1.72 3.39 16 20 O -0.17 -2.07 10.72 0.42 0.00 -2.06 16 21 C -0.10 -1.82 6.75 25.19 0.17 -1.65 16 22 C 0.56 11.89 3.34 71.24 0.24 12.13 16 23 F -0.16 -3.56 17.30 44.97 0.78 -2.79 16 24 F -0.16 -3.10 17.30 44.97 0.78 -2.32 16 25 F -0.14 -3.59 13.51 44.97 0.61 -2.98 16 26 C -0.11 -3.51 5.25 30.68 0.16 -3.35 16 27 C 0.14 5.56 6.52 86.37 0.56 6.12 16 28 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 29 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.05 2.81 6.06 -2.38 -0.01 2.79 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.42 8.41 7.38 -92.71 -0.68 7.72 16 37 H 0.33 -2.44 8.06 -2.91 -0.02 -2.46 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 Total: -1.00 -72.40 353.49 2.94 -69.46 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.41 Total: 4.38 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.07 Total: 22.82 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -7.68 Total: -116.60 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 2.16 Total: -8.09 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.40 2.94 -69.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597292655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.097 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds