Wall clock time and date at job start Wed Apr 1 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47389 * 56.58093 * 3 2 1 5 5 C 1.50698 * 109.47106 * 176.58219 * 3 2 1 6 6 H 1.07998 * 120.00607 * 114.61282 * 5 3 2 7 7 C 1.37880 * 119.99920 * 294.61748 * 5 3 2 8 8 N 1.31515 * 120.00117 * 160.50548 * 7 5 3 9 9 Si 1.86800 * 119.99977 * 340.50755 * 7 5 3 10 10 H 1.48501 * 109.46924 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47241 * 299.99978 * 9 7 5 12 12 H 1.48507 * 109.47286 * 59.99863 * 9 7 5 13 13 N 1.46497 * 109.46837 * 296.57788 * 3 2 1 14 14 C 1.34785 * 119.99929 * 85.00327 * 13 3 2 15 15 O 1.21355 * 119.99968 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99892 * 179.97438 * 14 13 3 17 17 O 1.21385 * 120.00114 * 0.02562 * 16 14 13 18 18 N 1.34769 * 119.99648 * 179.97438 * 16 14 13 19 19 C 1.39858 * 120.00064 * 184.41904 * 18 16 14 20 20 C 1.38942 * 119.98592 * 141.49988 * 19 18 16 21 21 C 1.38210 * 120.18026 * 179.97438 * 20 19 18 22 22 C 1.38427 * 119.98019 * 0.02562 * 21 20 19 23 23 C 1.39449 * 119.98789 * 0.02562 * 22 21 20 24 24 C 1.38426 * 120.05253 * 359.67936 * 23 22 21 25 25 N 1.40213 * 119.27552 * 179.91238 * 23 22 21 26 26 C 1.35083 * 119.00087 * 15.49458 * 25 23 22 27 27 O 1.21294 * 120.13244 * 181.65569 * 26 25 23 28 28 C 1.50748 * 119.72951 * 1.67084 * 26 25 23 29 29 O 1.36062 * 120.59092 * 180.02562 * 22 21 20 30 30 H 1.08998 * 109.47471 * 59.99955 * 1 2 3 31 31 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47303 * 300.00431 * 1 2 3 33 33 H 1.09003 * 109.46779 * 239.99549 * 2 1 3 34 34 H 1.09002 * 109.46611 * 119.99831 * 2 1 3 35 35 H 0.97003 * 119.99695 * 354.92257 * 8 7 5 36 36 H 0.97000 * 120.00782 * 265.00010 * 13 3 2 37 37 H 0.97002 * 120.00483 * 4.42486 * 18 16 14 38 38 H 1.08004 * 119.90622 * 359.96034 * 20 19 18 39 39 H 1.08001 * 120.00673 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.11604 * 180.30810 * 24 23 22 41 41 H 0.96999 * 120.50058 * 195.48099 * 25 23 22 42 42 H 1.09001 * 109.44578 * 208.60276 * 28 26 25 43 43 H 1.09005 * 109.41826 * 88.69433 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6276 1.9737 0.8577 5 6 3.5446 1.4433 0.0847 6 1 4.1319 1.8161 -0.7414 7 6 4.1716 0.9679 1.2170 8 7 5.4353 0.6070 1.1665 9 14 3.2262 0.8365 2.8227 10 1 4.1198 0.3006 3.8808 11 1 2.7376 2.1811 3.2209 12 1 2.0694 -0.0772 2.6428 13 7 1.6202 2.1088 -1.2353 14 6 0.4003 2.6767 -1.3135 15 8 -0.3500 2.6364 -0.3606 16 6 -0.0275 3.3564 -2.5725 17 8 0.7232 3.3971 -3.5255 18 7 -1.2474 3.9237 -2.6509 19 6 -1.6842 4.4789 -3.8580 20 6 -3.0101 4.3364 -4.2483 21 6 -3.4462 4.8838 -5.4401 22 6 -2.5607 5.5758 -6.2484 23 6 -1.2291 5.7198 -5.8602 24 6 -0.7933 5.1769 -4.6637 25 7 -0.3447 6.4221 -6.6912 26 6 -0.8480 7.2033 -7.6716 27 8 -0.1013 7.7962 -8.4213 28 6 -2.3413 7.3354 -7.8298 29 8 -2.9768 6.1202 -7.4239 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9056 0.6052 0.3181 36 1 2.2200 2.1414 -1.9969 37 1 -1.8226 3.9472 -1.8701 38 1 -3.7017 3.7961 -3.6188 39 1 -4.4772 4.7710 -5.7410 40 1 0.2365 5.2921 -4.3596 41 1 0.6140 6.3482 -6.5639 42 1 -2.5791 7.5378 -8.8741 43 1 -2.7000 8.1574 -7.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615215580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:30 Heat of formation + Delta-G solvation = -130.244670 kcal Electronic energy + Delta-G solvation = -29770.491091 eV Core-core repulsion = 25394.330289 eV Total energy + Delta-G solvation = -4376.160802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62957 -41.96434 -40.42185 -39.70019 -38.50927 -37.32731 -36.63031 -35.34130 -34.47399 -33.15556 -31.28041 -30.76289 -29.40089 -28.69575 -26.28872 -24.50982 -24.37417 -23.94342 -22.16430 -21.34699 -20.93645 -20.43977 -19.97344 -19.38356 -18.68669 -18.40159 -17.89925 -17.44070 -17.06543 -16.95952 -16.75970 -16.22382 -15.80997 -15.72180 -15.51707 -15.36145 -15.08014 -14.82610 -14.55149 -14.52557 -14.39458 -14.24388 -13.98617 -13.76735 -13.58487 -12.92425 -12.66703 -12.64077 -12.53175 -12.41690 -12.26997 -12.17172 -11.78925 -11.44762 -11.40678 -11.14085 -10.94518 -10.70011 -10.53195 -10.01541 -9.63211 -8.88906 -8.82945 -6.47176 -0.23919 0.03039 0.43221 1.12224 1.26792 1.48337 1.52556 1.62442 1.72156 2.08299 2.21048 2.44569 2.59142 2.65672 2.89436 2.96285 3.38830 3.56441 3.98285 4.03118 4.06253 4.11455 4.29567 4.32010 4.38090 4.49807 4.58693 4.66151 4.78709 4.87404 5.08789 5.10338 5.14488 5.18270 5.24011 5.33633 5.40345 5.50886 5.52148 5.61028 5.66789 5.91396 5.98352 6.16964 6.43266 6.49434 6.58010 6.69601 6.97788 7.28624 8.55348 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.002248 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.725601 B =12450.228544 C =13397.013551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.039 0.961 5 C -0.624 4.624 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.923 5.923 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.239 1.239 13 N -0.671 5.671 14 C 0.499 3.501 15 O -0.536 6.536 16 C 0.515 3.485 17 O -0.524 6.524 18 N -0.629 5.629 19 C 0.135 3.865 20 C -0.109 4.109 21 C -0.078 4.078 22 C 0.061 3.939 23 C 0.098 3.902 24 C -0.133 4.133 25 N -0.660 5.660 26 C 0.487 3.513 27 O -0.552 6.552 28 C 0.054 3.946 29 O -0.303 6.303 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.258 0.742 36 H 0.407 0.593 37 H 0.436 0.564 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.128 0.872 41 H 0.416 0.584 42 H 0.169 0.831 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.218 10.134 -12.884 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.661 4.661 6 H 0.053 0.947 7 C -0.202 4.202 8 N -0.557 5.557 9 Si 0.889 3.111 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.163 1.163 13 N -0.320 5.320 14 C 0.279 3.721 15 O -0.415 6.415 16 C 0.298 3.702 17 O -0.399 6.399 18 N -0.278 5.278 19 C 0.041 3.959 20 C -0.129 4.129 21 C -0.097 4.097 22 C 0.014 3.986 23 C 0.002 3.998 24 C -0.156 4.156 25 N -0.306 5.306 26 C 0.275 3.725 27 O -0.429 6.429 28 C -0.023 4.023 29 O -0.217 6.217 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.242 0.758 37 H 0.277 0.723 38 H 0.191 0.809 39 H 0.196 0.804 40 H 0.146 0.854 41 H 0.256 0.744 42 H 0.186 0.814 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.896 10.011 -11.859 28.494 hybrid contribution 1.920 0.526 -1.642 2.581 sum -21.976 10.537 -13.501 27.861 Atomic orbital electron populations 1.21794 0.94871 1.00943 1.01628 1.22257 0.95969 0.97735 1.01698 1.18982 0.93377 0.89897 0.82959 0.94294 1.22218 0.91344 1.47563 1.04991 0.94657 1.26922 0.96454 0.91432 1.05393 1.70964 1.12269 1.43184 1.29262 0.83790 0.75783 0.78935 0.72590 1.21113 1.19391 1.16278 1.46049 1.14908 1.53053 1.17981 1.19935 0.83303 0.80741 0.88079 1.90727 1.52790 1.59738 1.38205 1.20309 0.82743 0.79181 0.88012 1.90766 1.52664 1.58024 1.38486 1.42975 1.16761 1.54846 1.13208 1.17591 0.94177 0.96690 0.87420 1.21153 0.93701 1.00888 0.97180 1.20661 1.00425 0.97458 0.91158 1.18852 0.90126 1.01237 0.88416 1.17859 0.89723 0.99550 0.92671 1.20583 1.01208 0.99979 0.93821 1.43860 1.10502 1.44660 1.31621 1.22240 0.93987 0.77417 0.78813 1.90807 1.62147 1.46369 1.43606 1.23439 0.84490 0.87537 1.06827 1.86268 1.61291 1.39001 1.35171 0.93587 0.92218 0.92880 0.93076 0.91810 0.93250 0.75830 0.72318 0.80920 0.80443 0.85384 0.74444 0.81351 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.49 71.98 0.61 -3.98 16 2 C -0.14 -5.60 5.32 30.59 0.16 -5.43 16 3 C 0.25 11.23 1.85 44.24 0.08 11.31 16 4 H 0.04 1.82 6.21 -2.39 -0.01 1.81 16 5 C -0.62 -33.20 8.99 25.60 0.23 -32.97 16 6 H 0.04 2.04 7.96 -2.91 -0.02 2.02 16 7 C 0.00 -0.03 5.29 84.66 0.45 0.41 16 8 N -0.92 -54.96 13.70 21.45 0.29 -54.67 16 9 Si 1.07 47.39 26.37 68.60 1.81 49.20 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.24 -9.36 5.79 99.48 0.58 -8.79 16 13 N -0.67 -26.10 5.00 -447.56 -2.24 -28.34 16 14 C 0.50 16.87 6.38 87.23 0.56 17.43 16 15 O -0.54 -18.76 13.61 -3.26 -0.04 -18.81 16 16 C 0.52 14.66 7.71 87.23 0.67 15.34 16 17 O -0.52 -17.04 14.16 -3.36 -0.05 -17.09 16 18 N -0.63 -12.84 5.31 -304.74 -1.62 -14.46 16 19 C 0.14 2.48 6.23 38.20 0.24 2.72 16 20 C -0.11 -1.25 9.96 22.43 0.22 -1.02 16 21 C -0.08 -0.83 9.99 22.31 0.22 -0.60 16 22 C 0.06 0.93 6.44 22.61 0.15 1.07 16 23 C 0.10 1.86 6.54 38.14 0.25 2.11 16 24 C -0.13 -2.83 8.57 22.48 0.19 -2.64 16 25 N -0.66 -12.85 5.47 -302.73 -1.66 -14.51 16 26 C 0.49 9.33 7.94 87.62 0.70 10.02 16 27 O -0.55 -14.45 17.95 -3.07 -0.06 -14.50 16 28 C 0.05 0.59 7.17 71.25 0.51 1.10 16 29 O -0.30 -4.18 10.45 -94.26 -0.99 -5.17 16 30 H 0.05 1.53 5.68 -2.39 -0.01 1.51 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.83 7.75 -2.39 -0.02 1.81 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.68 5.00 -2.39 -0.01 2.66 16 35 H 0.26 15.55 8.73 -92.71 -0.81 14.74 16 36 H 0.41 15.71 8.00 -92.71 -0.74 14.96 16 37 H 0.44 7.01 8.30 -92.71 -0.77 6.24 16 38 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.13 3.20 6.51 -2.91 -0.02 3.18 16 41 H 0.42 8.05 8.89 -92.71 -0.82 7.22 16 42 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -70.96 360.59 -0.68 -71.64 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -1.38 Total: 31.83 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.24 Total: 14.86 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -5.22 Total: -111.97 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -1.13 Total: -55.56 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.81 Total: 49.20 kcal Total: -70.96 -0.68 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615215580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.600 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds