Wall clock time and date at job start Wed Apr 1 2020 04:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37662 * 119.95977 * 2 1 4 4 C 1.39796 * 119.92274 * 179.97438 * 3 2 1 5 5 C 1.47440 * 120.08086 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00165 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00259 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00230 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.47020 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00166 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99597 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99690 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99979 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00187 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99675 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46917 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47128 * 119.99803 * 16 14 12 19 19 H 1.48504 * 109.47099 * 240.00054 * 16 14 12 20 20 C 1.39838 * 119.83761 * 359.72471 * 4 3 2 21 21 C 1.37611 * 119.92360 * 0.54801 * 20 4 3 22 22 C 1.39129 * 119.96409 * 179.97438 * 2 1 3 23 23 N 1.39399 * 119.91811 * 359.97438 * 22 2 1 24 24 C 1.47053 * 125.41671 * 270.02288 * 23 22 2 25 25 C 1.54100 * 103.86857 * 180.02562 * 24 23 22 26 26 N 1.47059 * 103.85857 * 0.02562 * 25 24 23 27 27 C 1.33948 * 109.18023 * 359.73357 * 26 25 24 28 28 O 1.21580 * 123.03986 * 180.26852 * 27 26 25 29 29 H 1.09002 * 109.47733 * 270.02567 * 1 2 3 30 30 H 1.09003 * 109.47651 * 30.02778 * 1 2 3 31 31 H 1.09006 * 109.47259 * 150.02588 * 1 2 3 32 32 H 1.08007 * 120.03558 * 359.94858 * 3 2 1 33 33 H 1.08999 * 109.47238 * 299.99919 * 8 7 5 34 34 H 1.09001 * 109.46944 * 60.00380 * 8 7 5 35 35 H 0.97000 * 120.00140 * 359.97438 * 11 9 8 36 36 H 0.97000 * 120.00006 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.04004 * 180.27546 * 20 4 3 38 38 H 1.08002 * 119.96512 * 179.73355 * 21 20 4 39 39 H 1.09006 * 110.54701 * 298.60347 * 24 23 22 40 40 H 1.09006 * 110.54560 * 61.40342 * 24 23 22 41 41 H 1.09001 * 110.54601 * 118.58977 * 25 24 23 42 42 H 1.08994 * 110.55211 * 241.40964 * 25 24 23 43 43 H 0.97002 * 125.40879 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1927 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3322 2.4671 0.0000 6 8 3.7268 3.5207 -0.0014 7 8 5.6796 2.4644 0.0010 8 6 6.3415 3.7568 0.0010 9 6 7.8352 3.5562 0.0028 10 8 8.2965 2.4345 0.0036 11 7 8.6583 4.6234 0.0036 12 6 10.0171 4.4410 0.0048 13 1 10.4278 3.4422 0.0055 14 6 10.8658 5.5412 0.0051 15 7 10.3660 6.7566 0.0047 16 14 12.7172 5.2927 0.0074 17 1 13.0215 3.8392 0.0094 18 1 13.3024 5.9198 -1.2048 19 1 13.2995 5.9215 1.2202 20 6 4.2873 -0.0217 0.0069 21 6 3.5936 -1.2101 0.0012 22 6 2.2018 -1.2053 0.0005 23 7 1.5023 -2.4111 0.0016 24 6 1.0748 -3.1472 1.2007 25 6 0.3561 -4.3878 0.6358 26 7 0.4556 -4.2194 -0.8217 27 6 1.1091 -3.0812 -1.0895 28 8 1.3284 -2.6932 -2.2207 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5135 32 1 1.6543 2.1280 -0.0008 33 1 6.0505 4.3140 -0.8895 34 1 6.0491 4.3148 0.8905 35 1 8.2894 5.5205 0.0026 36 1 10.9584 7.5246 0.0045 37 1 5.3673 -0.0262 0.0118 38 1 4.1297 -2.1477 0.0018 39 1 1.9385 -3.4437 1.7959 40 1 0.3881 -2.5444 1.7951 41 1 0.8631 -5.3000 0.9506 42 1 -0.6877 -4.4013 0.9494 43 1 0.1004 -4.8328 -1.4839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:32 Heat of formation + Delta-G solvation = -97.528527 kcal Electronic energy + Delta-G solvation = -29020.028280 eV Core-core repulsion = 24645.286156 eV Total energy + Delta-G solvation = -4374.742123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79360 -40.44940 -39.08314 -38.04991 -36.74085 -36.07462 -34.67007 -33.99239 -33.04432 -31.37770 -30.74670 -29.27626 -28.42400 -27.18626 -25.12407 -24.22968 -23.45846 -22.23748 -21.63055 -20.21520 -19.57201 -18.32144 -18.06510 -17.75725 -17.27120 -17.05159 -16.55111 -16.28738 -15.70879 -15.45935 -15.33515 -14.69148 -14.61862 -14.40793 -14.23020 -14.12179 -13.96880 -13.76120 -13.49290 -13.34001 -13.02095 -12.88510 -12.72652 -12.47721 -12.21395 -12.03940 -11.98004 -11.61622 -11.46153 -11.14536 -10.66328 -10.49605 -10.40865 -10.38240 -10.28919 -9.79141 -9.60826 -9.22581 -9.20042 -8.97568 -8.51579 -8.07413 -6.49138 -3.91043 0.37929 1.09011 2.04696 2.43440 2.67127 2.70955 3.12560 3.24658 3.32201 3.38291 3.50687 3.74938 3.82403 4.11833 4.30403 4.48285 4.54437 4.57132 4.68546 4.82873 4.93173 5.01156 5.06736 5.10216 5.16096 5.16737 5.27027 5.31489 5.35655 5.52369 5.58668 5.71135 5.80841 5.89327 6.05353 6.12862 6.16194 6.28551 6.57063 6.58402 6.75185 6.97033 7.48937 7.82439 7.96710 8.17483 8.49357 9.08070 9.40346 9.90086 10.68156 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001829 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.757015 B =15307.209526 C =16025.063184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.091 4.091 3 C -0.049 4.049 4 C -0.108 4.108 5 C 0.505 3.495 6 O -0.509 6.509 7 O -0.320 6.320 8 C 0.061 3.939 9 C 0.439 3.561 10 O -0.576 6.576 11 N -0.553 5.553 12 C -0.301 4.301 13 H 0.107 0.893 14 C 0.024 3.976 15 N -0.897 5.897 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.281 1.281 20 C -0.053 4.053 21 C -0.117 4.117 22 C 0.193 3.807 23 N -0.592 5.592 24 C 0.093 3.907 25 C 0.094 3.906 26 N -0.740 5.740 27 C 0.702 3.298 28 O -0.570 6.570 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.957 -19.321 4.893 31.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.067 4.067 4 C -0.109 4.109 5 C 0.350 3.650 6 O -0.400 6.400 7 O -0.234 6.234 8 C -0.016 4.016 9 C 0.224 3.776 10 O -0.460 6.460 11 N -0.190 5.190 12 C -0.431 4.431 13 H 0.125 0.875 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.072 4.072 21 C -0.136 4.136 22 C 0.102 3.898 23 N -0.327 5.327 24 C -0.029 4.029 25 C -0.032 4.032 26 N -0.403 5.403 27 C 0.403 3.597 28 O -0.446 6.446 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.170 0.830 38 H 0.152 0.848 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -23.498 -19.252 4.322 30.683 hybrid contribution 0.512 0.393 -0.133 0.659 sum -22.986 -18.859 4.189 30.026 Atomic orbital electron populations 1.20689 0.90196 1.03232 1.02294 1.19977 0.96824 0.91604 1.00829 1.21023 0.92002 0.98217 0.95488 1.19212 0.93145 0.91173 1.07401 1.21087 0.81566 0.89311 0.73075 1.90829 1.69784 1.33180 1.46160 1.86591 1.19079 1.34770 1.82986 1.22785 0.92929 0.82252 1.03663 1.19304 0.86126 0.86249 0.85934 1.90557 1.76732 1.23455 1.55244 1.41707 1.06397 1.07077 1.63834 1.19776 0.80093 0.95145 1.48039 0.87546 1.25319 1.01033 0.94540 0.96935 1.69623 1.36454 0.97909 1.49753 0.85739 0.81640 0.78821 0.77784 1.19092 1.20630 1.20644 1.21531 1.01654 0.90290 0.93720 1.21309 0.92690 0.99008 1.00624 1.17030 0.89600 0.82678 1.00466 1.44062 1.59631 1.22295 1.06755 1.22526 1.00021 0.91936 0.88433 1.22377 1.01688 0.98325 0.80773 1.45052 1.62180 1.24875 1.08217 1.15840 0.78749 0.80797 0.84315 1.91027 1.61782 1.71128 1.20650 0.90944 0.90895 0.91675 0.83816 0.89370 0.89385 0.77139 0.91687 0.82983 0.84755 0.89384 0.89540 0.89609 0.89684 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.76 36.00 0.35 -0.52 16 2 C -0.09 -0.97 5.89 -104.51 -0.62 -1.58 16 3 C -0.05 -0.58 9.23 -39.21 -0.36 -0.94 16 4 C -0.11 -1.50 5.87 -104.97 -0.62 -2.12 16 5 C 0.51 8.47 7.89 34.48 0.27 8.74 16 6 O -0.51 -9.19 16.13 -19.27 -0.31 -9.50 16 7 O -0.32 -6.07 9.00 -47.30 -0.43 -6.49 16 8 C 0.06 1.18 5.95 36.01 0.21 1.39 16 9 C 0.44 10.62 7.86 -10.98 -0.09 10.53 16 10 O -0.58 -15.95 16.08 -14.11 -0.23 -16.18 16 11 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 12 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 13 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 15 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 16 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.05 -0.68 9.60 -39.21 -0.38 -1.06 16 21 C -0.12 -1.31 9.95 -39.46 -0.39 -1.70 16 22 C 0.19 2.08 5.40 -83.74 -0.45 1.63 16 23 N -0.59 -5.23 2.04 -118.24 -0.24 -5.47 16 24 C 0.09 0.38 7.61 -3.17 -0.02 0.36 16 25 C 0.09 0.23 8.06 -3.16 -0.03 0.20 16 26 N -0.74 -4.43 6.37 -64.70 -0.41 -4.84 16 27 C 0.70 7.49 7.96 -88.39 -0.70 6.79 16 28 O -0.57 -8.99 17.65 5.30 0.09 -8.90 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 32 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.15 2.01 7.60 -52.48 -0.40 1.61 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.43 1.89 8.96 -40.82 -0.37 1.52 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -37.03 380.35 -8.37 -45.40 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.16 Total: 8.20 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -3.06 Total: 13.80 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.01 Total: -47.80 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.87 Total: -41.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.03 -8.37 -45.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.132 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds