Wall clock time and date at job start Wed Apr 1 2020 04:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37662 * 119.95977 * 2 1 4 4 C 1.39796 * 119.92274 * 179.97438 * 3 2 1 5 5 C 1.47440 * 120.08086 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00165 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00259 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00230 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.47020 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00166 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99597 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99690 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99979 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00187 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99675 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46917 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47128 * 119.99803 * 16 14 12 19 19 H 1.48504 * 109.47099 * 240.00054 * 16 14 12 20 20 C 1.39838 * 119.83761 * 359.72471 * 4 3 2 21 21 C 1.37611 * 119.92360 * 0.54801 * 20 4 3 22 22 C 1.39129 * 119.96409 * 179.97438 * 2 1 3 23 23 N 1.39399 * 119.91811 * 359.97438 * 22 2 1 24 24 C 1.47053 * 125.41671 * 270.02288 * 23 22 2 25 25 C 1.54100 * 103.86857 * 180.02562 * 24 23 22 26 26 N 1.47059 * 103.85857 * 0.02562 * 25 24 23 27 27 C 1.33948 * 109.18023 * 359.73357 * 26 25 24 28 28 O 1.21580 * 123.03986 * 180.26852 * 27 26 25 29 29 H 1.09002 * 109.47733 * 270.02567 * 1 2 3 30 30 H 1.09003 * 109.47651 * 30.02778 * 1 2 3 31 31 H 1.09006 * 109.47259 * 150.02588 * 1 2 3 32 32 H 1.08007 * 120.03558 * 359.94858 * 3 2 1 33 33 H 1.08999 * 109.47238 * 299.99919 * 8 7 5 34 34 H 1.09001 * 109.46944 * 60.00380 * 8 7 5 35 35 H 0.97000 * 120.00140 * 359.97438 * 11 9 8 36 36 H 0.97000 * 120.00006 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.04004 * 180.27546 * 20 4 3 38 38 H 1.08002 * 119.96512 * 179.73355 * 21 20 4 39 39 H 1.09006 * 110.54701 * 298.60347 * 24 23 22 40 40 H 1.09006 * 110.54560 * 61.40342 * 24 23 22 41 41 H 1.09001 * 110.54601 * 118.58977 * 25 24 23 42 42 H 1.08994 * 110.55211 * 241.40964 * 25 24 23 43 43 H 0.97002 * 125.40879 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1927 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3322 2.4671 0.0000 6 8 3.7268 3.5207 -0.0014 7 8 5.6796 2.4644 0.0010 8 6 6.3415 3.7568 0.0010 9 6 7.8352 3.5562 0.0028 10 8 8.2965 2.4345 0.0036 11 7 8.6583 4.6234 0.0036 12 6 10.0171 4.4410 0.0048 13 1 10.4278 3.4422 0.0055 14 6 10.8658 5.5412 0.0051 15 7 10.3660 6.7566 0.0047 16 14 12.7172 5.2927 0.0074 17 1 13.0215 3.8392 0.0094 18 1 13.3024 5.9198 -1.2048 19 1 13.2995 5.9215 1.2202 20 6 4.2873 -0.0217 0.0069 21 6 3.5936 -1.2101 0.0012 22 6 2.2018 -1.2053 0.0005 23 7 1.5023 -2.4111 0.0016 24 6 1.0748 -3.1472 1.2007 25 6 0.3561 -4.3878 0.6358 26 7 0.4556 -4.2194 -0.8217 27 6 1.1091 -3.0812 -1.0895 28 8 1.3284 -2.6932 -2.2207 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5135 32 1 1.6543 2.1280 -0.0008 33 1 6.0505 4.3140 -0.8895 34 1 6.0491 4.3148 0.8905 35 1 8.2894 5.5205 0.0026 36 1 10.9584 7.5246 0.0045 37 1 5.3673 -0.0262 0.0118 38 1 4.1297 -2.1477 0.0018 39 1 1.9385 -3.4437 1.7959 40 1 0.3881 -2.5444 1.7951 41 1 0.8631 -5.3000 0.9506 42 1 -0.6877 -4.4013 0.9494 43 1 0.1004 -4.8328 -1.4839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731246305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:31 Heat of formation + Delta-G solvation = -122.772765 kcal Electronic energy + Delta-G solvation = -29021.122952 eV Core-core repulsion = 24645.286156 eV Total energy + Delta-G solvation = -4375.836796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47622 -41.74240 -40.29045 -39.73956 -37.58270 -37.48480 -36.04356 -35.39711 -33.86377 -33.42473 -31.62825 -30.11809 -29.66147 -28.02476 -26.75902 -25.53450 -23.84730 -23.16294 -22.60492 -21.47728 -21.20031 -20.08723 -19.00824 -18.97585 -18.26715 -17.78677 -17.74605 -17.61616 -17.37914 -16.56770 -16.17919 -16.11408 -15.81981 -15.77913 -15.37905 -15.24797 -14.82484 -14.79562 -14.57630 -14.37550 -14.01059 -13.99358 -13.58655 -13.51394 -13.33381 -13.18577 -13.02179 -12.94210 -12.88134 -12.47172 -12.32140 -12.11254 -11.91420 -11.82734 -11.59307 -11.56585 -10.53059 -10.50001 -10.13634 -10.12426 -9.86885 -9.70511 -8.53076 -6.03649 -0.63155 0.18266 1.24778 1.26822 1.34248 1.43422 1.45048 1.58487 1.85591 1.95355 2.29043 2.48996 2.96381 3.00372 3.12382 3.52442 3.55754 3.64937 3.68576 3.99923 4.03135 4.10274 4.13992 4.20586 4.25294 4.30315 4.36943 4.53123 4.68610 4.71608 4.74983 4.88502 4.95127 4.96338 5.10797 5.14937 5.20936 5.29570 5.36768 5.43191 5.86349 5.88150 6.16721 6.38044 6.42711 6.54331 7.02094 7.38708 7.47114 7.92075 8.64165 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001829 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.757015 B =15307.209526 C =16025.063184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.091 4.091 3 C -0.046 4.046 4 C -0.129 4.129 5 C 0.508 3.492 6 O -0.525 6.525 7 O -0.337 6.337 8 C 0.071 3.929 9 C 0.437 3.563 10 O -0.617 6.617 11 N -0.557 5.557 12 C -0.337 4.337 13 H 0.085 0.915 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.269 1.269 20 C -0.059 4.059 21 C -0.119 4.119 22 C 0.195 3.805 23 N -0.594 5.594 24 C 0.085 3.915 25 C 0.096 3.904 26 N -0.728 5.728 27 C 0.693 3.307 28 O -0.633 6.633 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.400 0.600 36 H 0.281 0.719 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.564 -20.446 6.144 33.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.092 4.092 3 C -0.065 4.065 4 C -0.130 4.130 5 C 0.354 3.646 6 O -0.416 6.416 7 O -0.252 6.252 8 C -0.006 4.006 9 C 0.224 3.776 10 O -0.503 6.503 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.555 5.555 16 Si 0.822 3.178 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.194 1.194 20 C -0.078 4.078 21 C -0.138 4.138 22 C 0.104 3.896 23 N -0.328 5.328 24 C -0.036 4.036 25 C -0.027 4.027 26 N -0.390 5.390 27 C 0.393 3.607 28 O -0.514 6.514 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -25.157 -20.395 5.628 32.871 hybrid contribution 0.901 0.643 -0.484 1.208 sum -24.256 -19.751 5.144 31.701 Atomic orbital electron populations 1.20726 0.88080 1.03183 1.03936 1.20268 0.98301 0.90973 0.99680 1.21125 0.91103 0.99166 0.95089 1.19169 0.93816 0.90023 1.09979 1.21526 0.80581 0.90252 0.72221 1.90806 1.69663 1.33922 1.47239 1.86591 1.20552 1.34492 1.83537 1.22581 0.89467 0.82960 1.05597 1.20055 0.88116 0.85274 0.84166 1.90523 1.78113 1.24960 1.56735 1.41736 1.06096 1.07636 1.64001 1.19762 0.81513 0.94771 1.50580 0.89743 1.26143 1.05242 0.93982 0.95670 1.69679 1.38148 0.98472 1.49183 0.84785 0.76109 0.78476 0.78433 1.19568 1.19505 1.19378 1.21444 1.01203 0.90734 0.94434 1.21436 0.93217 0.98854 1.00288 1.17186 0.89654 0.83855 0.98889 1.44118 1.59003 1.21685 1.08035 1.22934 1.01203 0.92374 0.87071 1.22696 1.03580 0.98390 0.78050 1.45065 1.60473 1.23187 1.10304 1.16159 0.78993 0.81802 0.83699 1.90976 1.64338 1.72903 1.23167 0.88306 0.90353 0.92272 0.83097 0.87493 0.87189 0.76526 0.90957 0.84148 0.83472 0.88101 0.87618 0.87261 0.86847 0.71803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.76 71.23 0.70 -0.74 16 2 C -0.09 -1.82 5.89 -19.79 -0.12 -1.94 16 3 C -0.05 -1.08 9.23 22.51 0.21 -0.87 16 4 C -0.13 -3.64 5.87 -20.09 -0.12 -3.75 16 5 C 0.51 17.29 7.89 70.25 0.55 17.85 16 6 O -0.53 -18.91 16.13 19.80 0.32 -18.59 16 7 O -0.34 -13.07 9.00 -50.19 -0.45 -13.52 16 8 C 0.07 2.76 5.95 71.24 0.42 3.18 16 9 C 0.44 21.71 7.86 87.66 0.69 22.40 16 10 O -0.62 -35.45 16.08 15.74 0.25 -35.20 16 11 N -0.56 -28.92 5.29 -306.97 -1.62 -30.55 16 12 C -0.34 -19.10 9.68 84.04 0.81 -18.28 16 13 H 0.08 5.08 7.16 -2.91 -0.02 5.05 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.91 -48.88 13.05 21.66 0.28 -48.60 16 16 Si 1.00 42.38 29.55 68.60 2.03 44.40 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 C -0.06 -1.56 9.60 22.51 0.22 -1.35 16 21 C -0.12 -2.64 9.95 22.35 0.22 -2.42 16 22 C 0.20 4.03 5.40 38.38 0.21 4.24 16 23 N -0.59 -9.44 2.04 -646.72 -1.32 -10.76 16 24 C 0.08 0.42 7.61 86.65 0.66 1.08 16 25 C 0.10 0.10 8.06 86.64 0.70 0.80 16 26 N -0.73 -7.12 6.37 -477.34 -3.04 -10.17 16 27 C 0.69 14.07 7.96 179.57 1.43 15.50 16 28 O -0.63 -20.27 17.65 -3.97 -0.07 -20.34 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.06 0.93 6.95 -2.38 -0.02 0.91 16 32 H 0.15 3.24 7.64 -2.91 -0.02 3.22 16 33 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 34 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 35 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 36 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.14 3.97 7.60 -2.91 -0.02 3.95 16 38 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.44 3.04 8.96 -92.71 -0.83 2.21 16 Total: -1.00 -82.85 380.35 2.95 -79.90 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.47 Total: 27.78 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 7.05 Total: 35.65 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -5.70 Total: -100.07 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: 0.05 Total: -87.65 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -82.85 2.95 -79.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.875 kcal (2) G-P(sol) polarization free energy of solvation -82.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds