Wall clock time and date at job start Wed Apr 1 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99580 * 2 1 4 4 C 1.53002 * 109.46788 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47300 * 64.99823 * 4 3 2 6 6 C 1.35911 * 117.00110 * 180.02562 * 5 4 3 7 7 C 1.38772 * 119.98686 * 179.97438 * 6 5 4 8 8 C 1.38036 * 120.01184 * 179.97438 * 7 6 5 9 9 C 1.38879 * 119.98651 * 359.97438 * 8 7 6 10 10 N 1.40160 * 120.01218 * 179.97438 * 9 8 7 11 11 N 1.40108 * 125.55558 * 180.22682 * 10 9 8 12 12 C 1.31243 * 107.19607 * 180.14882 * 11 10 9 13 13 C 1.50706 * 126.68806 * 179.97438 * 12 11 10 14 14 C 1.40657 * 106.62724 * 359.65383 * 12 11 10 15 15 C 1.47567 * 126.05816 * 180.26007 * 14 12 11 16 16 O 1.21521 * 119.99902 * 0.02562 * 15 14 12 17 17 O 1.34749 * 119.99754 * 180.02562 * 15 14 12 18 18 C 1.34863 * 116.99887 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00364 * 359.97438 * 18 17 15 20 20 C 1.38791 * 120.00221 * 179.97438 * 18 17 15 21 21 N 1.31433 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00426 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46721 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46710 * 119.99773 * 22 20 18 25 25 H 1.48500 * 109.47189 * 239.99852 * 22 20 18 26 26 N 1.28706 * 125.55695 * 359.97438 * 10 9 8 27 27 C 1.38884 * 119.97721 * 0.28010 * 9 8 7 28 28 C 1.38035 * 119.98127 * 359.46580 * 27 9 8 29 29 H 1.09000 * 109.47349 * 300.00277 * 1 2 3 30 30 H 1.09001 * 109.47550 * 60.00393 * 1 2 3 31 31 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47221 * 60.00201 * 3 2 1 33 33 H 1.08998 * 109.47252 * 299.99131 * 3 2 1 34 34 H 1.09005 * 109.47108 * 304.99866 * 4 3 2 35 35 H 1.08998 * 109.47061 * 184.99889 * 4 3 2 36 36 H 1.07997 * 119.99351 * 359.97438 * 7 6 5 37 37 H 1.07998 * 120.00516 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47015 * 269.68784 * 13 12 11 39 39 H 1.09000 * 109.46646 * 29.67936 * 13 12 11 40 40 H 1.09000 * 109.47248 * 149.68654 * 13 12 11 41 41 H 0.97000 * 120.00187 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.01279 * 179.72339 * 27 9 8 43 43 H 1.08001 * 119.98920 * 180.25517 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3031 0.3974 -1.3807 7 6 5.7892 -0.1855 -2.5424 8 6 7.1473 -0.3701 -2.7063 9 6 8.0273 0.0283 -1.7084 10 7 9.4064 -0.1593 -1.8740 11 7 10.3939 0.1932 -0.9447 12 6 11.5524 -0.1379 -1.4652 13 6 12.9087 0.0481 -0.8351 14 6 11.2808 -0.7071 -2.7224 15 6 12.2804 -1.2335 -3.6718 16 8 13.4624 -1.1972 -3.3918 17 8 11.8826 -1.7544 -4.8491 18 6 12.8465 -2.2183 -5.6703 19 1 13.8831 -2.1619 -5.3724 20 6 12.5065 -2.7684 -6.8984 21 7 11.2450 -2.8376 -7.2608 22 14 13.8417 -3.4103 -8.0363 23 1 15.1693 -3.2181 -7.3993 24 1 13.6207 -4.8563 -8.2922 25 1 13.7963 -2.6675 -9.3213 26 7 9.9717 -0.6877 -2.9025 27 6 7.5399 0.6068 -0.5437 28 6 6.1819 0.7956 -0.3832 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 0.8428 35 1 3.9783 2.1766 0.0902 36 1 5.1048 -0.4949 -3.3185 37 1 7.5256 -0.8233 -3.6106 38 1 13.3106 1.0209 -1.1183 39 1 12.8156 -0.0047 0.2497 40 1 13.5808 -0.7374 -1.1808 41 1 11.0073 -3.2223 -8.1189 42 1 8.2234 0.9127 0.2346 43 1 5.8031 1.2492 0.5207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735168181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:05 Heat of formation + Delta-G solvation = -41.181409 kcal Electronic energy + Delta-G solvation = -28677.080910 eV Core-core repulsion = 24304.782181 eV Total energy + Delta-G solvation = -4372.298729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.87138 -41.32913 -40.86896 -39.23059 -38.30228 -37.37201 -35.22400 -34.40111 -33.68326 -32.36135 -31.78885 -30.62128 -29.01799 -27.70280 -27.24086 -25.90534 -24.70781 -23.66420 -22.75960 -22.19445 -21.47289 -19.91547 -19.61670 -19.14698 -18.72011 -17.83643 -17.73942 -17.23721 -16.86548 -16.58223 -16.39766 -16.19438 -16.17919 -15.98873 -15.50601 -15.10608 -14.67140 -14.62211 -14.51921 -14.41809 -14.06686 -13.77942 -13.72322 -13.55550 -13.26421 -13.16738 -12.78923 -12.71016 -12.49819 -12.41467 -12.29539 -12.17148 -12.01652 -11.98971 -11.83429 -11.49266 -11.24624 -10.90618 -10.73045 -10.65323 -10.28896 -9.00568 -8.57626 -6.36139 -0.63681 0.09536 0.41570 0.72020 0.74447 1.35467 1.41537 1.55802 2.01935 2.03422 2.07658 2.39281 2.52209 2.73358 2.82224 2.98210 3.47741 3.61202 3.68315 3.86868 3.96004 4.12579 4.13848 4.19380 4.32817 4.37368 4.43163 4.49230 4.52785 4.56968 4.64467 4.70011 4.71217 4.77874 4.83557 4.88452 4.88985 5.04555 5.10632 5.13297 5.31474 5.32799 5.66066 5.75885 6.18112 6.30772 6.44436 6.61310 6.85284 7.66845 8.63134 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.002043 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.321283 B =13702.075282 C =15496.028813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.057 3.943 4 C 0.046 3.954 5 O -0.315 6.315 6 C 0.144 3.856 7 C -0.133 4.133 8 C -0.078 4.078 9 C 0.081 3.919 10 N -0.153 5.153 11 N -0.283 5.283 12 C 0.105 3.895 13 C -0.067 4.067 14 C -0.048 4.048 15 C 0.480 3.520 16 O -0.548 6.548 17 O -0.226 6.226 18 C -0.419 4.419 19 H 0.095 0.905 20 C -0.006 4.006 21 N -0.898 5.898 22 Si 1.026 2.974 23 H -0.257 1.257 24 H -0.260 1.260 25 H -0.260 1.260 26 N -0.207 5.207 27 C -0.057 4.057 28 C -0.177 4.177 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.281 0.719 42 H 0.155 0.845 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 10.815 17.942 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.029 4.029 5 O -0.229 6.229 6 C 0.097 3.903 7 C -0.152 4.152 8 C -0.099 4.099 9 C -0.009 4.009 10 N -0.046 5.046 11 N -0.114 5.114 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.210 4.210 15 C 0.326 3.674 16 O -0.444 6.444 17 O -0.132 6.132 18 C -0.494 4.494 19 H 0.113 0.887 20 C -0.207 4.207 21 N -0.534 5.534 22 Si 0.844 3.156 23 H -0.180 1.180 24 H -0.185 1.185 25 H -0.184 1.184 26 N -0.053 5.053 27 C -0.078 4.078 28 C -0.196 4.196 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.173 0.827 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.639 10.730 17.911 29.358 hybrid contribution 1.194 -0.377 -0.939 1.566 sum -19.445 10.353 16.972 27.809 Atomic orbital electron populations 1.22903 0.79434 1.03627 1.01043 1.87926 1.21531 1.28705 1.95680 1.22779 0.90843 0.85243 1.03011 1.23321 0.94609 0.99743 0.85189 1.86159 1.18824 1.76768 1.41120 1.19134 0.83347 0.93984 0.93884 1.20377 0.93470 1.03047 0.98339 1.20801 0.92478 0.98460 0.98125 1.17737 0.74971 1.08692 0.99539 1.48390 1.06855 1.40876 1.08474 1.77792 0.95207 1.23411 1.14941 1.24007 0.97478 0.94151 0.90841 1.20507 0.85479 1.05065 1.01489 1.21880 0.89050 1.12002 0.98108 1.19553 0.86068 0.79729 0.82065 1.90586 1.17610 1.58848 1.77345 1.83999 1.40167 1.63877 1.25125 1.21735 0.88537 1.41124 0.98019 0.88711 1.26757 1.00635 0.95586 0.97726 1.70130 1.18766 1.41842 1.22674 0.84462 0.76222 0.78347 0.76616 1.18025 1.18482 1.18439 1.74000 1.08928 1.10665 1.11725 1.20846 0.96492 0.95926 0.94568 1.21395 0.91326 1.05701 1.01186 0.92331 0.93401 0.89313 0.88044 0.91841 0.90006 0.87262 0.82706 0.85189 0.87897 0.87120 0.89440 0.91005 0.82694 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.51 10.67 -144.34 -1.54 -8.05 16 3 C 0.06 0.53 6.32 71.98 0.45 0.98 16 4 C 0.05 0.46 5.12 71.98 0.37 0.83 16 5 O -0.32 -5.80 10.10 -87.91 -0.89 -6.69 16 6 C 0.14 2.92 6.69 22.53 0.15 3.07 16 7 C -0.13 -3.22 9.98 22.35 0.22 -3.00 16 8 C -0.08 -2.35 9.60 22.38 0.21 -2.14 16 9 C 0.08 2.55 6.74 38.12 0.26 2.81 16 10 N -0.15 -5.92 4.44 -51.10 -0.23 -6.15 16 11 N -0.28 -10.15 11.89 -46.70 -0.56 -10.70 16 12 C 0.10 3.99 7.35 43.24 0.32 4.30 16 13 C -0.07 -1.92 9.92 71.24 0.71 -1.21 16 14 C -0.05 -2.27 7.12 42.15 0.30 -1.97 16 15 C 0.48 26.56 7.90 70.28 0.56 27.12 16 16 O -0.55 -30.06 14.18 19.77 0.28 -29.78 16 17 O -0.23 -14.28 9.75 11.07 0.11 -14.17 16 18 C -0.42 -25.99 9.65 67.95 0.66 -25.34 16 19 H 0.10 5.79 6.86 -2.91 -0.02 5.77 16 20 C -0.01 -0.35 5.50 84.88 0.47 0.11 16 21 N -0.90 -54.77 13.67 21.63 0.30 -54.47 16 22 Si 1.03 43.75 29.55 68.60 2.03 45.77 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 N -0.21 -9.61 11.29 -48.65 -0.55 -10.16 16 27 C -0.06 -1.33 9.64 22.38 0.22 -1.11 16 28 C -0.18 -3.04 9.03 22.35 0.20 -2.83 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.73 7.66 -2.38 -0.02 0.71 16 35 H 0.11 0.49 7.66 -2.39 -0.02 0.47 16 36 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.13 4.50 7.67 -2.91 -0.02 4.48 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 2.85 6.58 -2.39 -0.02 2.84 16 41 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.16 3.19 7.67 -2.91 -0.02 3.17 16 43 H 0.18 1.57 6.29 -2.91 -0.02 1.55 16 Total: -1.00 -82.80 382.16 6.34 -76.46 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.06 Total: 14.85 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.34 Total: 3.10 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.04 Total: -81.49 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -2.04 Total: -58.70 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -82.80 6.34 -76.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735168181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.279 kcal (2) G-P(sol) polarization free energy of solvation -82.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds