Wall clock time and date at job start Wed Apr 1 2020 04:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38509 * 119.15985 * 2 1 4 4 C 1.39586 * 119.18916 * 179.75478 * 3 2 1 5 5 C 1.47791 * 121.11531 * 180.22191 * 4 3 2 6 6 O 1.21594 * 119.99935 * 236.05506 * 5 4 3 7 7 N 1.34773 * 119.99978 * 56.05309 * 5 4 3 8 8 C 1.36686 * 119.99877 * 185.15553 * 7 5 4 9 9 H 1.08005 * 120.00382 * 12.88692 * 8 7 5 10 10 C 1.39176 * 120.00163 * 192.88895 * 8 7 5 11 11 N 1.31287 * 119.99853 * 9.72554 * 10 8 7 12 12 Si 1.86801 * 120.00092 * 189.73194 * 10 8 7 13 13 H 1.48495 * 109.47440 * 59.99774 * 12 10 8 14 14 H 1.48498 * 109.47037 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47105 * 299.99291 * 12 10 8 16 16 C 1.46500 * 120.00293 * 5.16153 * 7 5 4 17 17 C 1.50698 * 109.47260 * 90.24659 * 16 7 5 18 18 O 1.20829 * 120.00164 * 0.02562 * 17 16 7 19 19 O 1.34230 * 119.99784 * 180.02562 * 17 16 7 20 20 C 1.40969 * 117.76937 * 0.52166 * 4 3 2 21 21 C 1.40499 * 119.26331 * 359.72030 * 20 4 3 22 22 N 1.31603 * 119.16657 * 180.27619 * 2 1 3 23 23 O 1.34843 * 106.85964 * 180.02562 * 21 20 4 24 24 N 1.41329 * 109.41532 * 0.02562 * 23 21 20 25 25 C 1.29840 * 109.70914 * 359.97438 * 24 23 21 26 26 C 1.50707 * 126.32937 * 179.97438 * 25 24 23 27 27 C 1.52998 * 109.47221 * 305.74696 * 26 25 24 28 28 C 1.52999 * 109.46948 * 65.74594 * 26 25 24 29 29 H 1.08998 * 109.47274 * 269.72378 * 1 2 3 30 30 H 1.09005 * 109.47421 * 29.73080 * 1 2 3 31 31 H 1.09004 * 109.47195 * 149.72475 * 1 2 3 32 32 H 1.08006 * 120.40715 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99731 * 179.97438 * 11 10 8 34 34 H 1.09002 * 109.47174 * 210.24677 * 16 7 5 35 35 H 1.08998 * 109.46403 * 330.24563 * 16 7 5 36 36 H 0.96707 * 116.99875 * 179.97438 * 19 17 16 37 37 H 1.09004 * 109.47027 * 185.74582 * 26 25 24 38 38 H 1.09003 * 109.47059 * 299.99712 * 27 26 25 39 39 H 1.09001 * 109.47028 * 59.99494 * 27 26 25 40 40 H 1.08994 * 109.46999 * 180.02562 * 27 26 25 41 41 H 1.09003 * 109.46903 * 59.99860 * 28 26 25 42 42 H 1.08994 * 109.47015 * 179.97438 * 28 26 25 43 43 H 1.09004 * 109.47247 * 299.99854 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.2096 0.0000 4 6 3.5778 1.2103 0.0052 5 6 4.3408 2.4759 0.0103 6 8 5.1615 2.6946 -0.8598 7 7 4.1269 3.3878 0.9794 8 6 4.7540 4.6012 0.9265 9 1 5.2503 4.9135 0.0195 10 6 4.7531 5.4342 2.0414 11 7 4.3214 4.9842 3.1967 12 14 5.3659 7.1927 1.8939 13 1 4.5396 7.9232 0.8996 14 1 5.2615 7.8656 3.2136 15 1 6.7834 7.1874 1.4514 16 6 3.2225 3.0786 2.0896 17 6 4.0036 2.4470 3.2130 18 8 5.1938 2.2735 3.0983 19 8 3.3771 2.0773 4.3410 20 6 4.2352 -0.0367 -0.0011 21 6 3.4713 -1.2159 -0.0062 22 7 2.1484 -1.1491 -0.0055 23 8 4.3417 -2.2457 -0.0110 24 7 5.6630 -1.7441 -0.0085 25 6 5.6386 -0.4460 -0.0028 26 6 6.8357 0.4696 0.0021 27 6 7.7519 0.1049 1.1719 28 6 7.6017 0.3144 -1.3132 29 1 -0.3634 -0.0050 1.0276 30 1 -0.3634 0.8924 -0.5097 31 1 -0.3634 -0.8875 -0.5181 32 1 1.6348 2.1408 0.0004 33 1 4.3211 5.5647 3.9738 34 1 2.7547 3.9972 2.4439 35 1 2.4523 2.3867 1.7487 36 1 3.9200 1.6761 5.0335 37 1 6.5030 1.5021 0.1093 38 1 7.2061 0.2154 2.1090 39 1 8.0844 -0.9276 1.0648 40 1 8.6174 0.7673 1.1757 41 1 6.9489 0.5742 -2.1466 42 1 8.4672 0.9769 -1.3099 43 1 7.9343 -0.7180 -1.4204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738321154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:26 Heat of formation + Delta-G solvation = -53.880480 kcal Electronic energy + Delta-G solvation = -32656.792057 eV Core-core repulsion = 28283.942655 eV Total energy + Delta-G solvation = -4372.849402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31094 -41.40745 -40.37296 -39.72941 -37.55249 -37.03094 -36.41356 -34.55585 -33.67679 -33.10538 -32.65310 -29.66170 -28.76890 -28.23113 -27.38103 -25.26350 -24.71769 -24.02698 -22.88381 -21.62905 -20.50816 -19.19843 -19.00640 -18.81637 -18.54400 -18.29762 -17.61267 -17.31557 -17.07458 -16.32240 -16.24730 -15.97708 -15.54447 -15.40989 -15.14726 -15.05322 -14.91619 -14.58022 -14.44169 -13.92949 -13.73660 -13.59680 -13.30915 -13.26747 -13.26472 -13.01612 -12.95022 -12.71261 -12.64495 -12.52687 -12.46923 -12.20647 -12.16042 -12.00963 -11.88966 -11.50817 -11.25506 -11.03187 -10.69346 -10.45755 -10.11177 -9.98800 -8.49239 -6.04523 -0.91492 -0.30984 0.68512 0.88169 1.31153 1.44185 1.53738 1.61092 1.78202 2.07909 2.30356 2.42725 2.50456 2.70565 2.88645 3.06337 3.25219 3.39677 3.52821 3.70878 3.89148 3.98802 4.10148 4.13800 4.17762 4.23013 4.53290 4.59704 4.65242 4.72406 4.75943 4.76668 4.86618 4.89838 4.93924 4.98167 5.00311 5.16135 5.19508 5.36455 5.39081 5.80561 5.83630 5.89972 6.25154 6.44242 6.93794 7.12362 7.36464 7.68963 8.51371 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.005339 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.291622 B = 5243.067374 C = 6274.252875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.213 3.787 3 C -0.187 4.187 4 C 0.018 3.982 5 C 0.472 3.528 6 O -0.590 6.590 7 N -0.411 5.411 8 C -0.324 4.324 9 H 0.094 0.906 10 C 0.006 3.994 11 N -0.890 5.890 12 Si 0.999 3.001 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.282 1.282 16 C 0.130 3.870 17 C 0.497 3.503 18 O -0.551 6.551 19 O -0.519 6.519 20 C -0.249 4.249 21 C 0.284 3.716 22 N -0.490 5.490 23 O -0.101 6.101 24 N -0.292 5.292 25 C 0.169 3.831 26 C -0.043 4.043 27 C -0.131 4.131 28 C -0.126 4.126 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.281 0.719 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -4.034 -0.355 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.070 3.930 3 C -0.207 4.207 4 C 0.005 3.995 5 C 0.261 3.739 6 O -0.476 6.476 7 N -0.127 5.127 8 C -0.451 4.451 9 H 0.111 0.889 10 C -0.196 4.196 11 N -0.530 5.530 12 Si 0.822 3.178 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.208 1.208 16 C 0.005 3.995 17 C 0.339 3.661 18 O -0.441 6.441 19 O -0.330 6.330 20 C -0.256 4.256 21 C 0.101 3.899 22 N -0.213 5.213 23 O -0.103 6.103 24 N -0.040 5.040 25 C -0.011 4.011 26 C -0.063 4.063 27 C -0.189 4.189 28 C -0.184 4.184 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.128 0.872 36 H 0.270 0.730 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.157 -5.701 -0.902 9.195 hybrid contribution 1.265 1.781 0.757 2.312 sum -5.892 -3.921 -0.145 7.079 Atomic orbital electron populations 1.21110 0.82681 1.06220 1.05970 1.22202 0.99281 0.84738 0.86763 1.22547 0.91311 1.02060 1.04807 1.20243 0.95096 0.92017 0.92156 1.17974 0.86108 0.83178 0.86596 1.90615 1.37659 1.78280 1.41074 1.43446 1.38393 1.12464 1.18377 1.19824 1.34136 0.91017 1.00150 0.88853 1.26033 0.96062 1.04057 0.93398 1.69613 1.45243 1.37743 1.00378 0.84889 0.78466 0.76401 0.78043 1.18305 1.19782 1.20777 1.21327 0.90844 1.03327 0.83957 1.23759 0.86936 0.72157 0.83207 1.90594 1.18251 1.53487 1.81748 1.84439 1.46563 1.74632 1.27416 1.21388 0.93076 0.95518 1.15638 1.20505 0.89963 0.85915 0.93492 1.66529 1.03672 1.31477 1.19642 1.89130 1.12484 1.27090 1.81609 1.79933 0.90287 1.10466 1.23288 1.24743 0.95324 0.92349 0.88699 1.20248 0.89658 0.97295 0.99051 1.21737 0.98973 1.02626 0.95536 1.21682 0.99967 1.02873 0.93847 0.86953 0.86596 0.88917 0.79674 0.90871 0.83803 0.87155 0.72987 0.88839 0.94296 0.90892 0.89916 0.93358 0.89705 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.15 71.24 0.72 -0.69 16 2 C 0.21 5.49 6.77 42.66 0.29 5.78 16 3 C -0.19 -5.45 7.29 22.66 0.17 -5.28 16 4 C 0.02 0.71 4.95 -19.76 -0.10 0.61 16 5 C 0.47 21.81 6.04 86.77 0.52 22.34 16 6 O -0.59 -30.61 14.54 -4.01 -0.06 -30.67 16 7 N -0.41 -19.01 2.10 -642.98 -1.35 -20.36 16 8 C -0.32 -16.27 9.45 84.16 0.80 -15.47 16 9 H 0.09 4.97 7.29 -2.91 -0.02 4.94 16 10 C 0.01 0.30 5.22 85.00 0.44 0.74 16 11 N -0.89 -41.20 8.36 21.70 0.18 -41.02 16 12 Si 1.00 38.22 29.57 68.60 2.03 40.24 16 13 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 14 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 16 C 0.13 5.18 5.09 85.63 0.44 5.62 16 17 C 0.50 21.06 6.33 71.24 0.45 21.51 16 18 O -0.55 -27.74 17.00 21.95 0.37 -27.36 16 19 O -0.52 -17.55 13.42 -51.42 -0.69 -18.24 16 20 C -0.25 -10.24 6.20 -20.00 -0.12 -10.36 16 21 C 0.28 10.93 8.64 85.15 0.74 11.67 16 22 N -0.49 -16.06 10.25 -296.41 -3.04 -19.10 16 23 O -0.10 -4.04 12.06 29.70 0.36 -3.69 16 24 N -0.29 -11.58 12.78 -43.69 -0.56 -12.13 16 25 C 0.17 6.91 5.99 44.92 0.27 7.18 16 26 C -0.04 -1.68 3.09 -11.54 -0.04 -1.72 16 27 C -0.13 -4.56 9.15 71.98 0.66 -3.90 16 28 C -0.13 -4.16 9.18 71.98 0.66 -3.50 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 0.98 8.07 -2.38 -0.02 0.96 16 31 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.19 4.17 7.57 -2.91 -0.02 4.14 16 33 H 0.28 12.39 8.31 -92.71 -0.77 11.62 16 34 H 0.14 5.80 6.11 -2.39 -0.01 5.78 16 35 H 0.11 3.57 4.54 -2.39 -0.01 3.56 16 36 H 0.41 10.72 9.10 -74.05 -0.67 10.05 16 37 H 0.09 4.42 4.61 -2.39 -0.01 4.41 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -69.68 365.65 3.56 -66.12 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.42 Total: 31.69 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 5.89 Total: 34.51 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -4.77 Total: -92.61 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -0.02 Total: -79.95 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Total: -69.68 3.56 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738321154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.237 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds