Wall clock time and date at job start Wed Apr 1 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34858 * 120.33158 * 2 1 4 4 N 1.35589 * 121.81391 * 179.72445 * 3 2 1 5 5 H 0.97002 * 118.79858 * 180.26355 * 4 3 2 6 6 C 1.34311 * 122.40133 * 0.53376 * 4 3 2 7 7 C 1.38077 * 120.36177 * 359.47265 * 6 4 3 8 8 C 1.47138 * 120.88822 * 180.27675 * 7 6 4 9 9 O 1.21538 * 119.99777 * 180.02562 * 8 7 6 10 10 O 1.34777 * 120.00139 * 0.02562 * 8 7 6 11 11 C 1.45199 * 117.00052 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47136 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00125 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00007 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99907 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47637 * 89.99915 * 15 14 12 17 17 H 1.08005 * 119.99394 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00347 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46860 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47107 * 119.99473 * 20 18 16 23 23 H 1.48498 * 109.47161 * 239.99876 * 20 18 16 24 24 C 1.46505 * 119.99967 * 359.97438 * 14 12 11 25 25 C 1.52992 * 109.47035 * 90.00465 * 24 14 12 26 26 C 1.47195 * 109.47210 * 180.02562 * 25 24 14 27 27 N 9.37481 * 108.53026 * 8.77015 * 6 1 2 28 28 C 1.41679 * 120.32503 * 179.97438 * 2 1 3 29 29 O 1.22081 * 121.07053 * 359.97438 * 28 2 1 30 30 H 1.09010 * 109.47055 * 270.02360 * 1 2 3 31 31 H 1.09000 * 109.46916 * 30.01489 * 1 2 3 32 32 H 1.08994 * 109.47462 * 150.01940 * 1 2 3 33 33 H 1.07997 * 119.09045 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.82328 * 179.75510 * 6 4 3 35 35 H 1.08997 * 109.47194 * 299.99957 * 11 10 8 36 36 H 1.09004 * 109.46995 * 60.00324 * 11 10 8 37 37 H 1.09008 * 109.47021 * 209.99565 * 15 14 12 38 38 H 1.08997 * 109.47199 * 329.99255 * 15 14 12 39 39 H 0.97001 * 119.99575 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.46940 * 210.00396 * 24 14 12 41 41 H 1.09003 * 109.46689 * 330.00283 * 24 14 12 42 42 H 1.09004 * 109.46908 * 300.00073 * 25 24 14 43 43 H 1.09003 * 109.47362 * 59.99805 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1640 0.0000 4 7 3.5435 1.1991 0.0055 5 1 3.9886 2.0609 0.0092 6 6 4.2923 0.0841 0.0008 7 6 3.6924 -1.1595 0.0009 8 6 4.5015 -2.3885 0.0018 9 8 3.9564 -3.4748 0.0013 10 8 5.8469 -2.3095 0.0031 11 6 6.5808 -3.5624 0.0045 12 6 8.0606 -3.2778 0.0053 13 8 8.4578 -2.1318 0.0042 14 7 8.9428 -4.2967 0.0061 15 6 10.3814 -4.0200 0.0073 16 6 10.8736 -3.9250 1.4286 17 1 10.1836 -4.0571 2.2489 18 6 12.2044 -3.6684 1.6816 19 7 13.0444 -3.5071 0.6827 20 14 12.8143 -3.5500 3.4434 21 1 11.6794 -3.7688 4.3758 22 1 13.8534 -4.5845 3.6780 23 1 13.3947 -2.2032 3.6767 24 6 8.4631 -5.6810 0.0068 25 6 8.2966 -6.1638 -1.4353 26 6 7.8140 -7.5544 -1.4346 27 7 7.4432 -8.6276 -1.4367 28 6 2.2223 -1.2229 0.0005 29 8 1.6379 -2.2947 0.0015 30 1 -0.3634 0.0004 1.0278 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6386 2.0938 0.0004 34 1 5.3696 0.1606 0.0015 35 1 6.3201 -4.1352 0.8945 36 1 6.3219 -4.1361 -0.8855 37 1 10.9068 -4.8255 -0.5060 38 1 10.5706 -3.0775 -0.5065 39 1 13.9806 -3.3262 0.8607 40 1 9.1849 -6.3154 0.5213 41 1 7.5031 -5.7325 0.5205 42 1 7.5747 -5.5294 -1.9497 43 1 9.2566 -6.1122 -1.9490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782176521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:42 Heat of formation + Delta-G solvation = -91.562619 kcal Electronic energy + Delta-G solvation = -29357.652088 eV Core-core repulsion = 24983.168665 eV Total energy + Delta-G solvation = -4374.483422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29751 -40.10288 -39.02682 -37.99221 -36.86454 -36.01996 -35.24552 -33.80717 -32.95896 -31.99487 -30.89583 -29.22695 -27.76374 -26.80026 -24.69114 -24.06321 -23.27462 -22.75761 -21.06173 -19.24742 -18.79243 -18.13447 -17.70465 -17.20155 -16.66574 -16.55971 -16.40836 -16.32705 -15.90889 -15.42708 -15.23098 -14.72901 -14.43970 -14.33166 -14.15618 -13.72729 -13.64482 -13.57318 -13.20726 -13.02186 -12.85982 -12.75830 -12.59697 -12.44431 -12.29946 -12.16619 -12.07147 -11.74755 -11.34030 -11.02465 -10.95252 -10.70131 -10.54919 -10.53994 -10.24024 -9.92869 -9.74996 -9.55924 -9.13081 -8.52420 -8.38378 -7.96263 -6.13979 -4.18643 0.43727 0.98679 2.27699 2.46685 2.56696 2.76416 2.86209 3.12666 3.25245 3.33489 3.37479 3.51981 3.63807 3.96984 4.16483 4.24592 4.37293 4.47322 4.56083 4.82642 4.89323 4.95658 5.06836 5.14128 5.16246 5.20579 5.22543 5.30497 5.36386 5.48515 5.51621 5.79146 5.81562 5.91130 6.04560 6.25618 6.40851 6.44621 6.84050 7.25408 7.33889 7.61589 7.81572 7.83102 7.92568 8.09679 8.12009 8.70963 8.88269 9.47125 10.94204 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.002650 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.405620 B =10562.220191 C =12586.224348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.228 4.228 3 C 0.115 3.885 4 N -0.576 5.576 5 H 0.427 0.573 6 C 0.212 3.788 7 C -0.300 4.300 8 C 0.519 3.481 9 O -0.486 6.486 10 O -0.338 6.338 11 C 0.050 3.950 12 C 0.512 3.488 13 O -0.514 6.514 14 N -0.591 5.591 15 C 0.246 3.754 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.112 3.888 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.442 5.442 28 C 0.414 3.586 29 O -0.475 6.475 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.189 0.811 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 12.891 -3.795 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.234 4.234 3 C -0.010 4.010 4 N -0.180 5.180 5 H 0.264 0.736 6 C 0.078 3.922 7 C -0.309 4.309 8 C 0.362 3.638 9 O -0.373 6.373 10 O -0.255 6.255 11 C -0.028 4.028 12 C 0.296 3.704 13 O -0.389 6.389 14 N -0.325 5.325 15 C 0.128 3.872 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.014 4.014 25 C -0.092 4.092 26 C -0.102 4.102 27 N -0.119 5.119 28 C 0.299 3.701 29 O -0.355 6.355 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.206 0.794 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.463 11.017 -3.837 22.692 hybrid contribution 0.969 0.734 0.980 1.561 sum -18.494 11.751 -2.857 22.097 Atomic orbital electron populations 1.20407 0.88589 1.03155 1.02585 1.21105 0.98457 0.93103 1.10751 1.21594 0.82496 1.00293 0.96569 1.40858 1.06019 1.09847 1.61327 0.73584 1.22719 0.98301 0.85259 0.85928 1.21469 0.95809 0.90203 1.23428 1.20278 0.80521 0.88956 0.74023 1.90911 1.72556 1.28959 1.44831 1.86534 1.18999 1.35193 1.84759 1.22923 0.90752 0.84645 1.04469 1.19756 0.86254 0.86065 0.78275 1.90702 1.79648 1.20398 1.48181 1.48152 1.09163 1.03446 1.71700 1.19421 0.71674 0.98273 0.97878 1.21450 0.93796 1.49363 0.92230 0.92213 1.24913 0.96655 0.94948 0.97442 1.69928 1.04055 1.48499 1.30701 0.86451 0.78754 0.77727 0.84559 1.19751 1.20955 1.20891 1.21412 1.01624 0.84985 0.93425 1.19878 1.03913 0.84121 1.01310 1.28997 0.93091 0.94860 0.93274 1.81187 1.09691 1.12589 1.08424 1.18012 0.86258 0.89370 0.76444 1.90825 1.71140 1.31675 1.41862 0.91161 0.91592 0.90473 0.81483 0.79394 0.88486 0.88715 0.94308 0.93351 0.92674 0.88200 0.90505 0.87610 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.83 36.01 0.35 -0.26 16 2 C -0.23 -1.93 5.89 -104.51 -0.62 -2.54 16 3 C 0.11 0.46 10.73 -17.09 -0.18 0.28 16 4 N -0.58 -1.90 5.16 -12.73 -0.07 -1.97 16 5 H 0.43 -0.35 8.87 -40.82 -0.36 -0.71 16 6 C 0.21 1.51 10.81 -16.53 -0.18 1.34 16 7 C -0.30 -3.72 6.05 -102.73 -0.62 -4.34 16 8 C 0.52 8.10 7.90 34.34 0.27 8.37 16 9 O -0.49 -9.19 15.36 -26.08 -0.40 -9.59 16 10 O -0.34 -5.16 9.03 -47.38 -0.43 -5.59 16 11 C 0.05 0.73 4.51 36.01 0.16 0.89 16 12 C 0.51 9.35 7.75 -10.99 -0.09 9.26 16 13 O -0.51 -11.50 16.08 -14.10 -0.23 -11.73 16 14 N -0.59 -10.58 2.46 -175.06 -0.43 -11.01 16 15 C 0.25 5.62 5.16 -5.19 -0.03 5.59 16 16 C -0.53 -13.76 9.39 -34.44 -0.32 -14.09 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 20 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.11 1.49 5.17 -4.04 -0.02 1.47 16 25 C -0.05 -0.55 6.02 -29.52 -0.18 -0.72 16 26 C 0.22 2.77 15.43 -20.78 -0.32 2.45 16 27 N -0.44 -6.89 18.53 42.13 0.78 -6.11 16 28 C 0.41 5.61 6.95 -34.66 -0.24 5.36 16 29 O -0.47 -8.62 15.63 -15.19 -0.24 -8.86 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 33 H 0.17 -0.04 8.06 -52.49 -0.42 -0.46 16 34 H 0.19 1.10 7.62 -52.49 -0.40 0.70 16 35 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 36 H 0.09 1.18 7.18 -51.93 -0.37 0.81 16 37 H 0.04 0.88 8.07 -51.92 -0.42 0.46 16 38 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 42 H 0.11 0.95 7.22 -51.93 -0.37 0.58 16 43 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -40.75 387.97 -6.63 -47.38 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -5.08 Total: -4.66 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -2.10 Total: 14.64 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 1.02 Total: -43.22 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.29 Total: -35.77 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -40.75 -6.63 -47.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782176521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.183 kcal (2) G-P(sol) polarization free energy of solvation -40.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds