Wall clock time and date at job start Wed Apr 1 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 H 1.09000 * 109.46821 * 306.53291 * 3 2 1 5 5 N 1.46501 * 109.47162 * 66.53127 * 3 2 1 6 6 C 1.34775 * 120.00090 * 275.00186 * 5 3 2 7 7 O 1.21584 * 120.00164 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00118 * 180.02562 * 6 5 3 9 9 C 1.39460 * 120.00171 * 185.20564 * 8 6 5 10 10 C 1.38639 * 119.64702 * 174.66209 * 9 8 6 11 11 C 1.40828 * 118.67097 * 180.27469 * 10 9 8 12 12 C 1.41550 * 120.99596 * 179.70530 * 11 10 9 13 13 H 1.07994 * 119.99868 * 31.62202 * 12 11 10 14 14 C 1.40027 * 119.99817 * 211.63018 * 12 11 10 15 15 N 1.30745 * 120.00412 * 6.69231 * 14 12 11 16 16 Si 1.86799 * 119.99789 * 186.69947 * 14 12 11 17 17 H 1.48500 * 109.47159 * 90.00004 * 16 14 12 18 18 H 1.48504 * 109.47080 * 209.99644 * 16 14 12 19 19 H 1.48499 * 109.47235 * 329.99563 * 16 14 12 20 20 C 1.41161 * 118.00293 * 359.46880 * 11 10 9 21 21 C 1.36589 * 119.13088 * 0.55684 * 20 11 10 22 22 N 1.32071 * 121.25493 * 359.69765 * 21 20 11 23 23 C 1.52996 * 109.47403 * 186.53367 * 3 2 1 24 24 H 1.09001 * 109.46988 * 301.94315 * 23 3 2 25 25 O 1.42904 * 109.47172 * 61.93783 * 23 3 2 26 26 C 1.52996 * 109.47596 * 181.94475 * 23 3 2 27 27 F 1.39898 * 109.47147 * 65.75384 * 26 23 3 28 28 F 1.39898 * 109.47387 * 185.75815 * 26 23 3 29 29 F 1.39904 * 109.46648 * 305.75405 * 26 23 3 30 30 H 1.09003 * 109.47209 * 299.99999 * 1 2 3 31 31 H 1.09001 * 109.47077 * 60.00039 * 1 2 3 32 32 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47081 * 239.99627 * 2 1 3 34 34 H 1.09001 * 109.47077 * 119.99960 * 2 1 3 35 35 H 0.97000 * 119.99755 * 95.00471 * 5 3 2 36 36 H 0.96997 * 119.99998 * 5.20525 * 8 6 5 37 37 H 1.08000 * 120.66511 * 0.02562 * 10 9 8 38 38 H 0.96992 * 120.00249 * 180.02562 * 15 14 12 39 39 H 1.08009 * 120.43221 * 180.28043 * 20 11 10 40 40 H 1.08000 * 119.37247 * 179.73019 * 21 20 11 41 41 H 0.96705 * 113.99231 * 60.00495 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 7 1.6842 2.0862 1.2670 6 6 0.4702 2.6520 1.4178 7 8 -0.3295 2.6284 0.5023 8 7 0.1431 3.2447 2.5832 9 6 -1.1483 3.7338 2.7784 10 6 -1.5095 4.2413 4.0170 11 6 -2.8205 4.7245 4.1930 12 6 -3.2436 5.2475 5.4384 13 1 -2.5368 5.7523 6.0802 14 6 -4.5785 5.1103 5.8383 15 7 -5.4034 4.3879 5.1261 16 14 -5.1808 5.9594 7.3893 17 1 -5.6819 7.3151 7.0486 18 1 -6.2788 5.1636 7.9947 19 1 -4.0608 6.0744 8.3575 20 6 -3.6985 4.6761 3.0887 21 6 -3.2522 4.1575 1.9065 22 7 -2.0169 3.7081 1.7783 23 6 3.5611 1.4457 -0.1641 24 1 4.0148 0.8700 0.6427 25 8 3.9059 0.8584 -1.4205 26 6 4.0764 2.8854 -0.1155 27 9 3.8557 3.4169 1.1596 28 9 5.4469 2.9000 -0.3960 29 9 3.3978 3.6558 -1.0659 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3223 2.1054 1.9972 36 1 0.8058 3.3311 3.2862 37 1 -0.8008 4.2621 4.8317 38 1 -6.3281 4.2932 5.4029 39 1 -4.7113 5.0404 3.1787 40 1 -3.9220 4.1146 1.0604 41 1 3.5354 1.3200 -2.1852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:58 Heat of formation + Delta-G solvation = -190.365686 kcal Electronic energy + Delta-G solvation = -31268.187139 eV Core-core repulsion = 26347.562554 eV Total energy + Delta-G solvation = -4920.624585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.43152 -47.93495 -47.91598 -40.26591 -38.75891 -37.80140 -35.43253 -34.30773 -33.62981 -32.05809 -30.65222 -30.23575 -28.35802 -26.12639 -25.92688 -22.95391 -22.48962 -21.76448 -21.18009 -20.27704 -19.00742 -18.91211 -18.63505 -18.09271 -17.88133 -16.71491 -16.10031 -15.71611 -15.40009 -15.08280 -14.82581 -14.74950 -14.47657 -14.37956 -14.30078 -14.14997 -14.04350 -14.01337 -13.85169 -13.59914 -13.55144 -13.04819 -12.79969 -12.42365 -12.32894 -12.11457 -11.83851 -11.44339 -11.40338 -11.26276 -10.98694 -10.89588 -10.75642 -10.36299 -10.05048 -9.75256 -9.58725 -9.38787 -8.97102 -7.96817 -7.74358 -7.04358 -6.74716 -4.62638 2.26063 2.64284 2.70188 2.78153 3.03289 3.06070 3.21737 3.26690 3.32588 3.56184 3.76297 3.87464 3.94092 4.24193 4.39736 4.53515 4.71687 4.86028 5.04167 5.37040 5.55353 5.66639 5.77957 5.91151 6.02409 6.19184 6.43134 6.46506 6.56013 6.65088 6.68724 6.74770 6.92294 7.09328 7.17581 7.41290 7.50951 7.89332 8.05703 8.26382 8.46970 8.72553 8.76346 9.05086 9.68974 10.14735 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.002485 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.005378 B =11266.024858 C =11913.833675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.134 3.866 4 H 0.105 0.895 5 N -0.752 5.752 6 C 0.696 3.304 7 O -0.519 6.519 8 N -0.668 5.668 9 C 0.364 3.636 10 C -0.300 4.300 11 C 0.150 3.850 12 C -0.462 4.462 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.797 5.797 16 Si 0.916 3.084 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.216 4.216 21 C 0.103 3.897 22 N -0.546 5.546 23 C 0.067 3.933 24 H 0.145 0.855 25 O -0.521 6.521 26 C 0.420 3.580 27 F -0.175 7.175 28 F -0.178 7.178 29 F -0.178 7.178 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.403 0.597 37 H 0.102 0.898 38 H 0.282 0.718 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.327 -6.500 -7.332 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.027 3.973 4 H 0.123 0.877 5 N -0.413 5.413 6 C 0.395 3.605 7 O -0.389 6.389 8 N -0.316 5.316 9 C 0.135 3.865 10 C -0.326 4.326 11 C 0.142 3.858 12 C -0.493 4.493 13 H 0.098 0.902 14 C -0.142 4.142 15 N -0.423 5.423 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.239 4.239 21 C -0.047 4.047 22 N -0.266 5.266 23 C 0.005 3.995 24 H 0.163 0.837 25 O -0.326 6.326 26 C 0.365 3.635 27 F -0.156 7.156 28 F -0.160 7.160 29 F -0.159 7.159 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 15.925 -7.366 -8.711 19.590 hybrid contribution -0.107 1.390 2.056 2.484 sum 15.818 -5.976 -6.655 18.172 Atomic orbital electron populations 1.21782 0.93588 1.00613 1.04182 1.21882 0.98010 0.93844 1.02614 1.21480 0.90589 0.96225 0.88956 0.87676 1.45242 1.16992 1.62933 1.16181 1.15926 0.81802 0.78942 0.83800 1.91044 1.48209 1.60866 1.38763 1.42543 1.12143 1.60488 1.16421 1.17758 0.83735 0.94465 0.90561 1.21262 1.00222 1.15548 0.95591 1.17590 0.89318 0.86179 0.92731 1.19522 0.94421 1.33091 1.02292 0.90199 1.25915 0.96378 0.93310 0.98627 1.69740 1.05831 1.29634 1.37104 0.86193 0.78990 0.79774 0.81038 1.19267 1.20220 1.18623 1.21988 1.02159 1.06992 0.92756 1.21630 0.91076 0.95632 0.96405 1.67203 1.03389 1.25175 1.30782 1.23471 0.96829 0.88022 0.91191 0.83717 1.86716 1.76233 1.55468 1.14221 1.21599 0.76046 0.91534 0.74280 1.93166 1.94292 1.88307 1.39842 1.93213 1.32313 1.97035 1.93420 1.93220 1.79743 1.78244 1.64739 0.91464 0.92024 0.93649 0.90441 0.91683 0.77117 0.76324 0.88027 0.90736 0.85651 0.85996 0.75977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.55 37.16 0.32 -1.61 16 2 C -0.12 -1.21 5.55 -26.73 -0.15 -1.36 16 3 C 0.13 1.32 1.81 -67.93 -0.12 1.20 16 4 H 0.11 1.23 7.16 -51.93 -0.37 0.86 16 5 N -0.75 -8.76 3.96 -58.68 -0.23 -8.99 16 6 C 0.70 11.91 7.16 -86.92 -0.62 11.29 16 7 O -0.52 -10.90 11.75 5.29 0.06 -10.84 16 8 N -0.67 -11.93 5.40 -15.86 -0.09 -12.01 16 9 C 0.36 8.34 7.42 -154.68 -1.15 7.19 16 10 C -0.30 -7.09 9.74 -38.45 -0.37 -7.46 16 11 C 0.15 3.91 5.55 -106.55 -0.59 3.32 16 12 C -0.46 -11.80 9.11 -37.65 -0.34 -12.14 16 13 H 0.08 1.95 7.86 -52.49 -0.41 1.53 16 14 C 0.08 1.84 5.33 -17.34 -0.09 1.75 16 15 N -0.80 -20.11 10.92 55.55 0.61 -19.50 16 16 Si 0.92 18.12 29.56 -169.99 -5.03 13.10 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 20 C -0.22 -5.55 8.69 -39.07 -0.34 -5.89 16 21 C 0.10 2.54 11.10 -18.04 -0.20 2.34 16 22 N -0.55 -13.63 7.86 -12.76 -0.10 -13.73 16 23 C 0.07 0.49 2.70 -26.73 -0.07 0.42 16 24 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 25 O -0.52 -3.52 12.50 -35.23 -0.44 -3.96 16 26 C 0.42 3.90 2.83 37.16 0.11 4.00 16 27 F -0.17 -1.75 14.92 2.25 0.03 -1.72 16 28 F -0.18 -1.75 17.17 2.25 0.04 -1.71 16 29 F -0.18 -1.95 16.42 2.25 0.04 -1.91 16 30 H 0.07 1.13 5.61 -51.93 -0.29 0.84 16 31 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.64 7.55 -51.93 -0.39 0.25 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.39 3.55 7.32 -40.82 -0.30 3.25 16 36 H 0.40 5.61 8.72 -40.82 -0.36 5.26 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 39 H 0.13 3.28 6.43 -52.48 -0.34 2.94 16 40 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 41 H 0.39 1.60 8.86 45.56 0.40 2.00 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -32.08 353.57 -7.13 -39.20 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -3.72 Total: 13.69 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -3.63 Total: 3.05 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.19 Total: -54.23 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.38 Total: -14.80 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.08 -7.13 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.163 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds