Wall clock time and date at job start Wed Apr 1 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 H 1.09000 * 109.46821 * 306.53291 * 3 2 1 5 5 N 1.46501 * 109.47162 * 66.53127 * 3 2 1 6 6 C 1.34775 * 120.00090 * 275.00186 * 5 3 2 7 7 O 1.21584 * 120.00164 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00118 * 180.02562 * 6 5 3 9 9 C 1.39460 * 120.00171 * 185.20564 * 8 6 5 10 10 C 1.38639 * 119.64702 * 174.66209 * 9 8 6 11 11 C 1.40828 * 118.67097 * 180.27469 * 10 9 8 12 12 C 1.41550 * 120.99596 * 179.70530 * 11 10 9 13 13 H 1.07994 * 119.99868 * 31.62202 * 12 11 10 14 14 C 1.40027 * 119.99817 * 211.63018 * 12 11 10 15 15 N 1.30745 * 120.00412 * 6.69231 * 14 12 11 16 16 Si 1.86799 * 119.99789 * 186.69947 * 14 12 11 17 17 H 1.48500 * 109.47159 * 90.00004 * 16 14 12 18 18 H 1.48504 * 109.47080 * 209.99644 * 16 14 12 19 19 H 1.48499 * 109.47235 * 329.99563 * 16 14 12 20 20 C 1.41161 * 118.00293 * 359.46880 * 11 10 9 21 21 C 1.36589 * 119.13088 * 0.55684 * 20 11 10 22 22 N 1.32071 * 121.25493 * 359.69765 * 21 20 11 23 23 C 1.52996 * 109.47403 * 186.53367 * 3 2 1 24 24 H 1.09001 * 109.46988 * 301.94315 * 23 3 2 25 25 O 1.42904 * 109.47172 * 61.93783 * 23 3 2 26 26 C 1.52996 * 109.47596 * 181.94475 * 23 3 2 27 27 F 1.39898 * 109.47147 * 65.75384 * 26 23 3 28 28 F 1.39898 * 109.47387 * 185.75815 * 26 23 3 29 29 F 1.39904 * 109.46648 * 305.75405 * 26 23 3 30 30 H 1.09003 * 109.47209 * 299.99999 * 1 2 3 31 31 H 1.09001 * 109.47077 * 60.00039 * 1 2 3 32 32 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47081 * 239.99627 * 2 1 3 34 34 H 1.09001 * 109.47077 * 119.99960 * 2 1 3 35 35 H 0.97000 * 119.99755 * 95.00471 * 5 3 2 36 36 H 0.96997 * 119.99998 * 5.20525 * 8 6 5 37 37 H 1.08000 * 120.66511 * 0.02562 * 10 9 8 38 38 H 0.96992 * 120.00249 * 180.02562 * 15 14 12 39 39 H 1.08009 * 120.43221 * 180.28043 * 20 11 10 40 40 H 1.08000 * 119.37247 * 179.73019 * 21 20 11 41 41 H 0.96705 * 113.99231 * 60.00495 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 7 1.6842 2.0862 1.2670 6 6 0.4702 2.6520 1.4178 7 8 -0.3295 2.6284 0.5023 8 7 0.1431 3.2447 2.5832 9 6 -1.1483 3.7338 2.7784 10 6 -1.5095 4.2413 4.0170 11 6 -2.8205 4.7245 4.1930 12 6 -3.2436 5.2475 5.4384 13 1 -2.5368 5.7523 6.0802 14 6 -4.5785 5.1103 5.8383 15 7 -5.4034 4.3879 5.1261 16 14 -5.1808 5.9594 7.3893 17 1 -5.6819 7.3151 7.0486 18 1 -6.2788 5.1636 7.9947 19 1 -4.0608 6.0744 8.3575 20 6 -3.6985 4.6761 3.0887 21 6 -3.2522 4.1575 1.9065 22 7 -2.0169 3.7081 1.7783 23 6 3.5611 1.4457 -0.1641 24 1 4.0148 0.8700 0.6427 25 8 3.9059 0.8584 -1.4205 26 6 4.0764 2.8854 -0.1155 27 9 3.8557 3.4169 1.1596 28 9 5.4469 2.9000 -0.3960 29 9 3.3978 3.6558 -1.0659 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3223 2.1054 1.9972 36 1 0.8058 3.3311 3.2862 37 1 -0.8008 4.2621 4.8317 38 1 -6.3281 4.2932 5.4029 39 1 -4.7113 5.0404 3.1787 40 1 -3.9220 4.1146 1.0604 41 1 3.5354 1.3200 -2.1852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:58 Heat of formation + Delta-G solvation = -213.110217 kcal Electronic energy + Delta-G solvation = -31269.173416 eV Core-core repulsion = 26347.562554 eV Total energy + Delta-G solvation = -4921.610862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.19475 -48.72235 -48.67520 -41.59617 -40.15538 -38.93808 -36.55830 -35.87247 -35.31925 -33.16575 -32.55355 -31.12374 -29.97689 -27.88709 -27.00883 -24.02413 -23.67383 -23.59624 -22.26902 -21.68359 -19.89757 -19.75781 -19.60655 -19.37523 -19.17359 -17.96767 -17.28789 -16.94852 -16.73301 -16.53433 -16.09303 -15.89122 -15.68161 -15.51968 -15.25624 -15.09367 -15.06317 -14.88880 -14.81393 -14.79247 -14.74410 -14.55690 -14.19250 -13.98295 -13.68638 -13.17315 -12.96981 -12.88036 -12.81144 -12.67832 -12.31240 -12.07549 -11.89127 -11.81625 -11.51839 -11.38826 -11.19356 -11.11979 -10.08036 -9.89386 -9.60448 -8.83550 -8.57418 -6.57294 0.84097 1.00811 1.41443 1.48950 1.54486 1.56433 1.57846 2.21475 2.31568 2.56977 2.64657 2.79800 2.86928 3.12713 3.37705 3.51894 3.75279 3.84678 4.01993 4.12979 4.27812 4.46951 4.64909 4.73548 4.85574 4.91316 4.94323 5.05044 5.05737 5.15731 5.26567 5.45479 5.49988 5.52552 5.66264 5.85785 5.98547 6.24947 6.27595 6.55560 6.80412 6.85358 6.97570 7.62992 7.90215 8.33662 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.002485 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.005378 B =11266.024858 C =11913.833675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.133 3.867 4 H 0.086 0.914 5 N -0.730 5.730 6 C 0.694 3.306 7 O -0.560 6.560 8 N -0.660 5.660 9 C 0.366 3.634 10 C -0.309 4.309 11 C 0.123 3.877 12 C -0.489 4.489 13 H 0.086 0.914 14 C 0.034 3.966 15 N -0.828 5.828 16 Si 0.991 3.009 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.235 4.235 21 C 0.098 3.902 22 N -0.567 5.567 23 C 0.088 3.912 24 H 0.174 0.826 25 O -0.521 6.521 26 C 0.416 3.584 27 F -0.180 7.180 28 F -0.180 7.180 29 F -0.191 7.191 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.421 0.579 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.319 -7.349 -6.463 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.027 3.973 4 H 0.104 0.896 5 N -0.392 5.392 6 C 0.394 3.606 7 O -0.433 6.433 8 N -0.310 5.310 9 C 0.136 3.864 10 C -0.335 4.335 11 C 0.115 3.885 12 C -0.520 4.520 13 H 0.104 0.896 14 C -0.181 4.181 15 N -0.454 5.454 16 Si 0.811 3.189 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.179 1.179 20 C -0.259 4.259 21 C -0.053 4.053 22 N -0.286 5.286 23 C 0.026 3.974 24 H 0.192 0.808 25 O -0.327 6.327 26 C 0.361 3.639 27 F -0.162 7.162 28 F -0.161 7.161 29 F -0.173 7.173 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.259 0.741 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 18.009 -8.239 -7.849 21.303 hybrid contribution -0.661 1.602 1.681 2.414 sum 17.348 -6.638 -6.169 19.572 Atomic orbital electron populations 1.21687 0.96483 1.00288 1.01273 1.21827 0.95106 0.93810 1.04631 1.21597 0.92560 0.95956 0.87203 0.89615 1.44993 1.15241 1.61433 1.17511 1.16063 0.82893 0.78791 0.82882 1.91025 1.49976 1.62257 1.40002 1.42396 1.10839 1.60187 1.17582 1.17986 0.85089 0.93376 0.89976 1.21446 0.99959 1.15465 0.96595 1.17987 0.90528 0.86831 0.93185 1.19834 0.95651 1.34024 1.02518 0.89611 1.26839 0.95970 0.93398 1.01906 1.69813 1.06444 1.30327 1.38835 0.85062 0.78542 0.78533 0.76715 1.18716 1.19464 1.17851 1.21925 1.01841 1.08627 0.93507 1.21886 0.91578 0.95170 0.96626 1.67327 1.03694 1.25896 1.31728 1.23369 0.94476 0.87065 0.92538 0.80846 1.86717 1.76128 1.55463 1.14406 1.21971 0.75928 0.92254 0.73737 1.93151 1.94309 1.88543 1.40172 1.93210 1.32460 1.97062 1.93402 1.93200 1.80022 1.78815 1.65274 0.95184 0.94079 0.92636 0.88106 0.89847 0.75140 0.74114 0.85908 0.90005 0.86934 0.84540 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.55 71.98 0.62 -3.06 16 2 C -0.12 -1.94 5.55 30.59 0.17 -1.77 16 3 C 0.13 2.35 1.81 44.99 0.08 2.43 16 4 H 0.09 1.94 7.16 -2.39 -0.02 1.92 16 5 N -0.73 -15.77 3.96 -457.82 -1.81 -17.58 16 6 C 0.69 23.48 7.16 179.05 1.28 24.77 16 7 O -0.56 -23.93 11.75 -3.98 -0.05 -23.98 16 8 N -0.66 -23.19 5.40 -322.37 -1.74 -24.93 16 9 C 0.37 16.92 7.42 132.76 0.98 17.90 16 10 C -0.31 -14.70 9.74 23.00 0.22 -14.48 16 11 C 0.12 6.55 5.55 -21.11 -0.12 6.44 16 12 C -0.49 -25.31 9.11 23.52 0.21 -25.09 16 13 H 0.09 4.18 7.86 -2.91 -0.02 4.16 16 14 C 0.03 1.67 5.33 85.29 0.45 2.12 16 15 N -0.83 -42.48 10.92 21.84 0.24 -42.24 16 16 Si 0.99 36.73 29.56 68.60 2.03 38.76 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 20 C -0.24 -12.58 8.69 22.60 0.20 -12.38 16 21 C 0.10 5.01 11.10 84.27 0.94 5.94 16 22 N -0.57 -28.93 7.86 -194.27 -1.53 -30.46 16 23 C 0.09 1.02 2.70 30.59 0.08 1.10 16 24 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 25 O -0.52 -5.31 12.50 -148.98 -1.86 -7.17 16 26 C 0.42 6.81 2.83 71.98 0.20 7.01 16 27 F -0.18 -3.23 14.92 44.97 0.67 -2.56 16 28 F -0.18 -3.11 17.17 44.97 0.77 -2.34 16 29 F -0.19 -3.98 16.42 44.97 0.74 -3.25 16 30 H 0.03 1.01 5.61 -2.39 -0.01 0.99 16 31 H 0.04 1.22 7.93 -2.39 -0.02 1.20 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.30 7.55 -2.39 -0.02 1.29 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.41 6.30 7.32 -92.71 -0.68 5.62 16 36 H 0.42 11.12 8.72 -92.71 -0.81 10.31 16 37 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 38 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 39 H 0.11 6.18 6.43 -2.91 -0.02 6.16 16 40 H 0.14 6.30 8.06 -2.91 -0.02 6.28 16 41 H 0.40 2.24 8.86 -74.05 -0.66 1.59 16 Total: -1.00 -71.84 353.57 1.78 -70.06 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -1.00 Total: 34.75 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.33 Total: 10.93 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.84 Total: -115.21 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.91 Total: -31.14 kcal Atomic # 9 Polarization: -10.32 SS G_CDS: 2.18 Total: -8.14 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -71.84 1.78 -70.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.049 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds