Wall clock time and date at job start Wed Apr 1 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 C 1.52997 * 109.47426 * 240.00004 * 2 1 3 5 5 N 1.46498 * 109.46855 * 119.99932 * 2 1 3 6 6 C 1.34123 * 125.69592 * 75.27876 * 5 2 1 7 7 C 1.38628 * 107.33525 * 180.15378 * 6 5 2 8 8 C 1.46924 * 126.48534 * 179.89402 * 7 6 5 9 9 O 1.21413 * 120.00305 * 359.97438 * 8 7 6 10 10 C 1.49316 * 119.99520 * 179.71302 * 8 7 6 11 11 O 1.21359 * 120.00064 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99804 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47135 * 325.00366 * 13 12 10 15 15 C 1.50698 * 109.47526 * 205.00423 * 13 12 10 16 16 H 1.08001 * 119.99810 * 0.02562 * 15 13 12 17 17 C 1.37871 * 119.99883 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00532 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99970 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47380 * 89.99603 * 19 17 15 21 21 H 1.48494 * 109.47533 * 210.00034 * 19 17 15 22 22 H 1.48506 * 109.46734 * 329.99670 * 19 17 15 23 23 C 1.53000 * 109.47129 * 85.00009 * 13 12 10 24 24 F 1.39903 * 109.46675 * 59.99988 * 23 13 12 25 25 F 1.39895 * 109.47309 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47408 * 300.00759 * 23 13 12 27 27 C 1.41561 * 107.01841 * 359.63063 * 7 6 5 28 28 N 1.30351 * 107.99470 * 0.22728 * 27 7 6 29 29 H 1.09004 * 109.47327 * 300.00045 * 1 2 3 30 30 H 1.09009 * 109.47017 * 60.00004 * 1 2 3 31 31 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46765 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46981 * 299.99786 * 3 2 1 34 34 H 1.08993 * 109.46936 * 60.00254 * 3 2 1 35 35 H 1.09005 * 109.46874 * 300.00793 * 4 2 1 36 36 H 1.09005 * 109.47372 * 59.99644 * 4 2 1 37 37 H 1.08993 * 109.47476 * 180.02562 * 4 2 1 38 38 H 1.07994 * 126.33176 * 0.05141 * 6 5 2 39 39 H 0.96999 * 120.00047 * 0.02562 * 12 10 8 40 40 H 0.97005 * 120.00437 * 180.02562 * 18 17 15 41 41 H 1.08006 * 125.99954 * 180.20617 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0181 -2.0180 1.3883 7 6 2.5580 -2.2538 2.6432 8 6 2.7525 -3.5642 3.2784 9 8 2.4261 -4.5769 2.6935 10 6 3.3570 -3.6509 4.6410 11 8 3.6881 -2.6391 5.2235 12 7 3.5350 -4.8530 5.2240 13 6 4.1286 -4.9382 6.5605 14 1 4.8811 -4.1579 6.6743 15 6 4.7741 -6.2883 6.7385 16 1 4.7455 -7.0105 5.9359 17 6 5.4013 -6.6014 7.9257 18 7 5.4366 -5.7219 8.9027 19 14 6.2021 -8.2747 8.1460 20 1 7.6178 -8.2081 7.7030 21 1 6.1492 -8.6641 9.5780 22 1 5.4755 -9.2821 7.3319 23 6 3.0370 -4.7517 7.6162 24 9 2.0711 -5.7533 7.4701 25 9 3.6039 -4.8325 8.8926 26 9 2.4377 -3.4984 7.4511 27 6 2.8920 -0.9932 3.1940 28 7 2.5672 -0.0759 2.3268 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 1.6616 -2.7649 0.6945 39 1 3.2707 -5.6618 4.7582 40 1 5.8782 -5.9421 9.7379 41 1 3.3375 -0.8217 4.1629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928815920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:05 Heat of formation + Delta-G solvation = -129.714979 kcal Electronic energy + Delta-G solvation = -31219.928967 eV Core-core repulsion = 26301.934394 eV Total energy + Delta-G solvation = -4917.994573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.37906 -46.03189 -45.64111 -41.57744 -39.67291 -37.84522 -37.02551 -34.81714 -32.59948 -30.97793 -30.40577 -28.73286 -27.93787 -27.79230 -25.42008 -24.55852 -22.62108 -21.96738 -20.64761 -19.81507 -19.42988 -17.73941 -17.12944 -16.85029 -16.69704 -16.56283 -15.92031 -15.70301 -15.39240 -14.95043 -14.80861 -14.76155 -14.47762 -14.07942 -13.85147 -13.35292 -13.04298 -12.96965 -12.89152 -12.71186 -12.70215 -12.60872 -12.53940 -12.42674 -12.30365 -12.23366 -12.01122 -11.84720 -11.68937 -11.64068 -11.30735 -11.20733 -10.85978 -10.84812 -10.59274 -10.39286 -9.71644 -9.61026 -8.99740 -8.76054 -8.75316 -8.38927 -6.26229 -4.50353 0.95616 1.90672 2.12765 2.76942 3.18697 3.24019 3.26941 3.34240 3.77414 4.00605 4.19174 4.26163 4.36944 4.50658 4.53557 4.75748 4.90112 4.91557 4.96763 5.04976 5.14356 5.18025 5.24693 5.30282 5.35298 5.45817 5.52840 5.68914 5.76558 5.78760 5.82879 5.86397 6.16081 6.56756 6.72768 6.81580 6.98683 7.27856 7.44918 7.59842 7.60111 8.17752 8.44284 8.65169 9.17439 10.65389 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002615 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.084554 B =10704.673162 C =11102.757727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.131 3.869 7 C -0.312 4.312 8 C 0.428 3.572 9 O -0.449 6.449 10 C 0.480 3.520 11 O -0.510 6.510 12 N -0.683 5.683 13 C 0.242 3.758 14 H 0.090 0.910 15 C -0.554 4.554 16 H 0.080 0.920 17 C 0.066 3.934 18 N -0.839 5.839 19 Si 0.917 3.083 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.417 3.583 24 F -0.207 7.207 25 F -0.135 7.135 26 F -0.217 7.217 27 C 0.116 3.884 28 N -0.305 5.305 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.184 0.816 39 H 0.409 0.591 40 H 0.269 0.731 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 9.426 -17.663 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.093 3.907 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.129 5.129 6 C -0.022 4.022 7 C -0.325 4.325 8 C 0.302 3.698 9 O -0.323 6.323 10 C 0.262 3.738 11 O -0.386 6.386 12 N -0.334 5.334 13 C 0.137 3.863 14 H 0.108 0.892 15 C -0.590 4.590 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.472 5.472 19 Si 0.743 3.257 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.194 1.194 23 C 0.361 3.639 24 F -0.189 7.189 25 F -0.116 7.116 26 F -0.199 7.199 27 C -0.072 4.072 28 N -0.124 5.124 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.201 0.799 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.238 11.010 -17.679 22.049 hybrid contribution 0.013 -2.120 0.451 2.167 sum -7.225 8.890 -17.228 20.689 Atomic orbital electron populations 1.22287 0.92586 1.03366 1.03667 1.20868 0.94649 0.94082 0.81143 1.21913 1.02389 0.92560 1.03227 1.22292 1.02639 1.01145 0.96006 1.48893 1.45547 1.04117 1.14363 1.23061 0.95643 0.86810 0.96691 1.20512 1.19144 0.95321 0.97556 1.21639 0.74638 0.87354 0.86129 1.90543 1.39969 1.37869 1.63921 1.20543 0.80945 0.84862 0.87451 1.90641 1.49055 1.34653 1.64265 1.46048 1.60460 1.08011 1.18898 1.19879 0.88818 1.02435 0.75208 0.89222 1.20887 1.37893 0.98185 1.02069 0.90220 1.25074 0.95581 0.98659 0.95010 1.70390 1.37777 1.34307 1.04752 0.86184 0.79512 0.82317 0.77702 1.20142 1.20767 1.19427 1.23081 0.82892 0.71480 0.86430 1.93003 1.67087 1.62702 1.96147 1.93412 1.82480 1.95319 1.40370 1.93070 1.86234 1.44737 1.95879 1.24831 0.94439 0.88775 0.99113 1.77203 1.18859 1.22018 0.94287 0.91303 0.90156 0.91634 0.91428 0.90875 0.90734 0.91388 0.89810 0.91224 0.79913 0.75581 0.92030 0.77290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.72 37.16 0.32 -0.67 16 2 C 0.17 1.31 1.23 -131.82 -0.16 1.15 16 3 C -0.14 -1.02 8.07 37.16 0.30 -0.72 16 4 C -0.16 -0.89 8.28 37.16 0.31 -0.59 16 5 N -0.35 -3.93 3.40 -47.99 -0.16 -4.09 16 6 C 0.13 1.54 10.41 -16.41 -0.17 1.37 16 7 C -0.31 -4.67 6.12 -104.97 -0.64 -5.31 16 8 C 0.43 7.28 7.20 -31.46 -0.23 7.05 16 9 O -0.45 -7.78 17.03 5.44 0.09 -7.69 16 10 C 0.48 9.54 7.40 -11.65 -0.09 9.46 16 11 O -0.51 -10.94 12.82 5.49 0.07 -10.87 16 12 N -0.68 -14.40 4.98 -55.41 -0.28 -14.68 16 13 C 0.24 5.94 2.21 -69.09 -0.15 5.79 16 14 H 0.09 2.40 7.58 -51.93 -0.39 2.00 16 15 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 16 H 0.08 1.93 7.74 -52.49 -0.41 1.53 16 17 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 18 N -0.84 -22.69 9.50 55.43 0.53 -22.17 16 19 Si 0.92 20.04 29.54 -169.99 -5.02 15.01 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.42 10.60 2.81 37.16 0.10 10.71 16 24 F -0.21 -5.15 16.94 2.25 0.04 -5.11 16 25 F -0.13 -3.68 12.91 2.25 0.03 -3.65 16 26 F -0.22 -5.39 15.67 2.25 0.04 -5.35 16 27 C 0.12 1.76 11.13 -16.91 -0.19 1.57 16 28 N -0.31 -4.25 11.54 30.90 0.36 -3.89 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 35 H 0.07 0.34 7.33 -51.93 -0.38 -0.04 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.18 1.63 7.51 -52.49 -0.39 1.24 16 39 H 0.41 7.96 8.01 -40.82 -0.33 7.64 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.21 3.29 6.26 -52.48 -0.33 2.97 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -30.14 360.65 -4.59 -34.73 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.74 Total: 5.28 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -0.98 Total: 17.04 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.44 Total: -44.82 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 9 Polarization: -14.22 SS G_CDS: 0.10 Total: -14.11 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.14 -4.59 -34.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.982 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds