Wall clock time and date at job start Wed Apr 1 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 C 1.52997 * 109.47426 * 240.00004 * 2 1 3 5 5 N 1.46498 * 109.46855 * 119.99932 * 2 1 3 6 6 C 1.34123 * 125.69592 * 75.27876 * 5 2 1 7 7 C 1.38628 * 107.33525 * 180.15378 * 6 5 2 8 8 C 1.46924 * 126.48534 * 179.89402 * 7 6 5 9 9 O 1.21413 * 120.00305 * 359.97438 * 8 7 6 10 10 C 1.49316 * 119.99520 * 179.71302 * 8 7 6 11 11 O 1.21359 * 120.00064 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99804 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47135 * 325.00366 * 13 12 10 15 15 C 1.50698 * 109.47526 * 205.00423 * 13 12 10 16 16 H 1.08001 * 119.99810 * 0.02562 * 15 13 12 17 17 C 1.37871 * 119.99883 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00532 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99970 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47380 * 89.99603 * 19 17 15 21 21 H 1.48494 * 109.47533 * 210.00034 * 19 17 15 22 22 H 1.48506 * 109.46734 * 329.99670 * 19 17 15 23 23 C 1.53000 * 109.47129 * 85.00009 * 13 12 10 24 24 F 1.39903 * 109.46675 * 59.99988 * 23 13 12 25 25 F 1.39895 * 109.47309 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47408 * 300.00759 * 23 13 12 27 27 C 1.41561 * 107.01841 * 359.63063 * 7 6 5 28 28 N 1.30351 * 107.99470 * 0.22728 * 27 7 6 29 29 H 1.09004 * 109.47327 * 300.00045 * 1 2 3 30 30 H 1.09009 * 109.47017 * 60.00004 * 1 2 3 31 31 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46765 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46981 * 299.99786 * 3 2 1 34 34 H 1.08993 * 109.46936 * 60.00254 * 3 2 1 35 35 H 1.09005 * 109.46874 * 300.00793 * 4 2 1 36 36 H 1.09005 * 109.47372 * 59.99644 * 4 2 1 37 37 H 1.08993 * 109.47476 * 180.02562 * 4 2 1 38 38 H 1.07994 * 126.33176 * 0.05141 * 6 5 2 39 39 H 0.96999 * 120.00047 * 0.02562 * 12 10 8 40 40 H 0.97005 * 120.00437 * 180.02562 * 18 17 15 41 41 H 1.08006 * 125.99954 * 180.20617 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0181 -2.0180 1.3883 7 6 2.5580 -2.2538 2.6432 8 6 2.7525 -3.5642 3.2784 9 8 2.4261 -4.5769 2.6935 10 6 3.3570 -3.6509 4.6410 11 8 3.6881 -2.6391 5.2235 12 7 3.5350 -4.8530 5.2240 13 6 4.1286 -4.9382 6.5605 14 1 4.8811 -4.1579 6.6743 15 6 4.7741 -6.2883 6.7385 16 1 4.7455 -7.0105 5.9359 17 6 5.4013 -6.6014 7.9257 18 7 5.4366 -5.7219 8.9027 19 14 6.2021 -8.2747 8.1460 20 1 7.6178 -8.2081 7.7030 21 1 6.1492 -8.6641 9.5780 22 1 5.4755 -9.2821 7.3319 23 6 3.0370 -4.7517 7.6162 24 9 2.0711 -5.7533 7.4701 25 9 3.6039 -4.8325 8.8926 26 9 2.4377 -3.4984 7.4511 27 6 2.8920 -0.9932 3.1940 28 7 2.5672 -0.0759 2.3268 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 1.6616 -2.7649 0.6945 39 1 3.2707 -5.6618 4.7582 40 1 5.8782 -5.9421 9.7379 41 1 3.3375 -0.8217 4.1629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928815920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:04 Heat of formation + Delta-G solvation = -148.601736 kcal Electronic energy + Delta-G solvation = -31220.747959 eV Core-core repulsion = 26301.934394 eV Total energy + Delta-G solvation = -4918.813564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.43694 -48.07150 -47.74114 -42.61644 -41.13635 -39.31875 -37.74091 -36.62746 -34.49382 -31.94133 -31.49747 -30.59478 -28.37717 -28.36472 -26.87541 -26.45171 -23.92415 -23.27821 -22.25309 -20.97914 -20.68604 -19.25518 -18.92392 -18.69745 -18.47852 -17.96803 -17.59653 -17.00940 -16.67213 -16.55059 -16.11072 -15.86611 -15.62699 -15.13996 -14.99942 -14.86502 -14.76529 -14.57166 -14.47584 -14.31083 -14.29873 -14.04495 -13.94718 -13.89134 -13.31547 -13.20895 -13.12358 -13.10313 -12.83946 -12.74851 -12.71489 -12.62007 -12.24926 -12.22786 -12.14309 -11.65700 -11.62324 -10.69647 -10.59800 -10.51309 -10.20584 -9.83153 -8.22886 -6.53886 -0.31818 0.80596 1.27312 1.43961 1.47149 1.49119 1.59482 1.78695 2.31538 2.37598 2.52779 2.92514 3.16238 3.39498 3.68454 3.73825 3.75582 3.81975 3.84840 3.90032 3.98181 4.15155 4.35194 4.55197 4.60676 4.63504 4.71322 4.78329 4.82064 4.82665 4.84109 5.10025 5.20090 5.23436 5.26515 5.46068 5.46698 5.62120 5.84990 5.95725 6.47377 6.49843 6.57607 6.99315 7.19034 8.69717 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002615 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.084554 B =10704.673162 C =11102.757727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 C -0.142 4.142 4 C -0.160 4.160 5 N -0.339 5.339 6 C 0.155 3.845 7 C -0.339 4.339 8 C 0.440 3.560 9 O -0.454 6.454 10 C 0.474 3.526 11 O -0.529 6.529 12 N -0.684 5.684 13 C 0.249 3.751 14 H 0.061 0.939 15 C -0.566 4.566 16 H 0.090 0.910 17 C 0.019 3.981 18 N -0.871 5.871 19 Si 0.982 3.018 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.261 1.261 23 C 0.414 3.586 24 F -0.204 7.204 25 F -0.147 7.147 26 F -0.216 7.216 27 C 0.103 3.897 28 N -0.318 5.318 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.219 0.781 39 H 0.417 0.583 40 H 0.270 0.730 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 8.853 -20.629 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.082 3.918 3 C -0.199 4.199 4 C -0.218 4.218 5 N -0.117 5.117 6 C 0.000 4.000 7 C -0.352 4.352 8 C 0.316 3.684 9 O -0.329 6.329 10 C 0.258 3.742 11 O -0.406 6.406 12 N -0.336 5.336 13 C 0.143 3.857 14 H 0.079 0.921 15 C -0.602 4.602 16 H 0.108 0.892 17 C -0.187 4.187 18 N -0.505 5.505 19 Si 0.806 3.194 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.185 1.185 23 C 0.358 3.642 24 F -0.186 7.186 25 F -0.128 7.128 26 F -0.198 7.198 27 C -0.084 4.084 28 N -0.137 5.137 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.183 10.468 -20.682 24.582 hybrid contribution 0.240 -1.781 1.277 2.204 sum -7.943 8.688 -19.405 22.696 Atomic orbital electron populations 1.22301 0.91065 1.03911 1.04274 1.21407 0.95782 0.94232 0.80403 1.21931 1.01506 0.92592 1.03899 1.22328 1.02003 1.01826 0.95593 1.49355 1.43760 1.04209 1.14372 1.23483 0.93364 0.87541 0.95647 1.20392 1.21740 0.93906 0.99206 1.21234 0.74377 0.88338 0.84485 1.90536 1.40688 1.38123 1.63517 1.21246 0.80291 0.84026 0.88668 1.90633 1.49605 1.35246 1.65152 1.45942 1.60763 1.09012 1.17843 1.19511 0.88135 1.01400 0.76698 0.92130 1.21206 1.37948 0.98546 1.02531 0.89211 1.25951 0.95922 1.02185 0.94668 1.70506 1.38615 1.36149 1.05209 0.85167 0.78744 0.77986 0.77519 1.19394 1.20803 1.18511 1.23224 0.83185 0.71561 0.86210 1.92997 1.66919 1.62536 1.96101 1.93385 1.82757 1.95400 1.41301 1.93065 1.86225 1.44705 1.95838 1.24638 0.95212 0.89440 0.99121 1.77157 1.19165 1.22231 0.95129 0.93088 0.87190 0.91124 0.92797 0.87708 0.92572 0.90401 0.86999 0.92277 0.76422 0.74645 0.91985 0.78890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.72 71.98 0.63 -0.81 16 2 C 0.16 1.99 1.23 3.60 0.00 1.99 16 3 C -0.14 -1.73 8.07 71.98 0.58 -1.15 16 4 C -0.16 -1.15 8.28 71.98 0.60 -0.55 16 5 N -0.34 -7.01 3.40 -305.73 -1.04 -8.06 16 6 C 0.15 3.31 10.41 84.44 0.88 4.19 16 7 C -0.34 -9.98 6.12 -20.09 -0.12 -10.10 16 8 C 0.44 14.87 7.20 27.53 0.20 15.06 16 9 O -0.45 -15.21 17.03 -3.44 -0.06 -15.27 16 10 C 0.47 19.29 7.40 87.23 0.65 19.93 16 11 O -0.53 -23.66 12.82 -3.28 -0.04 -23.71 16 12 N -0.68 -29.27 4.98 -447.58 -2.23 -31.49 16 13 C 0.25 12.53 2.21 44.25 0.10 12.63 16 14 H 0.06 3.40 7.58 -2.39 -0.02 3.38 16 15 C -0.57 -28.90 8.46 25.60 0.22 -28.69 16 16 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 17 C 0.02 0.96 5.20 84.65 0.44 1.40 16 18 N -0.87 -47.85 9.50 21.44 0.20 -47.65 16 19 Si 0.98 40.70 29.54 68.60 2.03 42.73 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 C 0.41 21.49 2.81 71.98 0.20 21.69 16 24 F -0.20 -10.16 16.94 44.97 0.76 -9.40 16 25 F -0.15 -8.24 12.91 44.97 0.58 -7.66 16 26 F -0.22 -11.00 15.67 44.97 0.70 -10.30 16 27 C 0.10 3.21 11.13 85.73 0.95 4.16 16 28 N -0.32 -8.82 11.54 -56.14 -0.65 -9.47 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.90 8.03 -2.39 -0.02 0.88 16 35 H 0.08 0.44 7.33 -2.38 -0.02 0.42 16 36 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.22 3.03 7.51 -2.91 -0.02 3.01 16 39 H 0.42 16.24 8.01 -92.71 -0.74 15.50 16 40 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 41 H 0.19 6.51 6.26 -2.91 -0.02 6.50 16 Total: -1.00 -66.13 360.65 5.93 -60.20 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.35 Total: 20.31 kcal Atomic # 6 Polarization: 34.43 SS G_CDS: 5.32 Total: 39.75 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -3.71 Total: -96.66 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.10 Total: -38.97 kcal Atomic # 9 Polarization: -29.40 SS G_CDS: 2.05 Total: -27.35 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -66.13 5.93 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.402 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds