Wall clock time and date at job start Wed Apr 1 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30018 * 127.33577 * 2 1 4 4 O 1.20657 * 112.30224 * 180.30312 * 3 2 1 5 5 C 1.33494 * 113.15495 * 359.71595 * 4 3 2 6 6 C 1.50696 * 126.82835 * 179.97438 * 5 4 3 7 7 F 1.39897 * 109.47402 * 270.02767 * 6 5 4 8 8 F 1.39896 * 109.47151 * 30.03071 * 6 5 4 9 9 F 1.39906 * 109.46987 * 150.03046 * 6 5 4 10 10 C 1.37356 * 106.34383 * 0.02562 * 5 4 3 11 11 C 1.47398 * 128.56958 * 179.97438 * 10 5 4 12 12 O 1.21612 * 120.00175 * 89.99403 * 11 10 5 13 13 N 1.34776 * 120.00136 * 269.99943 * 11 10 5 14 14 C 1.47026 * 125.65202 * 179.97438 * 13 11 10 15 15 C 1.54319 * 107.27208 * 178.90366 * 14 13 11 16 16 H 1.09006 * 110.71995 * 96.35041 * 15 14 13 17 17 C 1.52997 * 110.72218 * 219.44641 * 15 14 13 18 18 C 1.55161 * 103.10429 * 337.90260 * 15 14 13 19 19 H 1.09004 * 111.00245 * 277.33882 * 18 15 14 20 20 N 1.46492 * 111.00581 * 153.48797 * 18 15 14 21 21 C 1.36938 * 120.00078 * 154.99851 * 20 18 15 22 22 H 1.07993 * 119.99988 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99870 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99758 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47265 * 60.00081 * 25 23 21 27 27 H 1.48498 * 109.47161 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47146 * 300.00013 * 25 23 21 29 29 C 1.47428 * 125.64685 * 359.95626 * 13 11 10 30 30 H 1.09003 * 109.46813 * 270.14605 * 1 2 3 31 31 H 1.08999 * 109.46756 * 30.13892 * 1 2 3 32 32 H 1.08996 * 109.46977 * 150.14114 * 1 2 3 33 33 H 1.09001 * 109.87716 * 59.49052 * 14 13 11 34 34 H 1.09000 * 109.88106 * 298.32704 * 14 13 11 35 35 H 1.09002 * 109.47153 * 56.15860 * 17 15 14 36 36 H 1.09001 * 109.46832 * 296.16051 * 17 15 14 37 37 H 1.09004 * 109.47261 * 176.16032 * 17 15 14 38 38 H 0.97004 * 120.00365 * 334.99678 * 20 18 15 39 39 H 0.97006 * 120.00046 * 179.97438 * 24 23 21 40 40 H 1.09003 * 110.36619 * 323.00008 * 29 13 11 41 41 H 1.09004 * 110.37083 * 85.21493 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0059 5 6 3.6494 -0.6007 -0.0049 6 6 4.9712 -1.3246 -0.0115 7 9 5.3727 -1.5502 -1.3325 8 9 5.9325 -0.5459 0.6416 9 9 4.8352 -2.5497 0.6502 10 6 2.3992 -1.1696 0.0023 11 6 2.0401 -2.5991 0.0058 12 8 1.8975 -3.1878 1.0604 13 7 1.8697 -3.2540 -1.1598 14 6 1.5130 -4.6733 -1.3011 15 6 1.4017 -4.9696 -2.8115 16 1 2.3308 -5.3956 -3.1904 17 6 0.2246 -5.9052 -3.0944 18 6 1.1493 -3.5680 -3.4273 19 1 0.0953 -3.2975 -3.3639 20 7 1.6216 -3.5103 -4.8128 21 6 1.0716 -2.6109 -5.6868 22 1 0.2895 -1.9444 -5.3547 23 6 1.5196 -2.5559 -6.9995 24 7 2.4731 -3.3679 -7.4040 25 14 0.7688 -1.3295 -8.1919 26 1 0.9806 0.0493 -7.6826 27 1 1.4159 -1.4715 -9.5209 28 1 -0.6872 -1.5916 -8.3203 29 6 2.0099 -2.6657 -2.5043 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8912 -0.5116 33 1 0.5568 -4.8654 -0.8143 34 1 2.2892 -5.2966 -0.8572 35 1 -0.6911 -5.4672 -2.6973 36 1 0.4034 -6.8686 -2.6169 37 1 0.1231 -6.0462 -4.1705 38 1 2.3239 -4.1092 -5.1112 39 1 2.7859 -3.3298 -8.3215 40 1 1.6320 -1.6433 -2.5123 41 1 3.0528 -2.6864 -2.8207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939222813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:30 Heat of formation + Delta-G solvation = -117.601451 kcal Electronic energy + Delta-G solvation = -32210.925537 eV Core-core repulsion = 27293.456246 eV Total energy + Delta-G solvation = -4917.469291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.61392 -49.14846 -49.08144 -46.45681 -41.30172 -39.09875 -36.09263 -35.90986 -34.51886 -33.80796 -32.50044 -30.06999 -29.26473 -28.62497 -27.45223 -25.99614 -25.30062 -23.12807 -22.52351 -21.51020 -21.11902 -20.16576 -19.79738 -19.72719 -19.16142 -19.05309 -18.51255 -17.58064 -17.48851 -16.67229 -16.15876 -15.94234 -15.88928 -15.63451 -15.48392 -15.36650 -15.19837 -15.18735 -14.86790 -14.64783 -14.53243 -14.42430 -14.39014 -14.27761 -13.97292 -13.57600 -13.32762 -13.07336 -12.90569 -12.82996 -12.75210 -12.27027 -12.23256 -12.01603 -11.74144 -11.65313 -11.42913 -11.39179 -11.30422 -10.93534 -9.91201 -9.05739 -7.94240 -5.23873 -0.64073 0.35581 0.43003 0.93042 1.49297 1.51352 1.51973 1.57474 1.72309 2.13325 2.54117 2.62207 2.80038 2.82122 2.97936 3.27486 3.36452 3.44979 3.67716 3.76289 3.89350 4.13580 4.17206 4.28903 4.42572 4.50451 4.53738 4.56871 4.66944 4.83029 4.85868 4.95897 4.99327 5.09665 5.15193 5.34908 5.48252 5.55286 6.13286 6.26369 6.56099 6.66724 7.34775 8.05449 8.29108 9.28122 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003993 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.854688 B = 7010.157338 C = 7613.838180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 N -0.336 5.336 4 O 0.136 5.864 5 C -0.096 4.096 6 C 0.568 3.432 7 F -0.155 7.155 8 F -0.151 7.151 9 F -0.153 7.153 10 C -0.172 4.172 11 C 0.604 3.396 12 O -0.542 6.542 13 N -0.593 5.593 14 C 0.118 3.882 15 C -0.105 4.105 16 H 0.079 0.921 17 C -0.128 4.128 18 C 0.176 3.824 19 H 0.075 0.925 20 N -0.717 5.717 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.065 4.065 24 N -0.964 5.964 25 Si 0.964 3.036 26 H -0.281 1.281 27 H -0.300 1.300 28 H -0.276 1.276 29 C 0.079 3.921 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.068 0.932 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 2.414 16.685 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 N -0.038 5.038 4 O 0.068 5.932 5 C -0.162 4.162 6 C 0.512 3.488 7 F -0.136 7.136 8 F -0.132 7.132 9 F -0.134 7.134 10 C -0.179 4.179 11 C 0.389 3.611 12 O -0.420 6.420 13 N -0.325 5.325 14 C -0.003 4.003 15 C -0.124 4.124 16 H 0.098 0.902 17 C -0.186 4.186 18 C 0.065 3.935 19 H 0.093 0.907 20 N -0.355 5.355 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.258 4.258 24 N -0.614 5.614 25 Si 0.794 3.206 26 H -0.207 1.207 27 H -0.226 1.226 28 H -0.202 1.202 29 C -0.047 4.047 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.210 0.790 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.579 3.549 17.193 17.627 hybrid contribution 0.594 -0.263 -1.107 1.283 sum -0.985 3.286 16.087 16.448 Atomic orbital electron populations 1.20541 0.81635 1.05893 1.05833 1.25379 1.00433 0.84330 0.99395 1.73627 0.88754 1.23083 1.18333 1.84644 1.22015 1.19484 1.67008 1.24229 0.95216 0.86923 1.09829 1.16426 0.80579 0.76759 0.75046 1.93349 1.90929 1.94583 1.34752 1.93297 1.64828 1.74131 1.80933 1.93331 1.95606 1.43749 1.80697 1.22218 0.92173 0.96516 1.07008 1.16414 0.77982 0.83579 0.83076 1.90836 1.52371 1.67926 1.30908 1.48391 1.66297 1.12520 1.05268 1.22202 1.01933 0.79530 0.96636 1.22456 1.00896 0.96333 0.92760 0.90216 1.21615 0.96400 0.98888 1.01653 1.21527 0.96147 0.92671 0.83200 0.90730 1.42375 1.44705 1.42938 1.05492 1.19548 1.14926 1.11790 0.91179 0.90242 1.25448 0.99765 1.01409 0.99170 1.69784 1.32469 1.41958 1.17166 0.85362 0.77997 0.79107 0.78183 1.20693 1.22618 1.20246 1.23392 1.01510 0.98968 0.80795 0.87165 0.87676 0.88894 0.89304 0.90461 0.91690 0.90690 0.93375 0.79000 0.94015 0.91391 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.49 71.24 0.75 -0.62 16 2 C 0.07 1.58 7.59 45.16 0.34 1.93 16 3 N -0.34 -8.65 12.01 -44.77 -0.54 -9.19 16 4 O 0.14 3.50 11.06 76.98 0.85 4.35 16 5 C -0.10 -2.53 6.85 25.48 0.17 -2.36 16 6 C 0.57 14.18 3.52 71.23 0.25 14.43 16 7 F -0.16 -4.14 17.30 44.97 0.78 -3.36 16 8 F -0.15 -3.39 17.30 44.97 0.78 -2.62 16 9 F -0.15 -4.08 16.09 44.97 0.72 -3.35 16 10 C -0.17 -4.70 5.08 -18.75 -0.10 -4.79 16 11 C 0.60 17.83 6.62 86.66 0.57 18.41 16 12 O -0.54 -18.33 17.43 -4.07 -0.07 -18.40 16 13 N -0.59 -16.70 3.33 -815.22 -2.71 -19.41 16 14 C 0.12 2.93 6.47 86.73 0.56 3.49 16 15 C -0.10 -2.82 3.19 -9.61 -0.03 -2.85 16 16 H 0.08 2.29 8.00 -2.38 -0.02 2.28 16 17 C -0.13 -3.02 9.14 71.98 0.66 -2.36 16 18 C 0.18 5.86 3.17 46.47 0.15 6.01 16 19 H 0.07 2.46 8.00 -2.38 -0.02 2.44 16 20 N -0.72 -31.71 5.25 -316.01 -1.66 -33.37 16 21 C -0.24 -12.13 9.96 84.03 0.84 -11.29 16 22 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.96 -55.41 13.06 21.65 0.28 -55.13 16 25 Si 0.96 43.40 29.55 68.60 2.03 45.43 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 29 C 0.08 2.49 6.39 86.93 0.56 3.04 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.96 7.80 -2.39 -0.02 1.94 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.38 18.26 7.76 -92.71 -0.72 17.54 16 39 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 40 H 0.07 2.13 7.69 -2.39 -0.02 2.11 16 41 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -61.14 368.17 6.03 -55.12 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.38 Total: 19.89 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.19 Total: 20.04 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.63 Total: -117.10 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.78 Total: -14.05 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 2.28 Total: -9.33 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.14 6.03 -55.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939222813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.482 kcal (2) G-P(sol) polarization free energy of solvation -61.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds