Wall clock time and date at job start Wed Apr 1 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 110.91372 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90403 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.36941 * 125.65218 * 155.79798 * 5 4 2 7 7 H 1.08004 * 119.99539 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00624 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99751 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00379 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47056 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47158 * 119.99924 * 10 8 6 13 13 H 1.48494 * 109.47163 * 239.99871 * 10 8 6 14 14 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 15 15 C 1.54321 * 107.26791 * 1.06162 * 14 5 4 16 16 H 1.08998 * 110.71927 * 140.55469 * 15 14 5 17 17 N 1.46499 * 110.72384 * 263.65067 * 15 14 5 18 18 C 1.34775 * 120.00025 * 273.55367 * 17 15 14 19 19 O 1.21684 * 120.00030 * 359.97438 * 18 17 15 20 20 C 1.46724 * 120.00104 * 179.97438 * 18 17 15 21 21 O 1.35346 * 126.64238 * 359.68225 * 20 18 17 22 22 C 1.33661 * 107.68429 * 179.87082 * 21 20 18 23 23 N 1.30626 * 109.15338 * 0.40098 * 22 21 20 24 24 C 1.33688 * 108.99345 * 359.74668 * 23 22 21 25 25 C 1.50705 * 126.27084 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47146 * 269.97860 * 25 24 23 27 27 F 1.39899 * 109.46938 * 29.98145 * 25 24 23 28 28 F 1.39904 * 109.46947 * 149.97695 * 25 24 23 29 29 H 1.09000 * 109.47194 * 297.54657 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55102 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54830 * 1 2 3 32 32 H 1.08997 * 109.46961 * 182.44877 * 3 2 1 33 33 H 1.09003 * 109.46792 * 302.45175 * 3 2 1 34 34 H 1.08997 * 109.46833 * 62.45143 * 3 2 1 35 35 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 36 36 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 37 37 H 0.96995 * 120.00037 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.88266 * 120.47537 * 14 5 4 39 39 H 1.08997 * 109.88244 * 241.48894 * 14 5 4 40 40 H 0.97004 * 119.99991 * 93.54445 * 17 15 14 41 41 H 1.08002 * 125.42416 * 180.14402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 3.4280 -1.2429 0.7759 6 6 4.4642 -1.5641 1.6117 7 1 4.3320 -1.5071 2.6821 8 6 5.6842 -1.9630 1.0833 9 7 5.8451 -2.0330 -0.2212 10 14 7.0977 -2.4005 2.2234 11 1 6.6628 -2.2417 3.6344 12 1 7.5065 -3.8084 1.9874 13 1 8.2472 -1.4997 1.9549 14 6 3.4707 -1.2757 -0.6934 15 6 2.0901 -0.8107 -1.2023 16 1 2.1972 -0.1737 -2.0803 17 7 1.2331 -1.9609 -1.5003 18 6 1.2909 -2.5483 -2.7119 19 8 2.0546 -2.1231 -3.5585 20 6 0.4330 -3.7006 -3.0103 21 8 -0.4554 -4.2846 -2.1727 22 6 -1.0302 -5.2958 -2.8312 23 7 -0.5274 -5.3642 -4.0349 24 6 0.3806 -4.3942 -4.1829 25 6 1.1963 -4.1177 -5.4196 26 9 2.3897 -4.8454 -5.3634 27 9 0.4698 -4.4999 -6.5524 28 9 1.4863 -2.7509 -5.4909 29 1 -0.3633 0.4753 0.9112 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 3.1649 1.4021 -0.0439 33 1 1.6907 1.9655 -0.8672 34 1 1.7619 1.9383 0.9111 35 1 1.4520 -1.6704 1.4023 36 1 2.1542 -0.1726 2.0841 37 1 6.6977 -2.3114 -0.5905 38 1 4.2461 -0.6014 -1.0569 39 1 3.6720 -2.2907 -1.0359 40 1 0.6241 -2.2997 -0.8256 41 1 -1.7866 -5.9543 -2.4304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974880385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:25 Heat of formation + Delta-G solvation = -120.415355 kcal Electronic energy + Delta-G solvation = -32265.505403 eV Core-core repulsion = 27347.914092 eV Total energy + Delta-G solvation = -4917.591311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.02623 -47.58568 -47.45152 -43.98433 -39.94877 -38.08634 -35.71062 -34.03433 -33.20593 -31.51640 -30.76004 -28.41438 -27.20503 -26.52081 -25.69920 -24.41957 -23.41110 -22.36543 -21.07768 -20.12419 -19.48498 -18.68315 -18.49758 -18.18210 -17.71240 -17.20699 -16.76131 -16.18735 -16.04546 -14.97248 -14.75444 -14.64388 -14.42624 -14.23308 -14.14818 -13.98344 -13.90236 -13.86353 -13.61202 -13.52386 -13.32171 -12.62603 -12.46117 -12.18584 -12.10038 -12.09575 -11.76497 -11.51089 -11.36237 -11.18103 -11.06655 -10.82934 -10.51080 -10.35458 -10.12025 -10.09626 -9.93750 -9.71390 -9.69739 -8.76866 -8.64346 -6.88514 -5.73669 -3.08851 0.27678 1.80285 1.87077 2.46224 2.91971 3.09214 3.38147 3.39683 3.43239 3.46418 3.73382 4.23753 4.38697 4.46517 4.61167 4.77739 4.85140 4.95152 5.16721 5.18942 5.44220 5.48714 5.53054 5.68349 5.81548 5.91800 6.06057 6.07500 6.12272 6.28145 6.38836 6.49409 6.54805 6.58329 6.81774 6.87081 7.38790 7.52576 7.58135 7.78855 8.08092 8.21057 9.17230 9.77938 10.42204 11.37336 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003779 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.968087 B = 7407.821500 C = 8379.445706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.143 3.857 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.175 3.825 15 C 0.121 3.879 16 H 0.095 0.905 17 N -0.686 5.686 18 C 0.588 3.412 19 O -0.484 6.484 20 C -0.012 4.012 21 O -0.175 6.175 22 C 0.208 3.792 23 N -0.459 5.459 24 C -0.040 4.040 25 C 0.552 3.448 26 F -0.165 7.165 27 F -0.170 7.170 28 F -0.138 7.138 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.043 0.957 37 H 0.253 0.747 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.401 0.599 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 -1.840 -4.839 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.049 3.951 15 C 0.017 3.983 16 H 0.113 0.887 17 N -0.337 5.337 18 C 0.369 3.631 19 O -0.359 6.359 20 C -0.071 4.071 21 O -0.060 6.060 22 C -0.018 4.018 23 N -0.186 5.186 24 C -0.165 4.165 25 C 0.497 3.503 26 F -0.146 7.146 27 F -0.151 7.151 28 F -0.119 7.119 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.238 0.762 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -16.498 -2.010 -5.874 17.628 hybrid contribution 0.624 -0.344 1.285 1.469 sum -15.874 -2.354 -4.589 16.691 Atomic orbital electron populations 1.21700 0.94638 1.01035 1.01700 1.22076 0.94483 0.96181 0.96224 1.21594 1.02523 0.93411 1.00767 1.21637 0.87780 0.94583 0.94345 1.44435 1.07656 1.79099 1.01714 1.19059 0.89329 1.38669 0.88898 0.90360 1.24813 0.97846 1.01615 0.95976 1.69947 1.24209 1.53140 1.09227 0.86068 0.82488 0.77768 0.79550 1.20544 1.21806 1.21699 1.21548 0.89229 1.00741 0.83567 1.22742 0.92385 0.85440 0.97734 0.88741 1.45963 1.42117 1.32607 1.13022 1.16324 0.82007 0.80689 0.84041 1.91046 1.36846 1.61701 1.46270 1.23484 0.95322 0.98788 0.89456 1.84613 1.42126 1.38050 1.41204 1.28454 0.98035 0.89334 0.86007 1.70153 1.09220 1.20465 1.18719 1.21682 1.01596 0.97420 0.95765 1.16714 0.77219 0.75870 0.80514 1.93260 1.47349 1.77676 1.96300 1.93214 1.77531 1.91235 1.53134 1.93409 1.93289 1.29157 1.96040 0.92318 0.92667 0.93189 0.91123 0.93239 0.92630 0.96729 0.93883 0.93606 0.92336 0.93197 0.76240 0.71687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.36 37.16 0.31 -1.24 16 2 C -0.09 -1.35 0.84 -152.20 -0.13 -1.48 16 3 C -0.13 -1.85 8.61 37.16 0.32 -1.53 16 4 C 0.14 2.67 6.14 -2.53 -0.02 2.65 16 5 N -0.60 -14.45 3.38 -170.08 -0.58 -15.02 16 6 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 7 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 10 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 C 0.17 4.10 4.73 -3.06 -0.01 4.08 16 15 C 0.12 2.15 2.51 -65.94 -0.17 1.98 16 16 H 0.09 1.70 7.60 -51.93 -0.39 1.31 16 17 N -0.69 -10.79 4.56 -53.17 -0.24 -11.03 16 18 C 0.59 9.85 7.73 -12.83 -0.10 9.75 16 19 O -0.48 -9.56 12.86 5.20 0.07 -9.49 16 20 C -0.01 -0.17 7.14 -36.84 -0.26 -0.43 16 21 O -0.18 -1.89 10.57 4.42 0.05 -1.84 16 22 C 0.21 1.73 13.21 52.25 0.69 2.42 16 23 N -0.46 -5.66 11.21 -10.88 -0.12 -5.78 16 24 C -0.04 -0.58 6.49 -82.47 -0.54 -1.12 16 25 C 0.55 8.60 3.34 36.01 0.12 8.72 16 26 F -0.16 -2.74 17.30 2.25 0.04 -2.70 16 27 F -0.17 -2.46 17.27 2.25 0.04 -2.42 16 28 F -0.14 -2.33 13.47 2.25 0.03 -2.30 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 6.19 -51.93 -0.32 0.22 16 32 H 0.07 1.25 7.82 -51.93 -0.41 0.84 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.27 8.04 -51.93 -0.42 -0.15 16 36 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 38 H 0.06 1.56 7.38 -51.93 -0.38 1.18 16 39 H 0.05 1.36 7.40 -51.93 -0.38 0.98 16 40 H 0.40 5.45 6.64 -40.82 -0.27 5.18 16 41 H 0.27 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -32.93 352.57 -4.54 -37.48 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.66 Total: 0.05 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: -0.03 Total: 17.18 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.37 Total: -58.17 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.11 Total: -11.33 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.93 -4.54 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974880385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.939 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds