Wall clock time and date at job start Wed Apr 1 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 110.91372 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90403 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.36941 * 125.65218 * 155.79798 * 5 4 2 7 7 H 1.08004 * 119.99539 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00624 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99751 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00379 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47056 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47158 * 119.99924 * 10 8 6 13 13 H 1.48494 * 109.47163 * 239.99871 * 10 8 6 14 14 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 15 15 C 1.54321 * 107.26791 * 1.06162 * 14 5 4 16 16 H 1.08998 * 110.71927 * 140.55469 * 15 14 5 17 17 N 1.46499 * 110.72384 * 263.65067 * 15 14 5 18 18 C 1.34775 * 120.00025 * 273.55367 * 17 15 14 19 19 O 1.21684 * 120.00030 * 359.97438 * 18 17 15 20 20 C 1.46724 * 120.00104 * 179.97438 * 18 17 15 21 21 O 1.35346 * 126.64238 * 359.68225 * 20 18 17 22 22 C 1.33661 * 107.68429 * 179.87082 * 21 20 18 23 23 N 1.30626 * 109.15338 * 0.40098 * 22 21 20 24 24 C 1.33688 * 108.99345 * 359.74668 * 23 22 21 25 25 C 1.50705 * 126.27084 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47146 * 269.97860 * 25 24 23 27 27 F 1.39899 * 109.46938 * 29.98145 * 25 24 23 28 28 F 1.39904 * 109.46947 * 149.97695 * 25 24 23 29 29 H 1.09000 * 109.47194 * 297.54657 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55102 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54830 * 1 2 3 32 32 H 1.08997 * 109.46961 * 182.44877 * 3 2 1 33 33 H 1.09003 * 109.46792 * 302.45175 * 3 2 1 34 34 H 1.08997 * 109.46833 * 62.45143 * 3 2 1 35 35 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 36 36 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 37 37 H 0.96995 * 120.00037 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.88266 * 120.47537 * 14 5 4 39 39 H 1.08997 * 109.88244 * 241.48894 * 14 5 4 40 40 H 0.97004 * 119.99991 * 93.54445 * 17 15 14 41 41 H 1.08002 * 125.42416 * 180.14402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 3.4280 -1.2429 0.7759 6 6 4.4642 -1.5641 1.6117 7 1 4.3320 -1.5071 2.6821 8 6 5.6842 -1.9630 1.0833 9 7 5.8451 -2.0330 -0.2212 10 14 7.0977 -2.4005 2.2234 11 1 6.6628 -2.2417 3.6344 12 1 7.5065 -3.8084 1.9874 13 1 8.2472 -1.4997 1.9549 14 6 3.4707 -1.2757 -0.6934 15 6 2.0901 -0.8107 -1.2023 16 1 2.1972 -0.1737 -2.0803 17 7 1.2331 -1.9609 -1.5003 18 6 1.2909 -2.5483 -2.7119 19 8 2.0546 -2.1231 -3.5585 20 6 0.4330 -3.7006 -3.0103 21 8 -0.4554 -4.2846 -2.1727 22 6 -1.0302 -5.2958 -2.8312 23 7 -0.5274 -5.3642 -4.0349 24 6 0.3806 -4.3942 -4.1829 25 6 1.1963 -4.1177 -5.4196 26 9 2.3897 -4.8454 -5.3634 27 9 0.4698 -4.4999 -6.5524 28 9 1.4863 -2.7509 -5.4909 29 1 -0.3633 0.4753 0.9112 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 3.1649 1.4021 -0.0439 33 1 1.6907 1.9655 -0.8672 34 1 1.7619 1.9383 0.9111 35 1 1.4520 -1.6704 1.4023 36 1 2.1542 -0.1726 2.0841 37 1 6.6977 -2.3114 -0.5905 38 1 4.2461 -0.6014 -1.0569 39 1 3.6720 -2.2907 -1.0359 40 1 0.6241 -2.2997 -0.8256 41 1 -1.7866 -5.9543 -2.4304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974880385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:24 Heat of formation + Delta-G solvation = -145.769817 kcal Electronic energy + Delta-G solvation = -32266.604855 eV Core-core repulsion = 27347.914092 eV Total energy + Delta-G solvation = -4918.690763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.27046 -48.82681 -48.71998 -44.90219 -41.34319 -39.53452 -36.66765 -35.74199 -34.64830 -32.62735 -32.53743 -29.98616 -28.34516 -27.79554 -27.36723 -25.65261 -24.71968 -23.52046 -22.45712 -21.73079 -20.71623 -19.88114 -19.72551 -19.40817 -18.89925 -18.69504 -18.16990 -17.48807 -17.05508 -16.71442 -16.00935 -15.95792 -15.75464 -15.63347 -15.54956 -15.35698 -15.24821 -15.14958 -14.89466 -14.81011 -14.72183 -14.04425 -13.79869 -13.62529 -13.45681 -13.17199 -13.03831 -12.98495 -12.88468 -12.73626 -12.57220 -12.31204 -12.08750 -11.87443 -11.78158 -11.55303 -11.47810 -11.32443 -10.76254 -10.73181 -10.17641 -8.89154 -7.84180 -5.20249 -0.76829 0.84503 0.97430 1.37051 1.44615 1.45109 1.55538 1.65311 1.92128 2.32616 2.48896 2.64711 3.14975 3.28809 3.35450 3.45338 3.51937 3.69734 3.75092 3.93712 4.01262 4.05454 4.36973 4.48664 4.64656 4.79436 4.82448 4.89587 4.94993 5.00155 5.10788 5.17542 5.22922 5.36232 5.46600 5.56225 5.62362 5.72614 5.96310 6.17791 6.25458 6.82567 7.08732 7.77996 8.41370 9.25417 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003779 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.968087 B = 7407.821500 C = 8379.445706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.621 5.621 6 C -0.233 4.233 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.954 5.954 10 Si 0.974 3.026 11 H -0.260 1.260 12 H -0.298 1.298 13 H -0.296 1.296 14 C 0.191 3.809 15 C 0.135 3.865 16 H 0.090 0.910 17 N -0.676 5.676 18 C 0.587 3.413 19 O -0.524 6.524 20 C -0.031 4.031 21 O -0.166 6.166 22 C 0.254 3.746 23 N -0.492 5.492 24 C -0.041 4.041 25 C 0.546 3.454 26 F -0.176 7.176 27 F -0.164 7.164 28 F -0.149 7.149 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.243 0.757 38 H 0.011 0.989 39 H 0.002 0.998 40 H 0.414 0.586 41 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.812 -2.286 -2.895 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.012 3.988 5 N -0.347 5.347 6 C -0.362 4.362 7 H 0.106 0.894 8 C -0.261 4.261 9 N -0.603 5.603 10 Si 0.803 3.197 11 H -0.184 1.184 12 H -0.225 1.225 13 H -0.223 1.223 14 C 0.065 3.935 15 C 0.030 3.970 16 H 0.108 0.892 17 N -0.328 5.328 18 C 0.370 3.630 19 O -0.402 6.402 20 C -0.090 4.090 21 O -0.052 6.052 22 C 0.029 3.971 23 N -0.218 5.218 24 C -0.165 4.165 25 C 0.491 3.509 26 F -0.158 7.158 27 F -0.146 7.146 28 F -0.130 7.130 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.020 0.980 40 H 0.253 0.747 41 H 0.346 0.654 Dipole moment (debyes) X Y Z Total from point charges -20.237 -2.458 -3.891 20.754 hybrid contribution 1.659 -0.287 0.701 1.824 sum -18.578 -2.745 -3.189 19.049 Atomic orbital electron populations 1.21679 0.90642 1.02460 1.03554 1.22052 0.97372 0.95320 0.92622 1.21594 0.99975 0.93603 1.02939 1.21916 0.85380 0.95573 0.95935 1.44687 1.09324 1.78965 1.01708 1.19502 0.90119 1.36819 0.89789 0.89410 1.25635 1.00561 1.02734 0.97196 1.70215 1.24005 1.54984 1.11118 0.85062 0.79251 0.76614 0.78758 1.18404 1.22531 1.22289 1.21102 0.91723 0.96903 0.83769 1.22341 0.90022 0.86176 0.98475 0.89235 1.45733 1.41701 1.32074 1.13249 1.16590 0.81703 0.81026 0.83672 1.91023 1.38599 1.63124 1.47445 1.22705 0.97064 0.99141 0.90082 1.84632 1.41485 1.38547 1.40513 1.29983 0.95830 0.87114 0.84192 1.70201 1.09953 1.20609 1.21025 1.21546 1.01810 0.98135 0.95051 1.16927 0.77194 0.75293 0.81512 1.93229 1.48251 1.77862 1.96426 1.93215 1.77234 1.91109 1.53016 1.93383 1.93428 1.30062 1.96177 0.90093 0.91247 0.91995 0.95108 0.91075 0.90436 0.95064 0.93135 0.94768 0.97091 0.98030 0.74668 0.65370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.36 71.98 0.60 -1.79 16 2 C -0.07 -2.08 0.84 -50.69 -0.04 -2.12 16 3 C -0.12 -3.46 8.61 71.98 0.62 -2.84 16 4 C 0.14 4.88 6.14 86.85 0.53 5.41 16 5 N -0.62 -30.35 3.38 -692.01 -2.34 -32.70 16 6 C -0.23 -12.73 10.28 84.03 0.86 -11.87 16 7 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 9 N -0.95 -59.28 10.31 21.65 0.22 -59.06 16 10 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 14 C 0.19 9.51 4.73 86.73 0.41 9.92 16 15 C 0.14 4.86 2.51 46.28 0.12 4.97 16 16 H 0.09 3.34 7.60 -2.39 -0.02 3.32 16 17 N -0.68 -20.92 4.56 -440.36 -2.01 -22.93 16 18 C 0.59 19.93 7.73 86.46 0.67 20.60 16 19 O -0.52 -21.81 12.86 -4.30 -0.06 -21.86 16 20 C -0.03 -0.84 7.14 24.05 0.17 -0.67 16 21 O -0.17 -3.02 10.57 -7.08 -0.07 -3.10 16 22 C 0.25 3.06 13.21 130.42 1.72 4.78 16 23 N -0.49 -10.88 11.21 -303.12 -3.40 -14.28 16 24 C -0.04 -1.17 6.49 41.83 0.27 -0.90 16 25 C 0.55 17.43 3.34 71.24 0.24 17.67 16 26 F -0.18 -6.12 17.30 44.97 0.78 -5.34 16 27 F -0.16 -4.80 17.27 44.97 0.78 -4.02 16 28 F -0.15 -5.29 13.47 44.97 0.61 -4.68 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.05 6.19 -2.39 -0.01 1.03 16 32 H 0.03 1.10 7.82 -2.39 -0.02 1.08 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.03 1.04 8.04 -2.39 -0.02 1.03 16 36 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 37 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 39 H 0.00 0.09 7.40 -2.39 -0.02 0.07 16 40 H 0.41 10.38 6.64 -92.71 -0.62 9.76 16 41 H 0.33 -1.05 8.06 -2.91 -0.02 -1.08 16 Total: -1.00 -79.29 352.57 3.66 -75.63 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.48 Total: 4.39 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 6.64 Total: 39.70 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -7.52 Total: -128.96 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.13 Total: -24.96 kcal Atomic # 9 Polarization: -16.21 SS G_CDS: 2.16 Total: -14.05 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -79.29 3.66 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974880385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.137 kcal (2) G-P(sol) polarization free energy of solvation -79.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds