Wall clock time and date at job start Wed Apr 1 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47456 * 270.00263 * 3 2 1 5 5 H 1.48503 * 109.47148 * 30.00330 * 3 2 1 6 6 H 1.48507 * 109.47257 * 149.99783 * 3 2 1 7 7 C 1.38816 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00521 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00072 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.46976 * 35.00205 * 10 9 7 12 12 C 1.52995 * 109.46976 * 274.99608 * 10 9 7 13 13 C 1.53000 * 109.47146 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46657 * 60.00356 * 13 12 10 15 15 C 1.52995 * 109.47051 * 299.99701 * 14 13 12 16 16 H 1.08999 * 109.47559 * 299.99918 * 15 14 13 17 17 N 1.46506 * 109.46824 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99873 * 85.00531 * 17 15 14 19 19 O 1.21588 * 120.00208 * 359.97438 * 18 17 15 20 20 C 1.47506 * 120.00014 * 179.97438 * 18 17 15 21 21 C 1.36824 * 126.94627 * 179.97438 * 20 18 17 22 22 C 1.41262 * 103.84906 * 180.02562 * 21 20 18 23 23 C 1.50706 * 126.70332 * 180.02562 * 22 21 20 24 24 F 1.39905 * 109.46815 * 90.00336 * 23 22 21 25 25 F 1.39899 * 109.46947 * 209.99663 * 23 22 21 26 26 F 1.39898 * 109.47403 * 330.00390 * 23 22 21 27 27 N 1.30127 * 106.58782 * 359.97438 * 22 21 20 28 28 O 1.20882 * 111.98676 * 359.70231 * 27 22 21 29 29 C 1.53000 * 109.47146 * 60.00598 * 15 14 13 30 30 H 0.96997 * 119.99928 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00029 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47559 * 300.00406 * 12 10 9 33 33 H 1.09002 * 109.46959 * 60.00233 * 12 10 9 34 34 H 1.09002 * 109.47150 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47446 * 300.00748 * 13 12 10 36 36 H 1.09003 * 109.46645 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47370 * 60.00042 * 14 13 12 38 38 H 0.96995 * 120.00050 * 264.72646 * 17 15 14 39 39 H 1.08005 * 128.07607 * 0.02562 * 21 20 18 40 40 H 1.08999 * 109.47446 * 59.99252 * 29 15 14 41 41 H 1.08994 * 109.47563 * 179.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9683 -3.5508 0.5886 12 6 2.4230 -4.0350 -1.4385 13 6 3.1885 -5.3597 -1.4385 14 6 2.3113 -6.4556 -0.8298 15 6 1.9464 -6.0774 0.6071 16 1 2.8567 -5.9711 1.1972 17 7 1.1069 -7.1271 1.1901 18 6 1.6771 -8.2089 1.7567 19 8 2.8881 -8.3140 1.7837 20 6 0.8319 -9.2655 2.3442 21 6 1.2566 -10.4161 2.9508 22 6 0.0581 -11.0625 3.3264 23 6 -0.0671 -12.3847 4.0388 24 9 -0.0781 -12.1702 5.4212 25 9 -1.2579 -13.0104 3.6546 26 9 1.0183 -13.2005 3.7020 27 7 -0.9166 -10.2929 2.9380 28 8 -0.5133 -9.2897 2.3974 29 6 1.1809 -4.7527 0.6071 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 1.5128 -4.1409 -2.0287 33 1 3.0483 -3.2545 -1.8720 34 1 3.4481 -5.6294 -2.4622 35 1 4.0988 -5.2534 -0.8484 36 1 2.8565 -7.3995 -0.8302 37 1 1.4010 -6.5620 -1.4198 38 1 0.1409 -7.0415 1.1719 39 1 2.2714 -10.7517 3.1061 40 1 0.2706 -4.8591 0.0170 41 1 0.9205 -4.4835 1.6307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981153024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:59 Heat of formation + Delta-G solvation = -119.435925 kcal Electronic energy + Delta-G solvation = -29794.481163 eV Core-core repulsion = 24876.932323 eV Total energy + Delta-G solvation = -4917.548840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.79921 -48.32707 -48.28569 -45.96778 -40.29459 -38.16262 -35.46518 -34.84335 -33.59798 -32.76270 -31.19793 -29.56799 -27.89367 -27.87588 -24.96290 -23.84928 -23.66794 -22.16638 -21.69028 -20.76505 -20.09102 -19.33535 -19.21188 -18.89546 -18.43010 -17.73534 -17.15157 -16.58377 -16.47561 -15.31891 -15.17477 -15.15701 -15.04012 -14.70069 -14.55120 -14.45416 -14.41584 -14.37690 -14.17453 -13.90649 -13.63289 -13.25152 -13.16138 -12.82455 -12.63998 -12.26976 -12.18970 -11.61508 -11.13671 -11.05101 -10.91992 -10.84984 -10.80124 -10.53377 -10.46662 -10.31100 -10.21923 -9.86460 -9.70644 -9.30003 -8.92068 -7.01330 -5.81036 -3.10036 0.07575 0.86018 1.57786 1.91622 2.51240 2.64392 2.74592 3.15394 3.41015 3.46664 3.47923 3.65286 3.89215 3.98330 4.28971 4.39316 4.53095 4.83647 4.93168 4.98355 5.18173 5.40644 5.49256 5.54956 5.61022 5.75859 5.85101 5.90543 6.02033 6.07741 6.21716 6.31342 6.43800 6.50227 6.63836 6.88229 6.89079 7.05282 7.16556 7.61182 7.66904 8.37505 9.48883 10.05308 10.39756 11.41544 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.001876 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.553801 B =14919.473047 C =15508.323842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.126 4.126 15 C 0.147 3.853 16 H 0.095 0.905 17 N -0.702 5.702 18 C 0.603 3.397 19 O -0.503 6.503 20 C -0.064 4.064 21 C -0.113 4.113 22 C -0.089 4.089 23 C 0.561 3.439 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.159 7.159 27 N -0.288 5.288 28 O 0.157 5.843 29 C -0.131 4.131 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.408 0.592 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -25.577 4.907 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.068 0.932 12 C -0.179 4.179 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.113 0.887 17 N -0.351 5.351 18 C 0.385 3.615 19 O -0.378 6.378 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.246 4.246 23 C 0.506 3.494 24 F -0.143 7.143 25 F -0.143 7.143 26 F -0.140 7.140 27 N 0.022 4.978 28 O 0.070 5.930 29 C -0.170 4.170 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.216 0.784 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.192 -25.669 5.086 26.169 hybrid contribution 0.288 0.593 0.110 0.668 sum 0.480 -25.076 5.196 25.614 Atomic orbital electron populations 1.69654 1.05106 1.25699 1.57663 1.24744 0.95521 0.97716 1.02975 0.86204 0.78685 0.83863 0.77524 1.21728 1.21802 1.20735 1.19230 0.91014 0.84010 1.42706 0.91115 1.42395 1.05763 0.99666 1.88615 1.20086 0.94077 0.85491 0.93000 0.93248 1.22314 0.99809 0.95253 1.00500 1.21486 0.98469 0.95249 1.00102 1.21908 1.00468 0.99069 0.94970 1.21250 0.94396 0.85639 0.94341 0.88745 1.46130 1.11455 1.20180 1.57357 1.16400 0.86087 0.80449 0.78560 1.90921 1.11844 1.77042 1.58039 1.24546 0.83015 0.99853 1.05530 1.22698 1.00567 0.92385 0.97953 1.23437 0.92160 0.99844 1.09206 1.16568 0.74529 0.81670 0.76655 1.93288 1.96128 1.94751 1.30139 1.93274 1.46590 1.83631 1.90837 1.93267 1.54744 1.73881 1.92155 1.73836 1.22594 0.94455 1.06878 1.85056 1.21066 1.31603 1.55243 1.22128 0.99506 0.92952 1.02425 0.93501 0.78290 0.92553 0.91769 0.92305 0.92035 0.91977 0.91691 0.75672 0.78356 0.91351 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -16.97 5.12 -53.43 -0.27 -17.25 16 10 C 0.18 3.29 2.77 -67.93 -0.19 3.10 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.14 -2.23 5.50 -26.73 -0.15 -2.38 16 13 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 14 C -0.13 -1.43 5.49 -26.73 -0.15 -1.58 16 15 C 0.15 1.72 2.45 -67.93 -0.17 1.55 16 16 H 0.09 1.23 7.57 -51.93 -0.39 0.83 16 17 N -0.70 -6.70 5.08 -54.86 -0.28 -6.98 16 18 C 0.60 6.23 7.78 -12.48 -0.10 6.13 16 19 O -0.50 -6.64 16.58 5.29 0.09 -6.55 16 20 C -0.06 -0.56 7.29 -36.32 -0.26 -0.82 16 21 C -0.11 -0.90 10.65 -38.95 -0.41 -1.32 16 22 C -0.09 -0.78 6.63 -82.16 -0.54 -1.33 16 23 C 0.56 4.60 3.56 36.01 0.13 4.72 16 24 F -0.16 -1.38 17.30 2.25 0.04 -1.34 16 25 F -0.16 -1.46 17.27 2.25 0.04 -1.42 16 26 F -0.16 -1.20 17.08 2.25 0.04 -1.17 16 27 N -0.29 -2.80 12.00 33.52 0.40 -2.40 16 28 O 0.16 1.37 11.04 15.53 0.17 1.54 16 29 C -0.13 -1.82 4.86 -26.73 -0.13 -1.95 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.38 9.56 7.80 -40.82 -0.32 9.25 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.41 3.04 8.43 -40.82 -0.34 2.70 16 39 H 0.20 1.20 8.06 -52.48 -0.42 0.77 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -30.12 364.95 -5.78 -35.89 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.83 Total: 6.41 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.38 Total: -2.44 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.57 Total: -53.27 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.26 Total: -5.02 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.12 Total: -3.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.12 -5.78 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.545 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds