Wall clock time and date at job start Wed Apr 1 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47456 * 270.00263 * 3 2 1 5 5 H 1.48503 * 109.47148 * 30.00330 * 3 2 1 6 6 H 1.48507 * 109.47257 * 149.99783 * 3 2 1 7 7 C 1.38816 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00521 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00072 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.46976 * 35.00205 * 10 9 7 12 12 C 1.52995 * 109.46976 * 274.99608 * 10 9 7 13 13 C 1.53000 * 109.47146 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46657 * 60.00356 * 13 12 10 15 15 C 1.52995 * 109.47051 * 299.99701 * 14 13 12 16 16 H 1.08999 * 109.47559 * 299.99918 * 15 14 13 17 17 N 1.46506 * 109.46824 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99873 * 85.00531 * 17 15 14 19 19 O 1.21588 * 120.00208 * 359.97438 * 18 17 15 20 20 C 1.47506 * 120.00014 * 179.97438 * 18 17 15 21 21 C 1.36824 * 126.94627 * 179.97438 * 20 18 17 22 22 C 1.41262 * 103.84906 * 180.02562 * 21 20 18 23 23 C 1.50706 * 126.70332 * 180.02562 * 22 21 20 24 24 F 1.39905 * 109.46815 * 90.00336 * 23 22 21 25 25 F 1.39899 * 109.46947 * 209.99663 * 23 22 21 26 26 F 1.39898 * 109.47403 * 330.00390 * 23 22 21 27 27 N 1.30127 * 106.58782 * 359.97438 * 22 21 20 28 28 O 1.20882 * 111.98676 * 359.70231 * 27 22 21 29 29 C 1.53000 * 109.47146 * 60.00598 * 15 14 13 30 30 H 0.96997 * 119.99928 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00029 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47559 * 300.00406 * 12 10 9 33 33 H 1.09002 * 109.46959 * 60.00233 * 12 10 9 34 34 H 1.09002 * 109.47150 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47446 * 300.00748 * 13 12 10 36 36 H 1.09003 * 109.46645 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47370 * 60.00042 * 14 13 12 38 38 H 0.96995 * 120.00050 * 264.72646 * 17 15 14 39 39 H 1.08005 * 128.07607 * 0.02562 * 21 20 18 40 40 H 1.08999 * 109.47446 * 59.99252 * 29 15 14 41 41 H 1.08994 * 109.47563 * 179.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9683 -3.5508 0.5886 12 6 2.4230 -4.0350 -1.4385 13 6 3.1885 -5.3597 -1.4385 14 6 2.3113 -6.4556 -0.8298 15 6 1.9464 -6.0774 0.6071 16 1 2.8567 -5.9711 1.1972 17 7 1.1069 -7.1271 1.1901 18 6 1.6771 -8.2089 1.7567 19 8 2.8881 -8.3140 1.7837 20 6 0.8319 -9.2655 2.3442 21 6 1.2566 -10.4161 2.9508 22 6 0.0581 -11.0625 3.3264 23 6 -0.0671 -12.3847 4.0388 24 9 -0.0781 -12.1702 5.4212 25 9 -1.2579 -13.0104 3.6546 26 9 1.0183 -13.2005 3.7020 27 7 -0.9166 -10.2929 2.9380 28 8 -0.5133 -9.2897 2.3974 29 6 1.1809 -4.7527 0.6071 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 1.5128 -4.1409 -2.0287 33 1 3.0483 -3.2545 -1.8720 34 1 3.4481 -5.6294 -2.4622 35 1 4.0988 -5.2534 -0.8484 36 1 2.8565 -7.3995 -0.8302 37 1 1.4010 -6.5620 -1.4198 38 1 0.1409 -7.0415 1.1719 39 1 2.2714 -10.7517 3.1061 40 1 0.2706 -4.8591 0.0170 41 1 0.9205 -4.4835 1.6307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981153024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:58 Heat of formation + Delta-G solvation = -138.557347 kcal Electronic energy + Delta-G solvation = -29795.310330 eV Core-core repulsion = 24876.932323 eV Total energy + Delta-G solvation = -4918.378007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.44995 -48.96433 -48.95170 -46.66948 -41.21573 -39.33104 -36.42570 -35.94239 -34.93333 -33.59756 -32.87192 -30.71367 -29.40096 -28.54396 -25.87236 -25.53545 -24.48292 -23.24068 -22.70075 -21.77336 -21.11603 -20.21946 -19.99945 -19.63403 -19.12591 -19.02902 -18.40274 -17.60180 -17.30313 -16.56555 -16.17872 -15.98305 -15.80189 -15.74225 -15.46533 -15.34940 -15.19490 -15.14730 -15.06893 -15.03272 -14.96753 -14.79676 -14.20687 -13.83884 -13.60163 -13.40916 -13.29825 -12.89352 -12.79637 -12.28369 -12.25869 -12.15987 -12.00155 -11.94823 -11.79002 -11.64317 -11.36669 -11.24304 -11.15197 -10.84894 -10.22024 -8.96772 -7.91802 -5.18989 -0.62987 0.18810 0.91439 1.18143 1.49387 1.49767 1.58062 1.71563 1.87943 2.09177 2.46284 2.58716 3.00533 3.21864 3.31657 3.41946 3.57817 3.65559 3.70681 3.88789 4.07084 4.28189 4.35193 4.41452 4.44587 4.56195 4.62520 4.69093 4.81318 4.98766 5.13531 5.20384 5.28006 5.34150 5.40265 5.54195 5.57848 5.70150 6.11592 6.31484 6.44883 6.82047 7.37729 8.14704 8.36952 9.31537 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.001876 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.553801 B =14919.473047 C =15508.323842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.176 3.824 11 H 0.040 0.960 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.119 4.119 15 C 0.158 3.842 16 H 0.084 0.916 17 N -0.693 5.693 18 C 0.612 3.388 19 O -0.532 6.532 20 C -0.067 4.067 21 C -0.101 4.101 22 C -0.093 4.093 23 C 0.566 3.434 24 F -0.164 7.164 25 F -0.167 7.167 26 F -0.154 7.154 27 N -0.303 5.303 28 O 0.165 5.835 29 C -0.118 4.118 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.420 0.580 39 H 0.218 0.782 40 H 0.077 0.923 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -27.192 4.861 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.068 3.932 11 H 0.058 0.942 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.054 3.946 16 H 0.102 0.898 17 N -0.343 5.343 18 C 0.394 3.606 19 O -0.409 6.409 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.250 4.250 23 C 0.511 3.489 24 F -0.145 7.145 25 F -0.149 7.149 26 F -0.135 7.135 27 N 0.008 4.992 28 O 0.077 5.923 29 C -0.157 4.157 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.257 0.743 39 H 0.235 0.765 40 H 0.095 0.905 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.958 -27.338 5.043 27.816 hybrid contribution 0.077 1.011 0.138 1.023 sum 1.035 -26.327 5.181 26.852 Atomic orbital electron populations 1.69795 1.06425 1.25855 1.59893 1.25481 0.96337 1.00830 1.04227 0.85235 0.77779 0.80041 0.77312 1.21634 1.22442 1.19569 1.19579 0.91337 0.85272 1.40348 0.90846 1.42595 1.05489 1.00863 1.88654 1.20325 0.93950 0.84627 0.94321 0.94188 1.22122 0.99659 0.96602 0.98539 1.21411 0.98156 0.93497 1.01417 1.21854 1.00771 0.98708 0.94417 1.20954 0.93788 0.85014 0.94830 0.89753 1.45930 1.11923 1.19516 1.56952 1.16381 0.85749 0.80462 0.77977 1.90915 1.13075 1.77708 1.59164 1.24225 0.83011 0.99781 1.06270 1.22960 1.01161 0.91630 0.96581 1.23545 0.92267 0.99978 1.09241 1.16476 0.74459 0.81515 0.76470 1.93286 1.96136 1.94762 1.30316 1.93264 1.47000 1.83716 1.90884 1.93280 1.54414 1.73703 1.92094 1.73824 1.23163 0.94895 1.07363 1.85051 1.20966 1.31282 1.55006 1.21909 0.99245 0.92832 1.01732 0.94168 0.79451 0.92904 0.94173 0.90626 0.91927 0.91109 0.90592 0.74270 0.76476 0.90467 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -34.88 5.12 -322.94 -1.65 -36.54 16 10 C 0.18 6.25 2.77 44.99 0.12 6.37 16 11 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.13 -4.06 5.50 30.59 0.17 -3.90 16 13 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 14 C -0.12 -2.41 5.49 30.59 0.17 -2.24 16 15 C 0.16 3.41 2.45 44.99 0.11 3.52 16 16 H 0.08 2.06 7.57 -2.39 -0.02 2.04 16 17 N -0.69 -11.77 5.08 -445.73 -2.26 -14.04 16 18 C 0.61 11.36 7.78 86.69 0.67 12.04 16 19 O -0.53 -13.00 16.58 -3.99 -0.07 -13.07 16 20 C -0.07 -1.04 7.29 24.38 0.18 -0.86 16 21 C -0.10 -1.39 10.65 22.68 0.24 -1.15 16 22 C -0.09 -1.47 6.63 43.56 0.29 -1.18 16 23 C 0.57 8.41 3.56 71.24 0.25 8.67 16 24 F -0.16 -2.57 17.30 44.97 0.78 -1.79 16 25 F -0.17 -2.81 17.27 44.97 0.78 -2.03 16 26 F -0.15 -2.05 17.08 44.97 0.77 -1.28 16 27 N -0.30 -5.43 12.00 -48.86 -0.59 -6.02 16 28 O 0.17 2.57 11.04 65.76 0.73 3.30 16 29 C -0.12 -3.17 4.86 30.60 0.15 -3.02 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.42 5.31 8.43 -92.71 -0.78 4.53 16 39 H 0.22 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -64.45 364.95 4.24 -60.22 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.39 Total: 20.95 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 3.84 Total: 0.47 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.22 Total: -114.19 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.66 Total: -9.77 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 2.32 Total: -5.10 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -64.45 4.24 -60.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.338 kcal (2) G-P(sol) polarization free energy of solvation -64.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds