Wall clock time and date at job start Wed Apr 1 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48507 * 109.46963 * 269.99608 * 3 2 1 5 5 H 1.48498 * 109.47130 * 29.99240 * 3 2 1 6 6 H 1.48497 * 109.47048 * 149.99966 * 3 2 1 7 7 C 1.38811 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99781 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47598 * 325.00077 * 10 9 7 12 12 C 1.53004 * 109.47020 * 85.00221 * 10 9 7 13 13 C 1.53001 * 109.46916 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47038 * 299.99245 * 13 12 10 15 15 C 1.53002 * 109.47005 * 60.00702 * 14 13 12 16 16 H 1.09000 * 109.47315 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47231 * 59.99514 * 15 14 13 18 18 C 1.34772 * 119.99827 * 85.00180 * 17 15 14 19 19 O 1.21587 * 120.00487 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00042 * 179.97438 * 18 17 15 21 21 C 1.36816 * 126.94513 * 179.97438 * 20 18 17 22 22 C 1.41260 * 103.84731 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70820 * 180.02562 * 22 21 20 24 24 F 1.39891 * 109.47515 * 184.98311 * 23 22 21 25 25 F 1.39894 * 109.47233 * 304.98825 * 23 22 21 26 26 F 1.39910 * 109.46990 * 64.98333 * 23 22 21 27 27 N 1.30125 * 106.59215 * 0.02562 * 22 21 20 28 28 O 1.20893 * 111.97926 * 359.97438 * 27 22 21 29 29 C 1.53001 * 109.46650 * 299.99535 * 15 14 13 30 30 H 0.96992 * 120.00503 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00303 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47575 * 59.99469 * 12 10 9 33 33 H 1.09000 * 109.46962 * 299.99506 * 12 10 9 34 34 H 1.09007 * 109.46668 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47622 * 59.99906 * 13 12 10 36 36 H 1.09001 * 109.47864 * 300.00452 * 14 13 12 37 37 H 1.09001 * 109.46981 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00233 * 264.99890 * 17 15 14 39 39 H 1.08002 * 128.07965 * 359.97438 * 21 20 18 40 40 H 1.09007 * 109.46668 * 180.02562 * 29 15 14 41 41 H 1.08998 * 109.47622 * 299.99824 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1866 -5.3608 1.4376 14 6 2.3089 -6.4559 0.8283 15 6 1.9451 -6.0772 -0.6087 16 1 1.3201 -6.8575 -1.0430 17 7 3.1690 -5.9349 -1.4011 18 6 3.7351 -7.0191 -1.9672 19 8 3.2297 -8.1152 -1.8207 20 6 4.9672 -6.8758 -2.7656 21 6 5.6573 -7.8731 -3.3989 22 6 6.7407 -7.2009 -4.0072 23 6 7.8304 -7.8209 -4.8433 24 9 8.7792 -6.8462 -5.1700 25 9 8.4466 -8.8474 -4.1196 26 9 7.2770 -8.3448 -6.0167 27 7 6.6138 -5.9417 -3.7046 28 8 5.6398 -5.7372 -3.0183 29 6 1.1805 -4.7519 -0.6087 30 1 -0.4850 0.8399 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.5114 -4.1417 2.0271 33 1 3.0470 -3.2552 1.8719 34 1 3.4462 -5.6304 2.4614 35 1 4.0973 -5.2550 0.8481 36 1 1.3982 -6.5617 1.4179 37 1 2.8534 -7.4001 0.8288 38 1 3.5721 -5.0604 -1.5183 39 1 5.4275 -8.9280 -3.4272 40 1 0.9209 -4.4823 -1.6325 41 1 0.2698 -4.8576 -0.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981153026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:04 Heat of formation + Delta-G solvation = -115.990283 kcal Electronic energy + Delta-G solvation = -30508.974016 eV Core-core repulsion = 25591.574590 eV Total energy + Delta-G solvation = -4917.399425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.72372 -48.24306 -48.21671 -45.86129 -40.38294 -38.19955 -35.31551 -34.62440 -33.42626 -32.59111 -31.22785 -29.78136 -27.97046 -27.78746 -24.93304 -23.80845 -23.62747 -22.22627 -21.57887 -21.11199 -19.71763 -19.25965 -18.98295 -18.88367 -18.32769 -17.65098 -17.25019 -16.56114 -15.95423 -15.60356 -15.10393 -15.06138 -14.99026 -14.62401 -14.58646 -14.47952 -14.35192 -14.33898 -14.22562 -13.87903 -13.56934 -13.12611 -13.08155 -12.60376 -12.55615 -12.19206 -12.02683 -11.87570 -11.51682 -11.05734 -10.93439 -10.88468 -10.67400 -10.47862 -10.43200 -10.28528 -10.23277 -9.84334 -9.61505 -9.24544 -8.93197 -7.03136 -5.82593 -3.11944 0.17576 0.95203 1.66437 2.02439 2.59286 2.74582 2.83248 3.25025 3.39977 3.45744 3.46971 3.72694 3.97398 4.07758 4.38021 4.47900 4.52884 4.87841 4.94083 5.03507 5.05311 5.38058 5.46830 5.58331 5.60959 5.72995 5.85195 5.93850 5.95642 6.05868 6.17525 6.33045 6.41253 6.47855 6.61548 6.85123 6.95404 7.02681 7.27011 7.64278 7.69402 8.35628 9.47271 10.03491 10.37664 11.39848 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.002594 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.507106 B =10793.406697 C =12344.361407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.042 0.958 12 C -0.138 4.138 13 C -0.117 4.117 14 C -0.129 4.129 15 C 0.150 3.850 16 H 0.091 0.909 17 N -0.695 5.695 18 C 0.604 3.396 19 O -0.510 6.510 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.091 4.091 23 C 0.561 3.439 24 F -0.161 7.161 25 F -0.161 7.161 26 F -0.161 7.161 27 N -0.285 5.285 28 O 0.160 5.840 29 C -0.135 4.135 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 -19.149 -5.981 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.060 0.940 12 C -0.178 4.178 13 C -0.156 4.156 14 C -0.167 4.167 15 C 0.046 3.954 16 H 0.109 0.891 17 N -0.347 5.347 18 C 0.385 3.615 19 O -0.386 6.386 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.248 4.248 23 C 0.505 3.495 24 F -0.142 7.142 25 F -0.142 7.142 26 F -0.143 7.143 27 N 0.025 4.975 28 O 0.073 5.927 29 C -0.174 4.174 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.215 0.785 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.906 -18.707 -6.231 23.033 hybrid contribution 0.321 0.622 -0.091 0.705 sum 12.227 -18.086 -6.322 22.728 Atomic orbital electron populations 1.69648 1.05120 1.25741 1.57490 1.24735 0.95487 0.97703 1.02855 0.86225 0.78695 0.83917 0.77557 1.21688 1.21800 1.20736 1.19213 0.90966 0.84057 1.42955 0.91163 1.42402 1.05783 0.99638 1.88590 1.20163 0.93907 0.86044 0.92998 0.94004 1.22305 0.99881 0.95154 1.00488 1.21530 0.98416 0.95643 0.99979 1.21923 1.00991 0.98712 0.95074 1.21165 0.84157 0.99147 0.90883 0.89066 1.46193 1.27917 1.10037 1.50567 1.16400 0.80750 0.85485 0.78819 1.90894 1.61350 1.25491 1.60843 1.24531 0.98650 0.85361 1.04371 1.22645 0.91891 1.02676 0.96508 1.23425 1.01273 0.92316 1.07823 1.16576 0.79340 0.76180 0.77364 1.93273 1.65790 1.62345 1.92823 1.93272 1.83564 1.59826 1.77559 1.93282 1.85302 1.86905 1.48766 1.73886 1.01943 1.16791 1.04872 1.85092 1.26835 1.32191 1.48613 1.22165 0.99392 0.93184 1.02633 0.93468 0.78208 0.92422 0.91926 0.92605 0.92635 0.90607 0.91881 0.75058 0.78481 0.90907 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -16.58 5.12 -53.42 -0.27 -16.85 16 10 C 0.18 3.04 2.60 -67.93 -0.18 2.86 16 11 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 12 C -0.14 -2.16 5.50 -26.73 -0.15 -2.31 16 13 C -0.12 -1.44 5.76 -26.73 -0.15 -1.60 16 14 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 15 C 0.15 1.73 2.78 -67.93 -0.19 1.54 16 16 H 0.09 1.04 7.57 -51.93 -0.39 0.65 16 17 N -0.70 -7.58 4.23 -54.85 -0.23 -7.81 16 18 C 0.60 6.71 7.78 -12.48 -0.10 6.61 16 19 O -0.51 -6.78 16.58 5.29 0.09 -6.69 16 20 C -0.06 -0.63 7.29 -36.31 -0.26 -0.90 16 21 C -0.11 -1.01 10.91 -38.95 -0.43 -1.44 16 22 C -0.09 -0.90 6.58 -82.17 -0.54 -1.44 16 23 C 0.56 5.10 3.53 36.01 0.13 5.22 16 24 F -0.16 -1.64 17.17 2.25 0.04 -1.60 16 25 F -0.16 -1.39 17.30 2.25 0.04 -1.35 16 26 F -0.16 -1.43 17.30 2.25 0.04 -1.39 16 27 N -0.29 -3.22 11.86 33.52 0.40 -2.82 16 28 O 0.16 1.68 11.04 15.56 0.17 1.86 16 29 C -0.14 -1.85 5.07 -26.73 -0.14 -1.99 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.38 9.47 7.80 -40.82 -0.32 9.16 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.41 4.36 6.69 -40.82 -0.27 4.09 16 39 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -29.52 360.68 -5.64 -35.16 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.64 Total: 7.68 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.40 Total: -1.87 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.62 Total: -53.91 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.26 Total: -4.83 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.12 Total: -4.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.52 -5.64 -35.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.834 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds