Wall clock time and date at job start Wed Apr 1 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48507 * 109.46963 * 269.99608 * 3 2 1 5 5 H 1.48498 * 109.47130 * 29.99240 * 3 2 1 6 6 H 1.48497 * 109.47048 * 149.99966 * 3 2 1 7 7 C 1.38811 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99781 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47598 * 325.00077 * 10 9 7 12 12 C 1.53004 * 109.47020 * 85.00221 * 10 9 7 13 13 C 1.53001 * 109.46916 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47038 * 299.99245 * 13 12 10 15 15 C 1.53002 * 109.47005 * 60.00702 * 14 13 12 16 16 H 1.09000 * 109.47315 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47231 * 59.99514 * 15 14 13 18 18 C 1.34772 * 119.99827 * 85.00180 * 17 15 14 19 19 O 1.21587 * 120.00487 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00042 * 179.97438 * 18 17 15 21 21 C 1.36816 * 126.94513 * 179.97438 * 20 18 17 22 22 C 1.41260 * 103.84731 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70820 * 180.02562 * 22 21 20 24 24 F 1.39891 * 109.47515 * 184.98311 * 23 22 21 25 25 F 1.39894 * 109.47233 * 304.98825 * 23 22 21 26 26 F 1.39910 * 109.46990 * 64.98333 * 23 22 21 27 27 N 1.30125 * 106.59215 * 0.02562 * 22 21 20 28 28 O 1.20893 * 111.97926 * 359.97438 * 27 22 21 29 29 C 1.53001 * 109.46650 * 299.99535 * 15 14 13 30 30 H 0.96992 * 120.00503 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00303 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47575 * 59.99469 * 12 10 9 33 33 H 1.09000 * 109.46962 * 299.99506 * 12 10 9 34 34 H 1.09007 * 109.46668 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.47622 * 59.99906 * 13 12 10 36 36 H 1.09001 * 109.47864 * 300.00452 * 14 13 12 37 37 H 1.09001 * 109.46981 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00233 * 264.99890 * 17 15 14 39 39 H 1.08002 * 128.07965 * 359.97438 * 21 20 18 40 40 H 1.09007 * 109.46668 * 180.02562 * 29 15 14 41 41 H 1.08998 * 109.47622 * 299.99824 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1866 -5.3608 1.4376 14 6 2.3089 -6.4559 0.8283 15 6 1.9451 -6.0772 -0.6087 16 1 1.3201 -6.8575 -1.0430 17 7 3.1690 -5.9349 -1.4011 18 6 3.7351 -7.0191 -1.9672 19 8 3.2297 -8.1152 -1.8207 20 6 4.9672 -6.8758 -2.7656 21 6 5.6573 -7.8731 -3.3989 22 6 6.7407 -7.2009 -4.0072 23 6 7.8304 -7.8209 -4.8433 24 9 8.7792 -6.8462 -5.1700 25 9 8.4466 -8.8474 -4.1196 26 9 7.2770 -8.3448 -6.0167 27 7 6.6138 -5.9417 -3.7046 28 8 5.6398 -5.7372 -3.0183 29 6 1.1805 -4.7519 -0.6087 30 1 -0.4850 0.8399 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.5114 -4.1417 2.0271 33 1 3.0470 -3.2552 1.8719 34 1 3.4462 -5.6304 2.4614 35 1 4.0973 -5.2550 0.8481 36 1 1.3982 -6.5617 1.4179 37 1 2.8534 -7.4001 0.8288 38 1 3.5721 -5.0604 -1.5183 39 1 5.4275 -8.9280 -3.4272 40 1 0.9209 -4.4823 -1.6325 41 1 0.2698 -4.8576 -0.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981153026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:03 Heat of formation + Delta-G solvation = -134.032841 kcal Electronic energy + Delta-G solvation = -30509.756400 eV Core-core repulsion = 25591.574590 eV Total energy + Delta-G solvation = -4918.181809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.44770 -48.96372 -48.94376 -46.65618 -41.35524 -39.32426 -36.29800 -35.92755 -34.61685 -33.54244 -32.84500 -30.89130 -29.48520 -28.53873 -25.87548 -25.52408 -24.47201 -23.30645 -22.57580 -22.25920 -20.62631 -20.07680 -19.99537 -19.63657 -19.12246 -19.09744 -18.39569 -17.47114 -16.99023 -16.80531 -16.33805 -15.94154 -15.78664 -15.75984 -15.58089 -15.34547 -15.14124 -15.07561 -15.06401 -15.01257 -14.98732 -14.77459 -13.88833 -13.83162 -13.53017 -13.36296 -13.06385 -13.01114 -12.85100 -12.80160 -12.28346 -12.20624 -12.03475 -11.91928 -11.62661 -11.56472 -11.40926 -11.23197 -10.97885 -10.82113 -10.18111 -8.95014 -7.90721 -5.17650 -0.61898 0.20071 0.91711 1.22866 1.49859 1.50111 1.58046 1.73506 1.92219 2.09910 2.47950 2.58748 3.01456 3.21686 3.33065 3.43273 3.56896 3.69426 3.75039 3.91152 3.95484 4.32905 4.33739 4.39314 4.41690 4.59702 4.69274 4.75400 4.85763 4.91511 5.13767 5.20790 5.28694 5.36030 5.42814 5.55395 5.59357 5.69267 6.12628 6.32384 6.44847 6.80676 7.38873 8.16605 8.37520 9.32757 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.002594 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.507106 B =10793.406697 C =12344.361407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.173 3.827 11 H 0.046 0.954 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.159 3.841 16 H 0.100 0.900 17 N -0.694 5.694 18 C 0.613 3.387 19 O -0.529 6.529 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.093 4.093 23 C 0.567 3.433 24 F -0.168 7.168 25 F -0.156 7.156 26 F -0.159 7.159 27 N -0.306 5.306 28 O 0.158 5.842 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 -20.913 -6.086 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.794 3.206 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.065 3.935 11 H 0.064 0.936 12 C -0.169 4.169 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.055 3.945 16 H 0.118 0.882 17 N -0.346 5.346 18 C 0.395 3.605 19 O -0.407 6.407 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.250 4.250 23 C 0.511 3.489 24 F -0.150 7.150 25 F -0.137 7.137 26 F -0.140 7.140 27 N 0.005 4.995 28 O 0.071 5.929 29 C -0.162 4.162 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.181 -20.510 -6.335 25.190 hybrid contribution -0.008 1.082 -0.072 1.085 sum 13.173 -19.428 -6.407 24.331 Atomic orbital electron populations 1.69792 1.06471 1.25783 1.60022 1.25448 0.96237 1.00761 1.04343 0.85276 0.77803 0.80251 0.77286 1.21678 1.22684 1.19531 1.19588 0.91382 0.85231 1.40110 0.90608 1.42627 1.05476 1.00937 1.88561 1.20429 0.94138 0.84754 0.94171 0.93611 1.22123 0.99540 0.96480 0.98791 1.21441 0.98238 0.93815 1.01121 1.21891 1.01259 0.98413 0.94554 1.21053 0.84277 0.97682 0.91498 0.88193 1.46150 1.27720 1.10208 1.50492 1.16344 0.80719 0.85002 0.78395 1.90889 1.62043 1.26100 1.61629 1.24362 0.98624 0.85607 1.04976 1.22952 0.90728 1.03503 0.94962 1.23589 1.01637 0.92060 1.07749 1.16464 0.79030 0.76067 0.77330 1.93260 1.66066 1.62743 1.92885 1.93284 1.83463 1.59543 1.77456 1.93289 1.85243 1.86824 1.48639 1.73877 1.02422 1.17700 1.05545 1.85079 1.26778 1.32437 1.48633 1.22001 0.99145 0.93195 1.01861 0.94245 0.79568 0.93190 0.94370 0.91342 0.92078 0.89715 0.90996 0.74880 0.76164 0.91563 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 2 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.96 45.04 29.55 68.60 2.03 47.07 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.23 -12.08 9.93 84.03 0.83 -11.24 16 8 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -33.96 5.12 -322.93 -1.65 -35.61 16 10 C 0.17 5.76 2.60 44.99 0.12 5.88 16 11 H 0.05 1.50 6.45 -2.39 -0.02 1.48 16 12 C -0.13 -3.94 5.50 30.60 0.17 -3.77 16 13 C -0.11 -2.41 5.76 30.59 0.18 -2.23 16 14 C -0.12 -2.41 5.60 30.59 0.17 -2.24 16 15 C 0.16 3.30 2.78 44.99 0.13 3.43 16 16 H 0.10 2.02 7.57 -2.39 -0.02 2.00 16 17 N -0.69 -13.74 4.23 -445.72 -1.88 -15.63 16 18 C 0.61 12.27 7.78 86.69 0.67 12.95 16 19 O -0.53 -12.74 16.58 -3.99 -0.07 -12.81 16 20 C -0.07 -1.26 7.29 24.39 0.18 -1.08 16 21 C -0.10 -1.52 10.91 22.68 0.25 -1.27 16 22 C -0.09 -1.67 6.58 43.55 0.29 -1.39 16 23 C 0.57 9.38 3.53 71.24 0.25 9.63 16 24 F -0.17 -3.23 17.17 44.97 0.77 -2.45 16 25 F -0.16 -2.40 17.30 44.97 0.78 -1.62 16 26 F -0.16 -2.54 17.30 44.97 0.78 -1.76 16 27 N -0.31 -6.51 11.86 -48.87 -0.58 -7.09 16 28 O 0.16 3.11 11.04 65.85 0.73 3.84 16 29 C -0.12 -3.24 5.07 30.60 0.16 -3.09 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.37 18.71 7.80 -92.71 -0.72 17.99 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.41 8.08 6.69 -92.71 -0.62 7.46 16 39 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.90 360.68 4.81 -58.09 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.23 Total: 23.55 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.85 Total: 1.84 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.84 Total: -115.73 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.66 Total: -8.97 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 2.33 Total: -5.84 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.90 4.81 -58.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.944 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds