Wall clock time and date at job start Wed Apr 1 2020 04:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47450 * 269.99487 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46820 * 149.99717 * 3 2 1 7 7 C 1.38812 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00212 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99597 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00035 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 324.99865 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00367 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.09002 * 109.47153 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46983 * 59.99859 * 15 14 13 18 18 C 1.34773 * 120.00128 * 85.00506 * 17 15 14 19 19 O 1.21613 * 120.00464 * 359.97438 * 18 17 15 20 20 C 1.47416 * 120.00142 * 179.97438 * 18 17 15 21 21 N 1.36067 * 126.44818 * 0.02562 * 20 18 17 22 22 C 1.29939 * 108.48001 * 180.02562 * 21 20 18 23 23 O 1.34051 * 109.24219 * 359.97438 * 22 21 20 24 24 C 1.34256 * 108.22569 * 359.73190 * 23 22 21 25 25 C 1.50704 * 126.52746 * 180.26945 * 24 23 22 26 26 F 1.39905 * 109.46775 * 270.18712 * 25 24 23 27 27 F 1.39893 * 109.47114 * 30.18577 * 25 24 23 28 28 F 1.39900 * 109.47342 * 150.19138 * 25 24 23 29 29 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 30 30 H 0.97001 * 120.00319 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99935 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 33 33 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 34 34 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 35 35 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 38 38 H 0.97001 * 119.99679 * 264.99221 * 17 15 14 39 39 H 1.08000 * 125.38389 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.47839 * 300.00447 * 29 15 14 41 41 H 1.09000 * 109.47160 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5650 -3.2064 0.5898 12 6 4.2577 -2.9757 -1.4369 13 6 5.0222 -4.3010 -1.4368 14 6 6.4096 -4.0894 -0.8275 15 6 6.2639 -3.5847 0.6094 16 1 7.2524 -3.4344 1.0436 17 7 5.5281 -4.5729 1.4019 18 6 6.1832 -5.6056 1.9682 19 8 7.3852 -5.7174 1.8210 20 6 5.4428 -6.5997 2.7661 21 7 4.1050 -6.6029 3.0142 22 6 3.8255 -7.6346 3.7531 23 8 4.9515 -8.3184 4.0010 24 6 5.9677 -7.6906 3.3880 25 6 7.4149 -8.1111 3.3917 26 9 8.0689 -7.5220 4.4791 27 9 7.4955 -9.5037 3.4976 28 9 8.0236 -7.6978 2.2018 29 6 5.4996 -2.2593 0.6093 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.2693 -3.1268 -1.8709 33 1 4.8049 -2.2402 -2.0266 34 1 4.4747 -5.0363 -0.8472 35 1 5.1256 -4.6609 -2.4605 36 1 6.9544 -5.0335 -0.8279 37 1 6.9572 -3.3543 -1.4173 38 1 4.5693 -4.4838 1.5191 39 1 2.8415 -7.8999 4.1103 40 1 6.0470 -1.5241 0.0197 41 1 5.3962 -1.8994 1.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981182257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:54 Heat of formation + Delta-G solvation = -143.550907 kcal Electronic energy + Delta-G solvation = -31483.169889 eV Core-core repulsion = 26564.575346 eV Total energy + Delta-G solvation = -4918.594544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.51047 -48.08206 -47.92156 -44.14000 -40.21883 -38.13779 -35.55378 -34.70139 -33.11411 -32.04686 -31.38050 -29.88795 -28.40800 -26.86136 -24.64097 -23.52400 -22.97171 -22.16411 -21.31755 -20.96530 -19.50084 -19.07648 -18.98903 -18.64992 -18.15357 -17.61167 -17.29238 -16.46259 -15.75943 -15.50653 -15.11670 -14.93418 -14.78514 -14.61195 -14.51615 -14.41405 -14.22954 -14.08523 -13.92406 -13.80837 -13.67433 -13.08443 -12.86100 -12.71775 -12.33297 -12.02219 -11.96451 -11.86982 -11.45370 -11.29070 -11.02541 -10.93718 -10.48145 -10.32269 -10.30607 -10.10956 -10.01452 -9.75551 -9.60317 -9.09827 -8.91301 -7.30498 -5.79831 -3.15671 0.13830 1.23281 1.49666 2.50881 2.77471 2.89708 3.23652 3.35237 3.38143 3.43567 3.45782 3.82736 3.89092 4.22101 4.56437 4.59875 4.82019 4.83666 4.96918 5.03874 5.36610 5.40092 5.44831 5.55519 5.57944 5.73509 5.81250 5.91458 5.97509 6.07478 6.18202 6.34844 6.39571 6.44507 6.59755 6.69332 6.82991 6.96536 7.36863 7.93868 7.96106 8.39111 9.17410 9.90035 10.09445 11.38427 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002802 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.094407 B = 9991.226882 C =10703.679106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.184 3.816 11 H 0.052 0.948 12 C -0.137 4.137 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.151 3.849 16 H 0.090 0.910 17 N -0.690 5.690 18 C 0.586 3.414 19 O -0.517 6.517 20 C 0.023 3.977 21 N -0.459 5.459 22 C 0.224 3.776 23 O -0.172 6.172 24 C -0.091 4.091 25 C 0.565 3.435 26 F -0.160 7.160 27 F -0.169 7.169 28 F -0.124 7.124 29 C -0.138 4.138 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.271 0.729 40 H 0.078 0.922 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 -18.252 6.897 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 H 0.069 0.931 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.167 4.167 15 C 0.047 3.953 16 H 0.108 0.892 17 N -0.343 5.343 18 C 0.369 3.631 19 O -0.393 6.393 20 C -0.100 4.100 21 N -0.187 5.187 22 C -0.003 4.003 23 O -0.058 6.058 24 C -0.148 4.148 25 C 0.510 3.490 26 F -0.141 7.141 27 F -0.150 7.150 28 F -0.105 7.105 29 C -0.177 4.177 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.287 0.713 40 H 0.097 0.903 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.941 -17.928 6.590 23.647 hybrid contribution 0.315 0.690 0.355 0.837 sum 14.257 -17.238 6.945 23.423 Atomic orbital electron populations 1.69701 1.05113 1.25827 1.57505 1.24670 0.95215 0.97197 1.02023 0.86556 0.79207 0.85032 0.77750 1.21132 1.21807 1.20319 1.19059 0.80530 0.94677 1.43017 0.89191 1.42772 1.04023 1.01912 1.90309 1.20139 0.89817 0.89202 0.93439 0.93057 1.22246 1.00212 0.95303 0.99929 1.21513 0.95373 0.98573 1.00041 1.21920 0.98050 1.01624 0.95087 1.21075 0.95920 0.87289 0.91048 0.89204 1.46027 1.13017 1.24792 1.50416 1.16724 0.86269 0.80966 0.79185 1.90929 1.12737 1.74508 1.61117 1.21940 0.90342 0.96421 1.01251 1.71041 1.11834 1.20719 1.15155 1.28607 0.91135 0.86483 0.94115 1.84388 1.15964 1.48034 1.57399 1.23148 0.90193 0.97334 1.04169 1.16467 0.81928 0.74788 0.75860 1.93286 1.82096 1.83900 1.54842 1.93256 1.96616 1.29252 1.95900 1.93454 1.82972 1.89411 1.44617 1.22182 0.97671 0.95365 1.02437 0.93068 0.80632 0.91500 0.92573 0.92441 0.92538 0.91765 0.90826 0.74766 0.71319 0.90315 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.65 27.74 -169.99 -4.71 16.94 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.75 -16.75 4.93 -53.42 -0.26 -17.01 16 10 C 0.18 3.23 2.60 -67.93 -0.18 3.05 16 11 H 0.05 0.94 6.44 -51.93 -0.33 0.60 16 12 C -0.14 -2.22 5.50 -26.73 -0.15 -2.37 16 13 C -0.12 -1.56 5.77 -26.73 -0.15 -1.71 16 14 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 15 C 0.15 1.94 2.78 -67.93 -0.19 1.75 16 16 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 17 N -0.69 -9.03 4.23 -54.89 -0.23 -9.26 16 18 C 0.59 7.98 7.72 -12.53 -0.10 7.88 16 19 O -0.52 -7.87 12.82 5.27 0.07 -7.80 16 20 C 0.02 0.28 6.96 -83.02 -0.58 -0.30 16 21 N -0.46 -4.94 11.06 -11.48 -0.13 -5.07 16 22 C 0.22 1.54 13.19 51.96 0.69 2.23 16 23 O -0.17 -1.49 10.72 6.51 0.07 -1.42 16 24 C -0.09 -1.00 6.75 -35.08 -0.24 -1.23 16 25 C 0.57 6.31 3.34 36.01 0.12 6.43 16 26 F -0.16 -1.83 17.30 2.25 0.04 -1.79 16 27 F -0.17 -1.73 17.30 2.25 0.04 -1.69 16 28 F -0.12 -1.59 13.49 2.25 0.03 -1.56 16 29 C -0.14 -1.98 5.08 -26.73 -0.14 -2.11 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.54 6.59 -40.82 -0.27 5.28 16 39 H 0.27 0.30 8.06 -52.49 -0.42 -0.13 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -32.88 350.78 -4.94 -37.81 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.60 Total: 8.39 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.31 Total: 5.17 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.15 Total: -59.34 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.14 Total: -9.23 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.88 -4.94 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981182257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.738 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds