Wall clock time and date at job start Wed Apr 1 2020 04:21:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86797 * 119.99735 * 2 1
4 4 H 1.48496 * 109.47450 * 269.99487 * 3 2 1
5 5 H 1.48497 * 109.47342 * 30.00250 * 3 2 1
6 6 H 1.48504 * 109.46820 * 149.99717 * 3 2 1
7 7 C 1.38812 * 119.99618 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00212 * 0.02562 * 7 2 1
9 9 N 1.36936 * 119.99597 * 179.97438 * 7 2 1
10 10 C 1.46500 * 120.00035 * 180.02562 * 9 7 2
11 11 H 1.09001 * 109.47297 * 324.99865 * 10 9 7
12 12 C 1.52997 * 109.47007 * 85.00367 * 10 9 7
13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9
14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10
15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12
16 16 H 1.09002 * 109.47153 * 179.97438 * 15 14 13
17 17 N 1.46497 * 109.46983 * 59.99859 * 15 14 13
18 18 C 1.34773 * 120.00128 * 85.00506 * 17 15 14
19 19 O 1.21613 * 120.00464 * 359.97438 * 18 17 15
20 20 C 1.47416 * 120.00142 * 179.97438 * 18 17 15
21 21 N 1.36067 * 126.44818 * 0.02562 * 20 18 17
22 22 C 1.29939 * 108.48001 * 180.02562 * 21 20 18
23 23 O 1.34051 * 109.24219 * 359.97438 * 22 21 20
24 24 C 1.34256 * 108.22569 * 359.73190 * 23 22 21
25 25 C 1.50704 * 126.52746 * 180.26945 * 24 23 22
26 26 F 1.39905 * 109.46775 * 270.18712 * 25 24 23
27 27 F 1.39893 * 109.47114 * 30.18577 * 25 24 23
28 28 F 1.39900 * 109.47342 * 150.19138 * 25 24 23
29 29 C 1.52999 * 109.46991 * 299.99311 * 15 14 13
30 30 H 0.97001 * 120.00319 * 0.02562 * 1 2 3
31 31 H 0.97002 * 119.99935 * 0.02562 * 9 7 2
32 32 H 1.09002 * 109.47153 * 299.99911 * 12 10 9
33 33 H 1.08996 * 109.46952 * 60.00083 * 12 10 9
34 34 H 1.08996 * 109.47407 * 60.00219 * 13 12 10
35 35 H 1.09000 * 109.46986 * 179.97438 * 13 12 10
36 36 H 1.09001 * 109.46993 * 180.02562 * 14 13 12
37 37 H 1.09000 * 109.47380 * 299.99696 * 14 13 12
38 38 H 0.97001 * 119.99679 * 264.99221 * 17 15 14
39 39 H 1.08000 * 125.38389 * 180.02562 * 22 21 20
40 40 H 1.08993 * 109.47839 * 300.00447 * 29 15 14
41 41 H 1.09000 * 109.47160 * 180.02562 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4476 2.6527 0.7001
6 1 3.5477 1.4402 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3796 -1.2022 0.0000
10 6 4.1121 -2.4709 0.0000
11 1 3.5650 -3.2064 0.5898
12 6 4.2577 -2.9757 -1.4369
13 6 5.0222 -4.3010 -1.4368
14 6 6.4096 -4.0894 -0.8275
15 6 6.2639 -3.5847 0.6094
16 1 7.2524 -3.4344 1.0436
17 7 5.5281 -4.5729 1.4019
18 6 6.1832 -5.6056 1.9682
19 8 7.3852 -5.7174 1.8210
20 6 5.4428 -6.5997 2.7661
21 7 4.1050 -6.6029 3.0142
22 6 3.8255 -7.6346 3.7531
23 8 4.9515 -8.3184 4.0010
24 6 5.9677 -7.6906 3.3880
25 6 7.4149 -8.1111 3.3917
26 9 8.0689 -7.5220 4.4791
27 9 7.4955 -9.5037 3.4976
28 9 8.0236 -7.6978 2.2018
29 6 5.4996 -2.2593 0.6093
30 1 -0.4850 0.8400 -0.0004
31 1 3.8646 -0.3621 -0.0004
32 1 3.2693 -3.1268 -1.8709
33 1 4.8049 -2.2402 -2.0266
34 1 4.4747 -5.0363 -0.8472
35 1 5.1256 -4.6609 -2.4605
36 1 6.9544 -5.0335 -0.8279
37 1 6.9572 -3.3543 -1.4173
38 1 4.5693 -4.4838 1.5191
39 1 2.8415 -7.8999 4.1103
40 1 6.0470 -1.5241 0.0197
41 1 5.3962 -1.8994 1.6330
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981182257.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:21:53
Heat of formation + Delta-G solvation = -168.232019 kcal
Electronic energy + Delta-G solvation = -31484.240143 eV
Core-core repulsion = 26564.575346 eV
Total energy + Delta-G solvation = -4919.664797 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-51.38407 -48.93497 -48.83002 -44.86579 -41.30396 -39.35084 -36.34226 -36.28700
-34.47045 -33.23292 -32.83513 -31.07410 -29.93013 -27.71694 -25.56863 -25.26066
-23.83136 -23.28203 -22.49140 -22.17972 -20.45302 -20.30945 -19.86242 -19.54298
-19.44892 -19.01907 -18.04297 -17.29688 -16.89053 -16.71339 -16.42021 -16.09803
-15.78471 -15.71209 -15.42300 -15.35194 -15.32863 -15.20172 -15.03224 -14.94737
-14.77617 -14.66802 -14.24177 -13.93541 -13.75331 -13.10878 -13.09084 -12.98882
-12.85863 -12.77650 -12.39359 -12.20811 -11.96623 -11.81140 -11.64833 -11.55043
-11.36252 -11.05241 -10.87893 -10.80881 -10.13264 -9.27611 -7.98948 -5.31877
-0.67966 0.46493 0.79096 1.40381 1.43326 1.50567 1.69167 1.85095
1.92688 2.44197 2.51421 2.77490 2.98772 3.02264 3.32294 3.34413
3.47372 3.79655 3.85218 3.90212 4.11710 4.16818 4.26925 4.32280
4.52456 4.63518 4.68313 4.77130 4.82414 4.90076 5.06662 5.15468
5.20662 5.34304 5.39402 5.50591 5.61013 5.81615 5.96573 6.25135
6.33908 6.90139 7.11805 7.88032 8.06860 9.22624
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017739 B = 0.002802 C = 0.002615
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1578.094407 B = 9991.226882 C =10703.679106
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.986 5.986
2 C -0.066 4.066
3 Si 0.953 3.047
4 H -0.281 1.281
5 H -0.300 1.300
6 H -0.249 1.249
7 C -0.224 4.224
8 H 0.057 0.943
9 N -0.751 5.751
10 C 0.178 3.822
11 H 0.040 0.960
12 C -0.128 4.128
13 C -0.107 4.107
14 C -0.121 4.121
15 C 0.155 3.845
16 H 0.097 0.903
17 N -0.690 5.690
18 C 0.584 3.416
19 O -0.536 6.536
20 C 0.008 3.992
21 N -0.496 5.496
22 C 0.254 3.746
23 O -0.168 6.168
24 C -0.096 4.096
25 C 0.567 3.433
26 F -0.163 7.163
27 F -0.164 7.164
28 F -0.136 7.136
29 C -0.126 4.126
30 H 0.256 0.744
31 H 0.365 0.635
32 H 0.036 0.964
33 H 0.062 0.938
34 H 0.051 0.949
35 H 0.070 0.930
36 H 0.065 0.935
37 H 0.091 0.909
38 H 0.412 0.588
39 H 0.325 0.675
40 H 0.095 0.905
41 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.406 -18.642 7.330 25.271
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.637 5.637
2 C -0.257 4.257
3 Si 0.781 3.219
4 H -0.207 1.207
5 H -0.227 1.227
6 H -0.173 1.173
7 C -0.355 4.355
8 H 0.075 0.925
9 N -0.394 5.394
10 C 0.070 3.930
11 H 0.058 0.942
12 C -0.168 4.168
13 C -0.145 4.145
14 C -0.160 4.160
15 C 0.051 3.949
16 H 0.115 0.885
17 N -0.341 5.341
18 C 0.368 3.632
19 O -0.414 6.414
20 C -0.114 4.114
21 N -0.224 5.224
22 C 0.028 3.972
23 O -0.054 6.054
24 C -0.154 4.154
25 C 0.511 3.489
26 F -0.144 7.144
27 F -0.145 7.145
28 F -0.116 7.116
29 C -0.164 4.164
30 H 0.065 0.935
31 H 0.199 0.801
32 H 0.055 0.945
33 H 0.081 0.919
34 H 0.070 0.930
35 H 0.088 0.912
36 H 0.083 0.917
37 H 0.109 0.891
38 H 0.250 0.750
39 H 0.339 0.661
40 H 0.113 0.887
41 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 15.653 -18.350 7.019 25.119
hybrid contribution -0.277 0.648 0.253 0.749
sum 15.376 -17.701 7.272 24.549
Atomic orbital electron populations
1.69886 1.07161 1.26508 1.60106 1.25476 0.96046 1.01161 1.03010
0.85433 0.78772 0.79777 0.77927 1.20730 1.22729 1.17318 1.19004
0.82644 0.93267 1.40543 0.92545 1.42783 1.02401 1.03922 1.90260
1.20356 0.91167 0.87005 0.94463 0.94152 1.22083 0.99159 0.97118
0.98470 1.21416 0.95571 0.96552 1.01004 1.21879 0.97227 1.02197
0.94660 1.21061 0.95823 0.86458 0.91562 0.88471 1.46036 1.12833
1.24856 1.50421 1.16922 0.86155 0.81124 0.79045 1.90911 1.13521
1.75057 1.61915 1.21775 0.91177 0.96604 1.01871 1.71041 1.11185
1.22876 1.17307 1.29845 0.91902 0.84342 0.91144 1.84426 1.15965
1.47915 1.57075 1.22996 0.90463 0.97365 1.04623 1.16444 0.82115
0.74936 0.75359 1.93275 1.82250 1.84010 1.54908 1.93263 1.96617
1.28763 1.95837 1.93424 1.83288 1.89597 1.45332 1.22052 0.95563
0.96696 1.02135 0.93520 0.80123 0.94528 0.91929 0.93020 0.91150
0.91667 0.89097 0.75045 0.66118 0.88689 0.91293
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -62.45 13.97 21.65 0.30 -62.14 16
2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16
3 Si 0.95 44.56 27.74 68.60 1.90 46.46 16
4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16
6 H -0.25 -10.33 6.52 99.48 0.65 -9.69 16
7 C -0.22 -12.31 10.41 84.03 0.87 -11.43 16
8 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16
9 N -0.75 -33.01 4.93 -322.94 -1.59 -34.60 16
10 C 0.18 6.11 2.60 44.99 0.12 6.23 16
11 H 0.04 1.48 6.44 -2.39 -0.02 1.47 16
12 C -0.13 -4.05 5.50 30.59 0.17 -3.88 16
13 C -0.11 -2.69 5.77 30.59 0.18 -2.51 16
14 C -0.12 -2.70 5.60 30.59 0.17 -2.53 16
15 C 0.16 3.69 2.78 44.99 0.13 3.81 16
16 H 0.10 2.26 7.58 -2.39 -0.02 2.24 16
17 N -0.69 -17.45 4.23 -445.82 -1.89 -19.33 16
18 C 0.58 15.51 7.72 86.66 0.67 16.18 16
19 O -0.54 -15.97 12.82 -4.07 -0.05 -16.02 16
20 C 0.01 0.18 6.96 40.41 0.28 0.46 16
21 N -0.50 -9.99 11.06 -305.14 -3.37 -13.36 16
22 C 0.25 2.80 13.19 130.52 1.72 4.52 16
23 O -0.17 -2.55 10.72 0.38 0.00 -2.55 16
24 C -0.10 -2.01 6.75 25.19 0.17 -1.84 16
25 C 0.57 12.28 3.34 71.24 0.24 12.52 16
26 F -0.16 -3.64 17.30 44.97 0.78 -2.86 16
27 F -0.16 -3.19 17.30 44.97 0.78 -2.41 16
28 F -0.14 -3.44 13.49 44.97 0.61 -2.83 16
29 C -0.13 -3.35 5.08 30.60 0.16 -3.19 16
30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
31 H 0.37 15.38 5.66 -92.71 -0.52 14.86 16
32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
34 H 0.05 1.36 7.60 -2.39 -0.02 1.34 16
35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
38 H 0.41 10.89 6.59 -92.71 -0.61 10.28 16
39 H 0.32 -0.71 8.06 -2.91 -0.02 -0.73 16
40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16
41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
Total: -1.00 -73.18 350.78 2.73 -70.45
By element:
Atomic # 1 Polarization: 24.26 SS G_CDS: -0.08 Total: 24.18 kcal
Atomic # 6 Polarization: 9.67 SS G_CDS: 5.34 Total: 15.01 kcal
Atomic # 7 Polarization: -122.89 SS G_CDS: -6.55 Total: -129.44 kcal
Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal
Atomic # 9 Polarization: -10.26 SS G_CDS: 2.16 Total: -8.10 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal
Total: -73.18 2.73 -70.45 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981182257.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.780 kcal
(2) G-P(sol) polarization free energy of solvation -73.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.959 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -168.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds