Wall clock time and date at job start Wed Apr 1 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47450 * 269.99487 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46820 * 149.99717 * 3 2 1 7 7 C 1.38812 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00212 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99597 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00035 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 324.99865 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00367 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.09002 * 109.47153 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46983 * 59.99859 * 15 14 13 18 18 C 1.34773 * 120.00128 * 85.00506 * 17 15 14 19 19 O 1.21613 * 120.00464 * 359.97438 * 18 17 15 20 20 C 1.47416 * 120.00142 * 179.97438 * 18 17 15 21 21 N 1.36067 * 126.44818 * 0.02562 * 20 18 17 22 22 C 1.29939 * 108.48001 * 180.02562 * 21 20 18 23 23 O 1.34051 * 109.24219 * 359.97438 * 22 21 20 24 24 C 1.34256 * 108.22569 * 359.73190 * 23 22 21 25 25 C 1.50704 * 126.52746 * 180.26945 * 24 23 22 26 26 F 1.39905 * 109.46775 * 270.18712 * 25 24 23 27 27 F 1.39893 * 109.47114 * 30.18577 * 25 24 23 28 28 F 1.39900 * 109.47342 * 150.19138 * 25 24 23 29 29 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 30 30 H 0.97001 * 120.00319 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99935 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 33 33 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 34 34 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 35 35 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 38 38 H 0.97001 * 119.99679 * 264.99221 * 17 15 14 39 39 H 1.08000 * 125.38389 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.47839 * 300.00447 * 29 15 14 41 41 H 1.09000 * 109.47160 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5650 -3.2064 0.5898 12 6 4.2577 -2.9757 -1.4369 13 6 5.0222 -4.3010 -1.4368 14 6 6.4096 -4.0894 -0.8275 15 6 6.2639 -3.5847 0.6094 16 1 7.2524 -3.4344 1.0436 17 7 5.5281 -4.5729 1.4019 18 6 6.1832 -5.6056 1.9682 19 8 7.3852 -5.7174 1.8210 20 6 5.4428 -6.5997 2.7661 21 7 4.1050 -6.6029 3.0142 22 6 3.8255 -7.6346 3.7531 23 8 4.9515 -8.3184 4.0010 24 6 5.9677 -7.6906 3.3880 25 6 7.4149 -8.1111 3.3917 26 9 8.0689 -7.5220 4.4791 27 9 7.4955 -9.5037 3.4976 28 9 8.0236 -7.6978 2.2018 29 6 5.4996 -2.2593 0.6093 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.2693 -3.1268 -1.8709 33 1 4.8049 -2.2402 -2.0266 34 1 4.4747 -5.0363 -0.8472 35 1 5.1256 -4.6609 -2.4605 36 1 6.9544 -5.0335 -0.8279 37 1 6.9572 -3.3543 -1.4173 38 1 4.5693 -4.4838 1.5191 39 1 2.8415 -7.8999 4.1103 40 1 6.0470 -1.5241 0.0197 41 1 5.3962 -1.8994 1.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981182257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:53 Heat of formation + Delta-G solvation = -168.232019 kcal Electronic energy + Delta-G solvation = -31484.240143 eV Core-core repulsion = 26564.575346 eV Total energy + Delta-G solvation = -4919.664797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.38407 -48.93497 -48.83002 -44.86579 -41.30396 -39.35084 -36.34226 -36.28700 -34.47045 -33.23292 -32.83513 -31.07410 -29.93013 -27.71694 -25.56863 -25.26066 -23.83136 -23.28203 -22.49140 -22.17972 -20.45302 -20.30945 -19.86242 -19.54298 -19.44892 -19.01907 -18.04297 -17.29688 -16.89053 -16.71339 -16.42021 -16.09803 -15.78471 -15.71209 -15.42300 -15.35194 -15.32863 -15.20172 -15.03224 -14.94737 -14.77617 -14.66802 -14.24177 -13.93541 -13.75331 -13.10878 -13.09084 -12.98882 -12.85863 -12.77650 -12.39359 -12.20811 -11.96623 -11.81140 -11.64833 -11.55043 -11.36252 -11.05241 -10.87893 -10.80881 -10.13264 -9.27611 -7.98948 -5.31877 -0.67966 0.46493 0.79096 1.40381 1.43326 1.50567 1.69167 1.85095 1.92688 2.44197 2.51421 2.77490 2.98772 3.02264 3.32294 3.34413 3.47372 3.79655 3.85218 3.90212 4.11710 4.16818 4.26925 4.32280 4.52456 4.63518 4.68313 4.77130 4.82414 4.90076 5.06662 5.15468 5.20662 5.34304 5.39402 5.50591 5.61013 5.81615 5.96573 6.25135 6.33908 6.90139 7.11805 7.88032 8.06860 9.22624 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002802 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.094407 B = 9991.226882 C =10703.679106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.249 1.249 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.751 5.751 10 C 0.178 3.822 11 H 0.040 0.960 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.121 4.121 15 C 0.155 3.845 16 H 0.097 0.903 17 N -0.690 5.690 18 C 0.584 3.416 19 O -0.536 6.536 20 C 0.008 3.992 21 N -0.496 5.496 22 C 0.254 3.746 23 O -0.168 6.168 24 C -0.096 4.096 25 C 0.567 3.433 26 F -0.163 7.163 27 F -0.164 7.164 28 F -0.136 7.136 29 C -0.126 4.126 30 H 0.256 0.744 31 H 0.365 0.635 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.412 0.588 39 H 0.325 0.675 40 H 0.095 0.905 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.406 -18.642 7.330 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.173 1.173 7 C -0.355 4.355 8 H 0.075 0.925 9 N -0.394 5.394 10 C 0.070 3.930 11 H 0.058 0.942 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.160 4.160 15 C 0.051 3.949 16 H 0.115 0.885 17 N -0.341 5.341 18 C 0.368 3.632 19 O -0.414 6.414 20 C -0.114 4.114 21 N -0.224 5.224 22 C 0.028 3.972 23 O -0.054 6.054 24 C -0.154 4.154 25 C 0.511 3.489 26 F -0.144 7.144 27 F -0.145 7.145 28 F -0.116 7.116 29 C -0.164 4.164 30 H 0.065 0.935 31 H 0.199 0.801 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.250 0.750 39 H 0.339 0.661 40 H 0.113 0.887 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.653 -18.350 7.019 25.119 hybrid contribution -0.277 0.648 0.253 0.749 sum 15.376 -17.701 7.272 24.549 Atomic orbital electron populations 1.69886 1.07161 1.26508 1.60106 1.25476 0.96046 1.01161 1.03010 0.85433 0.78772 0.79777 0.77927 1.20730 1.22729 1.17318 1.19004 0.82644 0.93267 1.40543 0.92545 1.42783 1.02401 1.03922 1.90260 1.20356 0.91167 0.87005 0.94463 0.94152 1.22083 0.99159 0.97118 0.98470 1.21416 0.95571 0.96552 1.01004 1.21879 0.97227 1.02197 0.94660 1.21061 0.95823 0.86458 0.91562 0.88471 1.46036 1.12833 1.24856 1.50421 1.16922 0.86155 0.81124 0.79045 1.90911 1.13521 1.75057 1.61915 1.21775 0.91177 0.96604 1.01871 1.71041 1.11185 1.22876 1.17307 1.29845 0.91902 0.84342 0.91144 1.84426 1.15965 1.47915 1.57075 1.22996 0.90463 0.97365 1.04623 1.16444 0.82115 0.74936 0.75359 1.93275 1.82250 1.84010 1.54908 1.93263 1.96617 1.28763 1.95837 1.93424 1.83288 1.89597 1.45332 1.22052 0.95563 0.96696 1.02135 0.93520 0.80123 0.94528 0.91929 0.93020 0.91150 0.91667 0.89097 0.75045 0.66118 0.88689 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.45 13.97 21.65 0.30 -62.14 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.95 44.56 27.74 68.60 1.90 46.46 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.33 6.52 99.48 0.65 -9.69 16 7 C -0.22 -12.31 10.41 84.03 0.87 -11.43 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -33.01 4.93 -322.94 -1.59 -34.60 16 10 C 0.18 6.11 2.60 44.99 0.12 6.23 16 11 H 0.04 1.48 6.44 -2.39 -0.02 1.47 16 12 C -0.13 -4.05 5.50 30.59 0.17 -3.88 16 13 C -0.11 -2.69 5.77 30.59 0.18 -2.51 16 14 C -0.12 -2.70 5.60 30.59 0.17 -2.53 16 15 C 0.16 3.69 2.78 44.99 0.13 3.81 16 16 H 0.10 2.26 7.58 -2.39 -0.02 2.24 16 17 N -0.69 -17.45 4.23 -445.82 -1.89 -19.33 16 18 C 0.58 15.51 7.72 86.66 0.67 16.18 16 19 O -0.54 -15.97 12.82 -4.07 -0.05 -16.02 16 20 C 0.01 0.18 6.96 40.41 0.28 0.46 16 21 N -0.50 -9.99 11.06 -305.14 -3.37 -13.36 16 22 C 0.25 2.80 13.19 130.52 1.72 4.52 16 23 O -0.17 -2.55 10.72 0.38 0.00 -2.55 16 24 C -0.10 -2.01 6.75 25.19 0.17 -1.84 16 25 C 0.57 12.28 3.34 71.24 0.24 12.52 16 26 F -0.16 -3.64 17.30 44.97 0.78 -2.86 16 27 F -0.16 -3.19 17.30 44.97 0.78 -2.41 16 28 F -0.14 -3.44 13.49 44.97 0.61 -2.83 16 29 C -0.13 -3.35 5.08 30.60 0.16 -3.19 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.37 15.38 5.66 -92.71 -0.52 14.86 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.36 7.60 -2.39 -0.02 1.34 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 10.89 6.59 -92.71 -0.61 10.28 16 39 H 0.32 -0.71 8.06 -2.91 -0.02 -0.73 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.18 350.78 2.73 -70.45 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.08 Total: 24.18 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.34 Total: 15.01 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.55 Total: -129.44 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 2.16 Total: -8.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -73.18 2.73 -70.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981182257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.780 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds