Wall clock time and date at job start Wed Apr 1 2020 04:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47135 * 270.00433 * 3 2 1 5 5 H 1.48501 * 109.47006 * 30.00635 * 3 2 1 6 6 H 1.48495 * 109.46868 * 150.00274 * 3 2 1 7 7 C 1.38813 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99861 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00137 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47152 * 324.99935 * 10 9 7 12 12 C 1.53006 * 109.47363 * 85.00012 * 10 9 7 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00027 * 13 12 10 15 15 C 1.52996 * 109.46972 * 59.99860 * 14 13 12 16 16 H 1.09000 * 109.47054 * 60.00300 * 15 14 13 17 17 N 1.46500 * 109.46993 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99887 * 274.99908 * 17 15 14 19 19 O 1.21609 * 119.99739 * 0.02562 * 18 17 15 20 20 C 1.47424 * 119.99792 * 179.97438 * 18 17 15 21 21 C 1.36085 * 126.44799 * 179.70902 * 20 18 17 22 22 O 1.34257 * 106.95342 * 179.90590 * 21 20 18 23 23 C 1.34050 * 108.22297 * 0.36961 * 22 21 20 24 24 C 1.50700 * 125.37895 * 179.73216 * 23 22 21 25 25 F 1.39903 * 109.47176 * 270.03889 * 24 23 22 26 26 F 1.39897 * 109.47050 * 30.04073 * 24 23 22 27 27 F 1.39905 * 109.46969 * 150.04204 * 24 23 22 28 28 N 1.29937 * 109.24517 * 359.76545 * 23 22 21 29 29 C 1.52997 * 109.47165 * 300.00293 * 15 14 13 30 30 H 0.97001 * 120.00287 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99687 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46998 * 299.99569 * 12 10 9 33 33 H 1.09000 * 109.47050 * 59.99860 * 12 10 9 34 34 H 1.09000 * 109.47140 * 60.00051 * 13 12 10 35 35 H 1.09001 * 109.47230 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.46974 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.46550 * 300.00288 * 14 13 12 38 38 H 0.96999 * 120.00261 * 95.00272 * 17 15 14 39 39 H 1.08000 * 126.52473 * 0.04675 * 21 20 18 40 40 H 1.09000 * 109.47140 * 299.99954 * 29 15 14 41 41 H 1.09002 * 109.47045 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 -0.5900 12 6 2.4219 -4.0357 1.4365 13 6 3.1863 -5.3610 1.4365 14 6 2.3086 -6.4561 0.8271 15 6 1.9447 -6.0772 -0.6099 16 1 2.8554 -5.9714 -1.1994 17 7 1.1038 -7.1255 -1.1932 18 6 1.6725 -8.2082 -1.7597 19 8 2.8836 -8.3151 -1.7862 20 6 0.8262 -9.2633 -2.3462 21 6 1.2583 -10.4024 -2.9526 22 8 0.1650 -11.0798 -3.3377 23 6 -0.9149 -10.3691 -2.9834 24 6 -2.3453 -10.7709 -3.2358 25 9 -2.7580 -10.2719 -4.4759 26 9 -2.4440 -12.1664 -3.2384 27 9 -3.1616 -10.2474 -2.2274 28 7 -0.5337 -9.2786 -2.3885 29 6 1.1803 -4.7519 -0.6099 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 3.0469 -3.2554 1.8708 33 1 1.5112 -4.1419 2.0260 34 1 4.0970 -5.2552 0.8470 35 1 3.4460 -5.6307 2.4602 36 1 2.8531 -7.4003 0.8275 37 1 1.3980 -6.5618 1.4166 38 1 0.1378 -7.0403 -1.1718 39 1 2.2852 -10.7051 -3.0948 40 1 0.2696 -4.8577 -0.0203 41 1 0.9206 -4.4822 -1.6336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981198438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:21 Heat of formation + Delta-G solvation = -155.626687 kcal Electronic energy + Delta-G solvation = -29981.024830 eV Core-core repulsion = 25061.906641 eV Total energy + Delta-G solvation = -4919.118189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.91942 -48.45097 -48.40825 -44.32895 -40.06154 -38.03521 -35.79235 -34.77857 -33.36519 -32.07641 -31.14615 -29.50110 -27.85635 -27.41978 -24.96509 -23.71828 -22.88561 -22.06374 -21.60541 -20.55599 -19.92599 -19.40199 -19.27046 -19.02842 -17.93008 -17.47895 -17.16647 -16.81451 -16.29595 -15.24442 -15.22907 -15.13115 -14.92085 -14.79544 -14.55121 -14.51643 -14.50731 -14.39021 -13.98429 -13.82429 -13.57834 -13.50333 -13.16827 -12.75458 -12.29616 -12.17783 -12.07490 -11.77561 -11.02200 -10.99846 -10.89406 -10.75418 -10.62146 -10.38454 -10.25455 -10.16525 -10.07391 -9.79480 -9.64312 -9.11025 -8.87961 -6.97029 -5.77245 -3.06059 0.23001 0.90391 1.04657 2.01217 2.58968 2.84068 2.86459 3.43350 3.43651 3.48788 3.50192 3.50556 3.91659 4.12731 4.49113 4.57121 4.78539 4.90925 5.00854 5.07336 5.28024 5.47832 5.57000 5.65136 5.69389 5.83652 5.93719 5.98584 6.10275 6.21258 6.29112 6.35469 6.48119 6.51459 6.57706 6.70316 6.94684 7.10714 7.31546 7.70182 7.89644 8.41351 9.52547 10.09686 10.44346 11.45442 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002143 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.780518 B =13060.559139 C =14144.503680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.092 0.908 17 N -0.700 5.700 18 C 0.601 3.399 19 O -0.531 6.531 20 C -0.065 4.065 21 C 0.056 3.944 22 O -0.167 6.167 23 C 0.093 3.907 24 C 0.587 3.413 25 F -0.151 7.151 26 F -0.156 7.156 27 F -0.140 7.140 28 N -0.388 5.388 29 C -0.130 4.130 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.249 0.751 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -27.065 -5.719 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.074 3.926 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.110 0.890 17 N -0.349 5.349 18 C 0.385 3.615 19 O -0.407 6.407 20 C -0.188 4.188 21 C -0.019 4.019 22 O -0.051 6.051 23 C -0.117 4.117 24 C 0.531 3.469 25 F -0.133 7.133 26 F -0.137 7.137 27 F -0.121 7.121 28 N -0.120 5.120 29 C -0.169 4.169 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.245 0.755 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.442 -26.535 -5.530 27.144 hybrid contribution -0.114 0.426 -0.231 0.498 sum -1.556 -26.109 -5.761 26.783 Atomic orbital electron populations 1.69657 1.05104 1.25651 1.57751 1.24741 0.95512 0.97685 1.03054 0.86203 0.78668 0.83900 0.77511 1.21744 1.21811 1.20758 1.19238 0.91006 0.84042 1.42583 0.91140 1.42400 1.05773 0.99684 1.88599 1.20086 0.94055 0.85504 0.92970 0.93307 1.22305 0.99778 0.95223 1.00505 1.21482 0.98468 0.95313 1.00006 1.21890 1.00306 0.98924 0.95176 1.21169 0.94381 0.85885 0.94176 0.89039 1.46022 1.11431 1.20131 1.57337 1.16566 0.86145 0.80768 0.78025 1.90860 1.12666 1.78063 1.59158 1.22133 0.88845 0.99512 1.08270 1.25781 0.91512 0.90474 0.94117 1.84414 1.14115 1.44938 1.61604 1.25464 0.90337 0.90851 1.05027 1.15961 0.80310 0.75172 0.75420 1.93338 1.90640 1.87271 1.42007 1.93308 1.96262 1.27952 1.96176 1.93345 1.72560 1.86369 1.59815 1.70675 1.11558 1.17205 1.12534 1.22110 0.99457 0.93087 1.02274 0.93525 0.78294 0.91809 0.92601 0.92103 0.92403 0.92109 0.91867 0.75549 0.73554 0.91495 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.68 5.12 -53.42 -0.27 -17.95 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.37 5.50 -26.73 -0.15 -2.51 16 13 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.12 -1.61 5.49 -26.73 -0.15 -1.76 16 15 C 0.15 2.00 2.45 -67.93 -0.17 1.83 16 16 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 17 N -0.70 -8.47 5.07 -54.88 -0.28 -8.75 16 18 C 0.60 7.37 7.78 -12.52 -0.10 7.27 16 19 O -0.53 -7.66 16.55 5.27 0.09 -7.57 16 20 C -0.07 -0.66 6.99 -83.02 -0.58 -1.24 16 21 C 0.06 0.40 11.94 29.96 0.36 0.75 16 22 O -0.17 -1.28 10.70 6.51 0.07 -1.21 16 23 C 0.09 0.82 7.53 -13.08 -0.10 0.72 16 24 C 0.59 4.49 3.57 36.01 0.13 4.62 16 25 F -0.15 -1.19 17.30 2.25 0.04 -1.15 16 26 F -0.16 -1.10 17.28 2.25 0.04 -1.06 16 27 F -0.14 -1.17 17.23 2.25 0.04 -1.13 16 28 N -0.39 -4.02 10.96 -7.65 -0.08 -4.11 16 29 C -0.13 -2.03 4.86 -26.73 -0.13 -2.16 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.41 4.54 8.33 -40.82 -0.34 4.20 16 39 H 0.25 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -31.44 365.52 -5.45 -36.89 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.82 Total: 8.52 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.47 Total: 1.98 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.09 Total: -58.03 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.16 Total: -8.78 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.12 Total: -3.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.44 -5.45 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981198438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.734 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds