Wall clock time and date at job start Wed Apr 1 2020 04:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47135 * 270.00433 * 3 2 1 5 5 H 1.48501 * 109.47006 * 30.00635 * 3 2 1 6 6 H 1.48495 * 109.46868 * 150.00274 * 3 2 1 7 7 C 1.38813 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99861 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00137 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47152 * 324.99935 * 10 9 7 12 12 C 1.53006 * 109.47363 * 85.00012 * 10 9 7 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00027 * 13 12 10 15 15 C 1.52996 * 109.46972 * 59.99860 * 14 13 12 16 16 H 1.09000 * 109.47054 * 60.00300 * 15 14 13 17 17 N 1.46500 * 109.46993 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99887 * 274.99908 * 17 15 14 19 19 O 1.21609 * 119.99739 * 0.02562 * 18 17 15 20 20 C 1.47424 * 119.99792 * 179.97438 * 18 17 15 21 21 C 1.36085 * 126.44799 * 179.70902 * 20 18 17 22 22 O 1.34257 * 106.95342 * 179.90590 * 21 20 18 23 23 C 1.34050 * 108.22297 * 0.36961 * 22 21 20 24 24 C 1.50700 * 125.37895 * 179.73216 * 23 22 21 25 25 F 1.39903 * 109.47176 * 270.03889 * 24 23 22 26 26 F 1.39897 * 109.47050 * 30.04073 * 24 23 22 27 27 F 1.39905 * 109.46969 * 150.04204 * 24 23 22 28 28 N 1.29937 * 109.24517 * 359.76545 * 23 22 21 29 29 C 1.52997 * 109.47165 * 300.00293 * 15 14 13 30 30 H 0.97001 * 120.00287 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99687 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46998 * 299.99569 * 12 10 9 33 33 H 1.09000 * 109.47050 * 59.99860 * 12 10 9 34 34 H 1.09000 * 109.47140 * 60.00051 * 13 12 10 35 35 H 1.09001 * 109.47230 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.46974 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.46550 * 300.00288 * 14 13 12 38 38 H 0.96999 * 120.00261 * 95.00272 * 17 15 14 39 39 H 1.08000 * 126.52473 * 0.04675 * 21 20 18 40 40 H 1.09000 * 109.47140 * 299.99954 * 29 15 14 41 41 H 1.09002 * 109.47045 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 -0.5900 12 6 2.4219 -4.0357 1.4365 13 6 3.1863 -5.3610 1.4365 14 6 2.3086 -6.4561 0.8271 15 6 1.9447 -6.0772 -0.6099 16 1 2.8554 -5.9714 -1.1994 17 7 1.1038 -7.1255 -1.1932 18 6 1.6725 -8.2082 -1.7597 19 8 2.8836 -8.3151 -1.7862 20 6 0.8262 -9.2633 -2.3462 21 6 1.2583 -10.4024 -2.9526 22 8 0.1650 -11.0798 -3.3377 23 6 -0.9149 -10.3691 -2.9834 24 6 -2.3453 -10.7709 -3.2358 25 9 -2.7580 -10.2719 -4.4759 26 9 -2.4440 -12.1664 -3.2384 27 9 -3.1616 -10.2474 -2.2274 28 7 -0.5337 -9.2786 -2.3885 29 6 1.1803 -4.7519 -0.6099 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 3.0469 -3.2554 1.8708 33 1 1.5112 -4.1419 2.0260 34 1 4.0970 -5.2552 0.8470 35 1 3.4460 -5.6307 2.4602 36 1 2.8531 -7.4003 0.8275 37 1 1.3980 -6.5618 1.4166 38 1 0.1378 -7.0403 -1.1718 39 1 2.2852 -10.7051 -3.0948 40 1 0.2696 -4.8577 -0.0203 41 1 0.9206 -4.4822 -1.6336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981198438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:20 Heat of formation + Delta-G solvation = -178.744837 kcal Electronic energy + Delta-G solvation = -29982.027308 eV Core-core repulsion = 25061.906641 eV Total energy + Delta-G solvation = -4920.120667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.52791 -49.04157 -49.03476 -44.98963 -41.10303 -39.30458 -36.51063 -36.27914 -34.82520 -32.97167 -32.72563 -30.75454 -29.44384 -28.08808 -25.88884 -25.56624 -23.62171 -23.19881 -22.72247 -21.65613 -21.05629 -20.23623 -20.01412 -19.70460 -19.15931 -18.58602 -18.13135 -17.63738 -17.44874 -16.51151 -16.16135 -15.95023 -15.81442 -15.80331 -15.49470 -15.40246 -15.20880 -15.12785 -15.11763 -15.10945 -15.00170 -14.74060 -14.21148 -14.15539 -13.62464 -13.41460 -12.97961 -12.88775 -12.82723 -12.48285 -12.26934 -12.17042 -12.04637 -11.96956 -11.70943 -11.66027 -11.40041 -11.13834 -10.87155 -10.75657 -10.14850 -8.99517 -7.93196 -5.21183 -0.38969 0.27965 0.28531 1.37868 1.47829 1.48919 1.57226 1.86170 1.98171 2.04039 2.57066 2.84585 2.89810 3.16058 3.39297 3.40913 3.61865 3.84453 3.85543 4.03416 4.19168 4.27138 4.30893 4.34377 4.44149 4.52093 4.57429 4.65894 4.76141 5.00651 5.09717 5.16285 5.23058 5.34826 5.37036 5.51119 5.53642 5.65815 5.73349 6.29232 6.36622 6.94769 7.35507 8.11568 8.34639 9.30318 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002143 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.780518 B =13060.559139 C =14144.503680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.041 0.959 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.081 0.919 17 N -0.699 5.699 18 C 0.605 3.395 19 O -0.555 6.555 20 C -0.097 4.097 21 C 0.090 3.910 22 O -0.162 6.162 23 C 0.090 3.910 24 C 0.595 3.405 25 F -0.153 7.153 26 F -0.150 7.150 27 F -0.145 7.145 28 N -0.406 5.406 29 C -0.117 4.117 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.285 0.715 40 H 0.071 0.929 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 -29.013 -5.866 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.070 3.930 11 H 0.059 0.941 12 C -0.168 4.168 13 C -0.144 4.144 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.099 0.901 17 N -0.348 5.348 18 C 0.390 3.610 19 O -0.433 6.433 20 C -0.218 4.218 21 C 0.016 3.984 22 O -0.044 6.044 23 C -0.120 4.120 24 C 0.539 3.461 25 F -0.134 7.134 26 F -0.131 7.131 27 F -0.126 7.126 28 N -0.138 5.138 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.300 0.700 40 H 0.090 0.910 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.401 -28.529 -5.676 29.091 hybrid contribution -0.404 0.926 -0.222 1.035 sum -0.805 -27.602 -5.898 28.237 Atomic orbital electron populations 1.69807 1.06519 1.25927 1.59814 1.25516 0.96353 1.00935 1.04078 0.85198 0.77767 0.79829 0.77355 1.21567 1.22321 1.19476 1.19596 0.91363 0.85224 1.40554 0.90775 1.42599 1.05452 1.00892 1.88698 1.20306 0.93834 0.84542 0.94363 0.94120 1.22112 0.99638 0.96635 0.98436 1.21408 0.98105 0.93407 1.01444 1.21824 1.00512 0.98746 0.94438 1.20900 0.93685 0.85227 0.94785 0.90052 1.45903 1.11516 1.19936 1.57443 1.16723 0.86040 0.80831 0.77370 1.90843 1.13663 1.78670 1.60163 1.21892 0.88785 1.00392 1.10770 1.26475 0.92423 0.88704 0.90836 1.84461 1.14014 1.44644 1.61302 1.25550 0.90895 0.90661 1.04942 1.15812 0.79827 0.75289 0.75186 1.93336 1.90611 1.87347 1.42083 1.93319 1.96198 1.27474 1.96139 1.93335 1.72679 1.86499 1.60065 1.70598 1.11953 1.18049 1.13185 1.21894 0.99168 0.93201 1.01329 0.94116 0.79549 0.93855 0.93066 0.91809 0.90459 0.91284 0.91159 0.74964 0.69968 0.91044 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.24 -12.99 9.93 84.03 0.83 -12.15 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -36.59 5.12 -322.94 -1.65 -38.24 16 10 C 0.18 6.80 2.77 44.99 0.12 6.93 16 11 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 12 C -0.13 -4.34 5.50 30.60 0.17 -4.17 16 13 C -0.10 -2.71 5.92 30.59 0.18 -2.52 16 14 C -0.12 -2.79 5.49 30.59 0.17 -2.62 16 15 C 0.16 4.13 2.45 44.99 0.11 4.24 16 16 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 17 N -0.70 -16.14 5.07 -445.80 -2.26 -18.40 16 18 C 0.60 13.94 7.78 86.66 0.67 14.62 16 19 O -0.55 -15.09 16.55 -4.06 -0.07 -15.16 16 20 C -0.10 -1.78 6.99 40.41 0.28 -1.50 16 21 C 0.09 1.03 11.94 67.32 0.80 1.83 16 22 O -0.16 -2.07 10.70 0.38 0.00 -2.06 16 23 C 0.09 1.44 7.53 88.39 0.67 2.11 16 24 C 0.59 8.35 3.57 71.24 0.25 8.61 16 25 F -0.15 -2.24 17.30 44.97 0.78 -1.46 16 26 F -0.15 -1.88 17.28 44.97 0.78 -1.11 16 27 F -0.14 -2.29 17.23 44.97 0.78 -1.52 16 28 N -0.41 -7.89 10.96 -293.03 -3.21 -11.11 16 29 C -0.12 -3.63 4.86 30.59 0.15 -3.48 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 8.83 8.33 -92.71 -0.77 8.06 16 39 H 0.29 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.79 365.52 1.95 -65.84 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.38 Total: 26.00 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.88 Total: 7.95 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.85 Total: -126.74 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.06 Total: -17.22 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 2.33 Total: -4.08 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -67.79 1.95 -65.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981198438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.904 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds