Wall clock time and date at job start Wed Apr 1 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47167 * 299.99868 * 3 2 1 6 6 H 1.48499 * 109.47172 * 59.99942 * 3 2 1 7 7 C 1.38814 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00182 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.47147 * 325.00010 * 10 9 7 12 12 C 1.53005 * 109.47519 * 84.99807 * 10 9 7 13 13 C 1.53000 * 109.47187 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47366 * 300.00233 * 13 12 10 15 15 C 1.53002 * 109.47517 * 59.99718 * 14 13 12 16 16 H 1.08994 * 109.47548 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46473 * 60.00164 * 15 14 13 18 18 C 1.34776 * 120.00139 * 85.00222 * 17 15 14 19 19 O 1.21681 * 119.99680 * 359.97438 * 18 17 15 20 20 C 1.46720 * 120.00145 * 179.97438 * 18 17 15 21 21 O 1.35345 * 126.64096 * 0.02982 * 20 18 17 22 22 C 1.33667 * 107.68526 * 179.97438 * 21 20 18 23 23 N 1.30618 * 109.15114 * 359.97438 * 22 21 20 24 24 C 1.33693 * 108.99591 * 0.02562 * 23 22 21 25 25 C 1.50701 * 126.27144 * 180.02562 * 24 23 22 26 26 F 1.39895 * 109.47621 * 269.97151 * 25 24 23 27 27 F 1.39898 * 109.47144 * 29.97879 * 25 24 23 28 28 F 1.39903 * 109.46716 * 149.97283 * 25 24 23 29 29 C 1.53000 * 109.47033 * 300.00486 * 15 14 13 30 30 H 0.96997 * 119.99847 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99629 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46779 * 60.00294 * 12 10 9 33 33 H 1.08994 * 109.47189 * 300.00425 * 12 10 9 34 34 H 1.09002 * 109.47212 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.47003 * 60.00454 * 13 12 10 36 36 H 1.08998 * 109.47240 * 300.00075 * 14 13 12 37 37 H 1.09004 * 109.47457 * 180.02562 * 14 13 12 38 38 H 0.97005 * 119.99832 * 264.99728 * 17 15 14 39 39 H 1.07999 * 125.42870 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46734 * 179.97438 * 29 15 14 41 41 H 1.08998 * 109.47003 * 299.99201 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9689 -3.5505 -0.5900 12 6 2.4221 -4.0356 1.4365 13 6 3.1865 -5.3609 1.4364 14 6 2.3089 -6.4559 0.8270 15 6 1.9448 -6.0771 -0.6100 16 1 1.3200 -6.8574 -1.0443 17 7 3.1689 -5.9349 -1.4024 18 6 3.7349 -7.0191 -1.9686 19 8 3.2295 -8.1161 -1.8212 20 6 4.9604 -6.8766 -2.7626 21 8 5.6325 -5.7285 -3.0118 22 6 6.6898 -6.0335 -3.7706 23 7 6.6972 -7.3196 -3.9983 24 6 5.6433 -7.8750 -3.3915 25 6 5.2777 -9.3370 -3.4003 26 9 4.4398 -9.6017 -4.4888 27 9 6.4402 -10.1077 -3.5083 28 9 4.6137 -9.6587 -2.2116 29 6 1.1804 -4.7518 -0.6099 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 1.5114 -4.1419 2.0259 33 1 3.0470 -3.2553 1.8708 34 1 3.4454 -5.6311 2.4602 35 1 4.0972 -5.2551 0.8469 36 1 1.3982 -6.5618 1.4166 37 1 2.8533 -7.4003 0.8274 38 1 3.5719 -5.0604 -1.5195 39 1 7.4215 -5.3287 -4.1371 40 1 0.9215 -4.4817 -1.6338 41 1 0.2698 -4.8576 -0.0204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981241790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:22 Heat of formation + Delta-G solvation = -172.807287 kcal Electronic energy + Delta-G solvation = -31472.293135 eV Core-core repulsion = 26552.429939 eV Total energy + Delta-G solvation = -4919.863196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.25453 -48.80719 -48.70366 -44.90366 -41.34510 -39.33638 -36.68913 -36.14396 -34.57858 -32.99215 -32.55130 -30.92938 -29.53173 -27.97757 -25.71919 -25.28846 -23.79792 -23.26151 -22.59264 -22.28638 -20.35594 -20.21272 -19.71025 -19.43833 -19.19465 -18.91906 -18.17162 -17.21446 -16.88484 -16.86864 -16.32999 -16.00905 -15.75055 -15.71490 -15.53357 -15.27359 -15.17103 -15.10570 -15.04728 -14.87874 -14.78950 -14.75958 -13.91839 -13.62245 -13.55427 -13.12897 -13.05476 -13.04356 -12.88654 -12.81566 -12.30374 -12.20895 -12.01458 -11.94925 -11.62530 -11.54702 -11.42245 -11.01730 -10.85277 -10.72146 -10.19177 -8.97031 -7.91417 -5.19076 -0.76912 0.88029 0.96342 1.37962 1.49336 1.50093 1.59195 1.64572 1.90478 2.33626 2.58128 2.65099 3.17074 3.28447 3.42619 3.51954 3.64035 3.76350 3.86867 3.91105 4.03228 4.28951 4.29375 4.34941 4.55390 4.65521 4.71151 4.77385 4.80914 4.87493 5.09216 5.16960 5.23821 5.31933 5.38779 5.52466 5.56356 5.65459 5.95861 6.22150 6.31189 6.76118 7.37573 8.14360 8.35948 9.32245 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.002812 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.111322 B = 9953.738600 C =10927.746426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.299 1.299 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.175 3.825 11 H 0.046 0.954 12 C -0.128 4.128 13 C -0.106 4.106 14 C -0.123 4.123 15 C 0.158 3.842 16 H 0.096 0.904 17 N -0.690 5.690 18 C 0.594 3.406 19 O -0.518 6.518 20 C -0.036 4.036 21 O -0.170 6.170 22 C 0.251 3.749 23 N -0.493 5.493 24 C -0.041 4.041 25 C 0.549 3.451 26 F -0.172 7.172 27 F -0.168 7.168 28 F -0.147 7.147 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.413 0.587 39 H 0.325 0.675 40 H 0.065 0.935 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.556 -16.299 -5.784 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.226 1.226 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.067 3.933 11 H 0.063 0.937 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.162 4.162 15 C 0.054 3.946 16 H 0.114 0.886 17 N -0.341 5.341 18 C 0.377 3.623 19 O -0.396 6.396 20 C -0.096 4.096 21 O -0.055 6.055 22 C 0.026 3.974 23 N -0.219 5.219 24 C -0.166 4.166 25 C 0.494 3.506 26 F -0.153 7.153 27 F -0.149 7.149 28 F -0.128 7.128 29 C -0.161 4.161 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.339 0.661 40 H 0.083 0.917 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.770 -17.239 -6.020 22.870 hybrid contribution -0.441 1.746 0.296 1.825 sum 13.329 -15.493 -5.724 21.224 Atomic orbital electron populations 1.69813 1.06576 1.25753 1.59980 1.25490 0.96257 1.00890 1.04251 0.85174 0.78493 0.80365 0.76366 1.18757 1.22395 1.22639 1.19633 0.91431 0.85119 1.40153 0.90429 1.42641 1.05485 1.00943 1.88570 1.20394 0.94028 0.84725 0.94136 0.93652 1.22117 0.99564 0.96364 0.98796 1.21425 0.98123 0.93846 1.01056 1.21886 1.01293 0.98412 0.94567 1.21052 0.84282 0.97767 0.91494 0.88607 1.46078 1.27655 1.09870 1.50511 1.16440 0.81401 0.85407 0.79029 1.91002 1.61775 1.25507 1.61296 1.22894 0.97738 0.84278 1.04642 1.84676 1.33767 1.32730 1.54352 1.29879 0.87754 0.92404 0.87349 1.70217 1.19655 1.09069 1.22927 1.21627 0.96732 0.94898 1.03330 1.16852 0.74800 0.84144 0.74828 1.93226 1.72223 1.94618 1.55252 1.93222 1.48747 1.77112 1.95817 1.93382 1.80408 1.93270 1.45760 1.21995 0.99166 0.93116 1.01835 0.94245 0.79594 0.93173 0.94068 0.91269 0.92242 0.89667 0.91408 0.74951 0.66067 0.91651 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 44.15 29.55 68.60 2.03 46.17 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.23 -11.94 9.93 84.03 0.83 -11.10 16 8 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -33.90 5.12 -322.94 -1.65 -35.55 16 10 C 0.18 5.89 2.60 45.00 0.12 6.01 16 11 H 0.05 1.49 6.45 -2.38 -0.02 1.47 16 12 C -0.13 -3.95 5.50 30.60 0.17 -3.78 16 13 C -0.11 -2.49 5.77 30.59 0.18 -2.31 16 14 C -0.12 -2.68 5.60 30.59 0.17 -2.51 16 15 C 0.16 3.64 2.78 44.99 0.13 3.77 16 16 H 0.10 2.22 7.57 -2.39 -0.02 2.20 16 17 N -0.69 -15.35 4.23 -446.46 -1.89 -17.24 16 18 C 0.59 14.43 7.70 86.46 0.67 15.10 16 19 O -0.52 -15.01 12.79 -4.29 -0.05 -15.07 16 20 C -0.04 -0.78 7.14 24.04 0.17 -0.61 16 21 O -0.17 -2.66 10.57 -7.12 -0.08 -2.73 16 22 C 0.25 2.58 13.21 130.42 1.72 4.31 16 23 N -0.49 -9.24 11.21 -303.13 -3.40 -12.64 16 24 C -0.04 -0.95 6.49 41.83 0.27 -0.67 16 25 C 0.55 13.75 3.34 71.24 0.24 13.98 16 26 F -0.17 -4.45 17.30 44.97 0.78 -3.67 16 27 F -0.17 -4.08 17.27 44.97 0.78 -3.31 16 28 F -0.15 -4.03 13.47 44.97 0.61 -3.43 16 29 C -0.12 -3.37 5.07 30.59 0.16 -3.21 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.37 18.73 7.80 -92.70 -0.72 18.01 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.34 7.60 -2.39 -0.02 1.33 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 8.74 6.66 -92.70 -0.62 8.12 16 39 H 0.33 -1.06 8.06 -2.91 -0.02 -1.08 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.05 353.81 2.46 -66.59 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.22 Total: 22.69 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.28 Total: 15.23 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.66 Total: -122.49 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.13 Total: -17.80 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 2.16 Total: -10.40 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.05 2.46 -66.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981241790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.216 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds