Wall clock time and date at job start Wed Apr 1 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30014 * 127.33888 * 2 1 4 4 O 1.20654 * 112.30362 * 180.02562 * 3 2 1 5 5 C 1.33486 * 113.15832 * 359.75474 * 4 3 2 6 6 C 1.50700 * 126.83161 * 180.30583 * 5 4 3 7 7 F 1.39907 * 109.47076 * 238.05689 * 6 5 4 8 8 F 1.39899 * 109.47279 * 358.05393 * 6 5 4 9 9 F 1.39898 * 109.47540 * 118.05646 * 6 5 4 10 10 C 1.37359 * 106.34258 * 0.39006 * 5 4 3 11 11 C 1.47395 * 128.56704 * 179.90660 * 10 5 4 12 12 O 1.21609 * 120.00720 * 274.53324 * 11 10 5 13 13 N 1.34780 * 119.99721 * 94.53612 * 11 10 5 14 14 C 1.48217 * 119.97134 * 354.93868 * 13 11 10 15 15 C 1.47139 * 110.34297 * 102.50783 * 14 13 11 16 16 C 1.53241 * 111.81316 * 58.22640 * 15 14 13 17 17 N 1.43465 * 108.26480 * 281.67937 * 16 15 14 18 18 C 1.36942 * 118.93589 * 273.77711 * 17 16 15 19 19 H 1.07993 * 120.00152 * 30.78449 * 18 17 16 20 20 C 1.38809 * 119.99786 * 210.77537 * 18 17 16 21 21 N 1.31627 * 120.00181 * 26.42387 * 20 18 17 22 22 Si 1.86804 * 120.00274 * 206.41928 * 20 18 17 23 23 H 1.48495 * 109.47134 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.46795 * 60.00207 * 22 20 18 25 25 H 1.48500 * 109.46868 * 300.00587 * 22 20 18 26 26 C 1.48856 * 122.12223 * 93.50295 * 17 16 15 27 27 C 1.43624 * 119.97137 * 174.95969 * 13 11 10 28 28 H 1.09003 * 109.46906 * 269.99439 * 1 2 3 29 29 H 1.08998 * 109.47423 * 29.98902 * 1 2 3 30 30 H 1.08999 * 109.47249 * 150.00048 * 1 2 3 31 31 H 1.08997 * 109.32300 * 222.77623 * 14 13 11 32 32 H 1.08997 * 109.32085 * 342.41922 * 14 13 11 33 33 H 1.09003 * 109.00659 * 178.90223 * 15 14 13 34 34 H 1.08999 * 109.00848 * 297.76557 * 15 14 13 35 35 H 1.08999 * 109.49264 * 162.04157 * 16 15 14 36 36 H 1.09001 * 109.73891 * 41.45862 * 16 15 14 37 37 H 0.96998 * 119.99629 * 5.41178 * 21 20 18 38 38 H 1.08998 * 109.48028 * 80.87611 * 26 17 16 39 39 H 1.08998 * 109.48064 * 200.91333 * 26 17 16 40 40 H 1.09004 * 108.87096 * 149.86514 * 27 13 11 41 41 H 1.08999 * 108.87347 * 31.42768 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0043 6 6 4.9712 -1.3246 0.0116 7 9 5.0492 -2.1642 -1.1048 8 9 6.0136 -0.3926 -0.0321 9 9 5.0778 -2.0891 1.1784 10 6 2.3992 -1.1697 -0.0006 11 6 2.0401 -2.5992 -0.0002 12 8 1.9775 -3.2108 -1.0495 13 7 1.7810 -3.2286 1.1631 14 6 1.9661 -2.5144 2.4486 15 6 0.6657 -2.0853 2.9871 16 6 -0.2814 -3.2709 3.2005 17 7 -0.8303 -3.6425 1.9282 18 6 -1.9519 -2.9992 1.4770 19 1 -2.1321 -1.9707 1.7526 20 6 -2.8570 -3.6691 0.6653 21 7 -2.9590 -4.9795 0.7351 22 14 -3.9303 -2.7108 -0.5260 23 1 -4.8048 -3.6517 -1.2711 24 1 -3.0690 -1.9714 -1.4833 25 1 -4.7707 -1.7476 0.2298 26 6 -0.2166 -4.7007 1.0800 27 6 1.3264 -4.5909 1.1560 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3634 -0.8900 -0.5138 31 1 2.4512 -3.1787 3.1637 32 1 2.5937 -1.6380 2.2871 33 1 0.8252 -1.5807 3.9401 34 1 0.2052 -1.3867 2.2885 35 1 -1.0844 -2.9777 3.8768 36 1 0.2696 -4.1108 3.6236 37 1 -2.4600 -5.4697 1.4070 38 1 -0.5293 -5.6812 1.4390 39 1 -0.5397 -4.5715 0.0471 40 1 1.6705 -5.0822 2.0662 41 1 1.7590 -5.1026 0.2963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982043094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:28 Heat of formation + Delta-G solvation = -99.614292 kcal Electronic energy + Delta-G solvation = -33598.492183 eV Core-core repulsion = 28681.802874 eV Total energy + Delta-G solvation = -4916.689309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.56112 -49.07687 -49.04072 -46.48410 -41.43273 -38.86053 -36.43746 -36.02198 -34.42238 -34.11151 -32.76285 -30.18366 -29.61939 -28.04905 -27.01129 -26.30192 -25.15507 -23.53096 -22.44481 -21.59578 -20.90990 -20.14229 -19.74484 -19.65001 -19.25192 -19.04966 -18.48293 -17.76859 -17.30348 -16.36297 -16.10122 -15.98961 -15.86503 -15.81099 -15.51887 -15.43117 -15.16187 -15.14368 -15.07231 -14.95527 -14.70266 -14.49637 -14.32308 -14.22873 -13.99633 -13.72867 -13.57918 -12.96743 -12.77868 -12.71590 -12.48282 -12.12249 -12.04243 -11.98975 -11.87519 -11.62391 -11.37192 -11.23875 -11.13979 -10.35160 -9.83429 -8.81812 -8.14020 -5.35553 -0.62048 0.38717 0.40624 1.00276 1.54729 1.60954 1.62120 1.77750 1.78614 2.16966 2.57617 2.66557 2.84495 2.85257 3.04252 3.24223 3.33029 3.47670 3.60462 3.83554 4.08858 4.12631 4.15648 4.32943 4.40165 4.46870 4.50591 4.62685 4.67137 4.82697 4.87539 4.95750 5.02359 5.16855 5.18157 5.39898 5.59436 5.98395 6.10201 6.48192 6.58381 6.79843 7.20065 7.85221 8.29848 9.07776 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.004595 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.190997 B = 6092.085547 C = 6660.989842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.329 5.329 4 O 0.149 5.851 5 C -0.097 4.097 6 C 0.573 3.427 7 F -0.157 7.157 8 F -0.148 7.148 9 F -0.148 7.148 10 C -0.164 4.164 11 C 0.584 3.416 12 O -0.557 6.557 13 N -0.565 5.565 14 C 0.119 3.881 15 C -0.164 4.164 16 C 0.159 3.841 17 N -0.603 5.603 18 C -0.342 4.342 19 H 0.051 0.949 20 C -0.067 4.067 21 N -0.943 5.943 22 Si 1.089 2.911 23 H -0.300 1.300 24 H -0.285 1.285 25 H -0.271 1.271 26 C 0.152 3.848 27 C 0.106 3.894 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.256 0.744 38 H 0.023 0.977 39 H 0.020 0.980 40 H 0.104 0.896 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.792 9.246 4.592 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.028 5.028 4 O 0.079 5.921 5 C -0.163 4.163 6 C 0.517 3.483 7 F -0.138 7.138 8 F -0.129 7.129 9 F -0.129 7.129 10 C -0.171 4.171 11 C 0.369 3.631 12 O -0.436 6.436 13 N -0.294 5.294 14 C -0.002 4.002 15 C -0.205 4.205 16 C 0.032 3.968 17 N -0.327 5.327 18 C -0.472 4.472 19 H 0.069 0.931 20 C -0.265 4.265 21 N -0.585 5.585 22 Si 0.915 3.085 23 H -0.226 1.226 24 H -0.211 1.211 25 H -0.196 1.196 26 C 0.026 3.974 27 C -0.019 4.019 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.122 0.878 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.429 10.056 2.908 18.645 hybrid contribution 0.667 -0.990 0.871 1.478 sum 16.097 9.065 3.778 18.856 Atomic orbital electron populations 1.20368 0.83288 1.04640 1.05134 1.25010 0.99494 0.84937 1.00055 1.73622 0.88790 1.22385 1.18045 1.84645 1.21546 1.19418 1.66498 1.24212 0.95002 0.86745 1.10363 1.16300 0.80199 0.76788 0.75019 1.93344 1.96101 1.71886 1.52483 1.93305 1.58983 1.64580 1.96041 1.93313 1.95928 1.75897 1.47765 1.22133 0.92355 0.96147 1.06512 1.17090 0.77616 0.84122 0.84276 1.90833 1.53717 1.66614 1.32404 1.47405 1.62336 1.13613 1.06020 1.21062 0.98006 0.97507 0.83601 1.21696 0.96355 1.00640 1.01766 1.20341 0.94924 0.95060 0.86486 1.43841 1.28609 1.43474 1.16762 1.19943 0.99914 0.94911 1.32423 0.93130 1.26749 0.98921 0.97145 1.03674 1.70905 1.41361 1.08597 1.37614 0.83209 0.75227 0.74423 0.75613 1.22628 1.21116 1.19625 1.21780 0.90743 0.91136 0.93756 1.21699 0.94745 0.81738 1.03704 0.88176 0.87671 0.91296 0.87480 0.90353 0.88689 0.93070 0.94434 0.92895 0.93358 0.95883 0.96164 0.87838 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.23 10.17 71.24 0.72 -1.50 16 2 C 0.07 1.89 7.59 45.16 0.34 2.23 16 3 N -0.33 -8.77 12.01 -44.78 -0.54 -9.30 16 4 O 0.15 3.62 10.96 77.05 0.84 4.47 16 5 C -0.10 -2.44 6.55 25.48 0.17 -2.27 16 6 C 0.57 12.55 3.39 71.24 0.24 12.79 16 7 F -0.16 -4.00 17.30 44.97 0.78 -3.23 16 8 F -0.15 -2.79 17.22 44.97 0.77 -2.02 16 9 F -0.15 -3.02 17.30 44.97 0.78 -2.24 16 10 C -0.16 -4.96 4.33 -18.74 -0.08 -5.04 16 11 C 0.58 20.84 7.47 86.65 0.65 21.49 16 12 O -0.56 -24.32 16.62 -4.06 -0.07 -24.39 16 13 N -0.56 -17.93 2.46 -835.12 -2.05 -19.98 16 14 C 0.12 2.87 5.53 84.23 0.47 3.33 16 15 C -0.16 -4.45 5.63 28.85 0.16 -4.29 16 16 C 0.16 5.44 5.59 87.02 0.49 5.93 16 17 N -0.60 -26.57 2.34 -699.19 -1.63 -28.20 16 18 C -0.34 -17.34 9.06 84.03 0.76 -16.58 16 19 H 0.05 2.55 7.96 -2.91 -0.02 2.53 16 20 C -0.07 -3.66 4.61 84.86 0.39 -3.27 16 21 N -0.94 -55.93 12.80 21.65 0.28 -55.65 16 22 Si 1.09 50.11 29.99 68.60 2.06 52.17 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 C 0.15 6.70 5.14 86.56 0.44 7.15 16 27 C 0.11 3.58 5.29 87.55 0.46 4.04 16 28 H 0.10 2.80 6.64 -2.39 -0.02 2.79 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 31 H 0.11 1.98 8.05 -2.39 -0.02 1.96 16 32 H 0.08 1.71 6.41 -2.39 -0.02 1.69 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.63 6.02 -2.39 -0.01 1.62 16 35 H 0.04 1.38 8.02 -2.39 -0.02 1.36 16 36 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 37 H 0.26 15.28 6.56 -92.71 -0.61 14.67 16 38 H 0.02 1.08 7.15 -2.39 -0.02 1.06 16 39 H 0.02 1.06 7.24 -2.39 -0.02 1.05 16 40 H 0.10 2.76 7.73 -2.39 -0.02 2.74 16 41 H 0.07 2.60 7.30 -2.39 -0.02 2.58 16 Total: -1.00 -65.83 351.77 7.69 -58.14 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.26 Total: 6.24 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 5.22 Total: 24.01 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.95 Total: -113.14 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.78 Total: -19.93 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 2.33 Total: -7.48 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.06 Total: 52.17 kcal Total: -65.83 7.69 -58.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982043094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.478 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds