Wall clock time and date at job start Wed Apr 1 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.89073 * 2 1 4 4 C 1.55129 * 111.19076 * 236.06736 * 2 1 3 5 5 N 1.47435 * 104.72099 * 279.19361 * 4 2 1 6 6 C 1.34777 * 125.64473 * 155.82081 * 5 4 2 7 7 O 1.21613 * 120.00252 * 359.71473 * 6 5 4 8 8 C 1.47418 * 119.99684 * 179.44281 * 6 5 4 9 9 N 1.36068 * 126.45043 * 0.29260 * 8 6 5 10 10 C 1.29929 * 108.48118 * 180.02562 * 9 8 6 11 11 O 1.34055 * 109.23981 * 0.02562 * 10 9 8 12 12 C 1.34251 * 108.22658 * 359.73092 * 11 10 9 13 13 C 1.50702 * 126.52340 * 180.26607 * 12 11 10 14 14 F 1.39900 * 109.47400 * 270.18434 * 13 12 11 15 15 F 1.39897 * 109.47582 * 30.19151 * 13 12 11 16 16 F 1.39909 * 109.47008 * 150.18823 * 13 12 11 17 17 C 1.47017 * 108.70127 * 335.55384 * 5 4 2 18 18 C 1.54326 * 107.27641 * 1.28424 * 17 5 4 19 19 H 1.09003 * 110.72057 * 140.55363 * 18 17 5 20 20 N 1.46491 * 110.72298 * 263.83031 * 18 17 5 21 21 C 1.36938 * 120.00273 * 273.54659 * 20 18 17 22 22 H 1.08002 * 119.99701 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99882 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00638 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99560 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47517 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47439 * 120.00212 * 25 23 21 28 28 H 1.48508 * 109.46955 * 239.99901 * 25 23 21 29 29 H 1.08999 * 109.46949 * 296.12405 * 1 2 3 30 30 H 1.08997 * 109.46694 * 56.11730 * 1 2 3 31 31 H 1.08997 * 109.47716 * 176.12069 * 1 2 3 32 32 H 1.08999 * 109.47193 * 183.87674 * 3 2 1 33 33 H 1.09002 * 109.46813 * 303.88123 * 3 2 1 34 34 H 1.09004 * 109.47020 * 63.87788 * 3 2 1 35 35 H 1.08999 * 110.49618 * 160.35376 * 4 2 1 36 36 H 1.08994 * 110.34774 * 37.95554 * 4 2 1 37 37 H 1.07995 * 125.38518 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.88390 * 120.70929 * 17 5 4 39 39 H 1.09009 * 109.88166 * 241.71319 * 17 5 4 40 40 H 0.97007 * 119.99850 * 93.54585 * 20 18 17 41 41 H 0.96994 * 120.00747 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0137 -2.2163 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 1.9419 -3.1244 -2.7985 8 6 1.8862 -4.6441 -1.0286 9 7 1.8838 -4.9724 0.2919 10 6 1.8220 -6.2661 0.3946 11 8 1.7838 -6.8053 -0.8322 12 6 1.8174 -5.8081 -1.7304 13 6 1.7878 -5.9507 -3.2303 14 9 3.0958 -6.0614 -3.7142 15 9 1.0642 -7.0971 -3.5758 16 9 1.1759 -4.8257 -3.7938 17 6 2.0284 -2.2644 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4523 -0.6784 2.0799 20 7 3.4666 -0.4152 1.4964 21 6 4.0065 -0.6797 2.7268 22 1 3.4144 -1.1772 3.4806 23 6 5.3144 -0.3074 3.0053 24 7 6.0359 0.2993 2.0868 25 14 6.0506 -0.6677 4.6839 26 1 5.0409 -1.3520 5.5309 27 1 7.2397 -1.5430 4.5255 28 1 6.4565 0.6063 5.3302 29 1 -0.3633 0.4525 0.9227 30 1 -0.3632 0.5729 -0.8531 31 1 -0.3634 -1.0252 -0.0695 32 1 3.1630 1.4033 -0.0695 33 1 1.6698 1.9731 -0.8532 34 1 1.7824 1.9302 0.9227 35 1 3.1252 -0.5272 -1.3985 36 1 1.4764 -0.6458 -2.0858 37 1 1.8051 -6.8198 1.3217 38 1 1.1217 -2.7476 1.0610 39 1 2.9047 -2.8137 1.0411 40 1 3.9983 0.0320 0.8194 41 1 6.9499 0.5592 2.2813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995978436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:05 Heat of formation + Delta-G solvation = -147.689908 kcal Electronic energy + Delta-G solvation = -32152.175310 eV Core-core repulsion = 27233.401286 eV Total energy + Delta-G solvation = -4918.774024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.40768 -48.95791 -48.85238 -44.85866 -41.36943 -39.38912 -36.36247 -35.72471 -34.53691 -32.83663 -32.58467 -29.47362 -28.65897 -27.99988 -27.03938 -25.78200 -24.86642 -23.49325 -22.98022 -21.29486 -20.32008 -19.89044 -19.76335 -19.48470 -19.08798 -18.44133 -18.07151 -17.49343 -17.07053 -16.56833 -16.35051 -15.88277 -15.76683 -15.70130 -15.48161 -15.31783 -15.28701 -15.06128 -14.98755 -14.85935 -14.56824 -14.28649 -13.91811 -13.77019 -13.47524 -13.23773 -13.05505 -12.86037 -12.81203 -12.75558 -12.63038 -12.17319 -12.11437 -11.99818 -11.78921 -11.45838 -11.43217 -11.21961 -10.90452 -10.81422 -9.71299 -8.98618 -7.90160 -5.18129 -0.68767 0.45603 0.81880 1.50180 1.51078 1.60326 1.63261 1.73869 1.91197 2.42790 2.59138 2.74927 2.95715 2.99474 3.24627 3.41655 3.51134 3.77145 3.81489 3.91063 4.05743 4.12331 4.32631 4.49749 4.58100 4.69078 4.79451 4.80595 4.90607 5.00618 5.02848 5.09309 5.12491 5.23195 5.36166 5.40900 5.56898 5.61906 6.02928 6.30990 6.32704 6.80165 7.38855 8.12493 8.35916 9.33407 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.003627 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.786099 B = 7717.267839 C = 8855.659540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.119 4.119 4 C 0.119 3.881 5 N -0.583 5.583 6 C 0.585 3.415 7 O -0.549 6.549 8 C 0.014 3.986 9 N -0.488 5.488 10 C 0.251 3.749 11 O -0.166 6.166 12 C -0.097 4.097 13 C 0.567 3.433 14 F -0.166 7.166 15 F -0.161 7.161 16 F -0.137 7.137 17 C 0.101 3.899 18 C 0.168 3.832 19 H 0.079 0.921 20 N -0.723 5.723 21 C -0.231 4.231 22 H 0.082 0.918 23 C -0.072 4.072 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.261 1.261 27 H -0.301 1.301 28 H -0.298 1.298 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.327 0.673 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.375 0.625 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 -12.743 -5.337 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.177 4.177 4 C -0.002 4.002 5 N -0.313 5.313 6 C 0.372 3.628 7 O -0.428 6.428 8 C -0.108 4.108 9 N -0.216 5.216 10 C 0.025 3.975 11 O -0.053 6.053 12 C -0.155 4.155 13 C 0.512 3.488 14 F -0.147 7.147 15 F -0.142 7.142 16 F -0.118 7.118 17 C -0.024 4.024 18 C 0.057 3.943 19 H 0.097 0.903 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.186 1.186 27 H -0.229 1.229 28 H -0.225 1.225 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.341 0.659 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.209 0.791 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.394 -12.356 -5.333 19.705 hybrid contribution 1.351 -0.497 -0.042 1.440 sum -13.043 -12.853 -5.375 19.085 Atomic orbital electron populations 1.21634 0.91122 1.01983 1.03198 1.22027 0.97233 0.95288 0.93235 1.21504 1.00127 0.93876 1.02164 1.22448 1.00502 0.78906 0.98390 1.48245 1.68502 1.05979 1.08539 1.16698 0.78229 0.82541 0.85341 1.90888 1.52708 1.85548 1.13685 1.21571 1.04735 0.94323 0.90201 1.71175 1.19103 1.15383 1.15934 1.29926 0.91630 0.88095 0.87839 1.84408 1.68624 1.35307 1.16923 1.22918 1.13398 0.87651 0.91560 1.16430 0.74852 0.74941 0.82574 1.93270 1.36803 1.95738 1.88869 1.93260 1.77687 1.50146 1.93088 1.93423 1.82630 1.50526 1.85177 1.23030 1.01620 1.00495 0.77247 1.21537 0.86449 0.90427 0.95859 0.90322 1.42612 1.10027 1.69931 1.13663 1.19655 0.95337 1.29882 0.91382 0.90052 1.25448 0.97707 1.02287 1.00990 1.69815 1.09391 1.47855 1.35020 0.85180 0.78128 0.76715 0.80384 1.18556 1.22887 1.22535 0.90978 0.90915 0.92949 0.94322 0.90865 0.92259 0.93000 0.89563 0.65921 0.90074 0.92616 0.79133 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.58 71.98 0.62 -2.17 16 2 C -0.08 -2.26 0.83 -50.71 -0.04 -2.30 16 3 C -0.12 -3.60 8.22 71.98 0.59 -3.00 16 4 C 0.12 3.91 5.82 86.93 0.51 4.42 16 5 N -0.58 -20.01 3.31 -815.19 -2.70 -22.71 16 6 C 0.59 20.59 7.79 86.66 0.68 21.27 16 7 O -0.55 -21.11 13.41 -4.07 -0.05 -21.17 16 8 C 0.01 0.40 6.79 40.41 0.27 0.68 16 9 N -0.49 -12.24 8.83 -305.16 -2.70 -14.93 16 10 C 0.25 3.69 13.19 130.52 1.72 5.42 16 11 O -0.17 -3.17 10.72 0.39 0.00 -3.16 16 12 C -0.10 -2.51 6.75 25.19 0.17 -2.34 16 13 C 0.57 14.97 3.34 71.24 0.24 15.21 16 14 F -0.17 -4.60 17.30 44.97 0.78 -3.82 16 15 F -0.16 -3.66 17.30 44.97 0.78 -2.88 16 16 F -0.14 -4.16 13.49 44.97 0.61 -3.55 16 17 C 0.10 3.45 4.95 86.73 0.43 3.88 16 18 C 0.17 5.98 2.86 46.19 0.13 6.11 16 19 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 20 N -0.72 -33.56 4.61 -317.33 -1.46 -35.03 16 21 C -0.23 -11.91 9.98 84.03 0.84 -11.07 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 25 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.22 7.91 -2.39 -0.02 1.20 16 32 H 0.04 1.41 6.38 -2.39 -0.02 1.40 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 36 H 0.09 2.61 7.95 -2.39 -0.02 2.59 16 37 H 0.33 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.08 2.45 7.64 -2.39 -0.02 2.43 16 39 H 0.06 2.25 7.64 -2.38 -0.02 2.23 16 40 H 0.37 19.16 6.10 -92.70 -0.57 18.60 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -70.04 353.93 4.72 -65.32 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.53 Total: 20.31 kcal Atomic # 6 Polarization: 25.98 SS G_CDS: 6.62 Total: 32.60 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.58 Total: -130.21 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 2.16 Total: -10.25 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.04 4.72 -65.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995978436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.366 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds