Wall clock time and date at job start Wed Apr 1 2020 04:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.89019 * 2 1 4 4 C 1.55129 * 111.18798 * 236.06975 * 2 1 3 5 5 N 1.47430 * 104.72418 * 279.19244 * 4 2 1 6 6 C 1.34773 * 125.65196 * 155.82050 * 5 4 2 7 7 O 1.21613 * 119.99881 * 359.71464 * 6 5 4 8 8 C 1.47396 * 119.99991 * 179.44268 * 6 5 4 9 9 C 1.37358 * 128.56502 * 0.29595 * 8 6 5 10 10 O 1.33501 * 106.33924 * 180.02562 * 9 8 6 11 11 N 1.20653 * 113.15511 * 359.97438 * 10 9 8 12 12 C 1.30012 * 112.30231 * 359.69305 * 11 10 9 13 13 C 1.50703 * 127.33126 * 180.31668 * 12 11 10 14 14 F 1.39899 * 109.47389 * 270.16597 * 13 12 11 15 15 F 1.39895 * 109.47340 * 30.17338 * 13 12 11 16 16 F 1.39902 * 109.46809 * 150.16807 * 13 12 11 17 17 C 1.47027 * 108.69819 * 335.55342 * 5 4 2 18 18 C 1.54324 * 107.27233 * 1.28428 * 17 5 4 19 19 H 1.09006 * 110.71314 * 140.73141 * 18 17 5 20 20 N 1.46491 * 110.72258 * 263.82893 * 18 17 5 21 21 C 1.36938 * 120.00273 * 273.55047 * 20 18 17 22 22 H 1.08002 * 119.99701 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00280 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99948 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99937 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47256 * 90.00035 * 25 23 21 27 27 H 1.48499 * 109.47222 * 210.00121 * 25 23 21 28 28 H 1.48494 * 109.47132 * 330.00208 * 25 23 21 29 29 H 1.09006 * 109.46491 * 296.11874 * 1 2 3 30 30 H 1.08997 * 109.47031 * 56.11532 * 1 2 3 31 31 H 1.08997 * 109.47687 * 176.12060 * 1 2 3 32 32 H 1.09000 * 109.47257 * 183.88624 * 3 2 1 33 33 H 1.09002 * 109.46813 * 303.88520 * 3 2 1 34 34 H 1.09004 * 109.47020 * 63.88184 * 3 2 1 35 35 H 1.08999 * 110.49618 * 160.35106 * 4 2 1 36 36 H 1.08994 * 110.34774 * 37.95284 * 4 2 1 37 37 H 1.07998 * 126.83096 * 0.02562 * 9 8 6 38 38 H 1.09000 * 109.87929 * 120.70863 * 17 5 4 39 39 H 1.09004 * 109.88144 * 241.87171 * 17 5 4 40 40 H 0.97000 * 120.00221 * 93.55107 * 20 18 17 41 41 H 0.97005 * 119.99961 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0137 -2.2162 -0.7726 6 6 1.9469 -3.2835 -1.5929 7 8 1.9417 -3.1244 -2.7986 8 6 1.8861 -4.6439 -1.0288 9 6 1.8813 -5.0242 0.2911 10 8 1.8166 -6.3576 0.2975 11 7 1.7815 -6.8362 -0.8095 12 6 1.8091 -5.9290 -1.7404 13 6 1.7738 -6.1478 -3.2310 14 9 3.0800 -6.2820 -3.7138 15 9 1.0500 -7.3109 -3.5146 16 9 1.1585 -5.0535 -3.8484 17 6 2.0284 -2.2644 0.6968 18 6 2.0862 -0.8075 1.2024 19 1 1.4548 -0.6793 2.0817 20 7 3.4667 -0.4152 1.4962 21 6 4.0067 -0.6797 2.7265 22 1 3.4146 -1.1773 3.4804 23 6 5.3146 -0.3075 3.0050 24 7 5.8334 -0.5613 4.1878 25 14 6.3384 0.5537 1.7014 26 1 6.1576 2.0229 1.8206 27 1 7.7713 0.2142 1.8930 28 1 5.9002 0.1088 0.3541 29 1 -0.3632 0.4525 0.9228 30 1 -0.3633 0.5729 -0.8531 31 1 -0.3634 -1.0252 -0.0695 32 1 3.1630 1.4033 -0.0696 33 1 1.6698 1.9731 -0.8531 34 1 1.7824 1.9302 0.9228 35 1 3.1251 -0.5272 -1.3987 36 1 1.4763 -0.6457 -2.0858 37 1 1.9217 -4.3738 1.1523 38 1 1.1218 -2.7476 1.0609 39 1 2.9063 -2.8113 1.0410 40 1 3.9983 0.0320 0.8193 41 1 6.7476 -0.3015 4.3823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996059436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:15 Heat of formation + Delta-G solvation = -88.786669 kcal Electronic energy + Delta-G solvation = -32102.183088 eV Core-core repulsion = 27185.963300 eV Total energy + Delta-G solvation = -4916.219788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.29519 -47.87260 -47.71505 -45.56145 -40.34889 -38.19417 -34.62279 -34.35934 -33.68683 -32.31879 -31.26004 -28.58918 -27.77859 -27.07628 -26.69671 -24.75128 -23.62759 -22.29187 -21.53070 -20.39589 -19.30168 -18.88020 -18.78699 -18.40977 -18.03790 -17.73913 -17.27728 -16.35378 -16.09244 -15.66477 -14.91444 -14.68884 -14.66728 -14.59926 -14.30170 -14.18093 -13.93452 -13.88959 -13.82138 -13.76150 -13.16035 -12.94803 -12.70241 -12.66826 -12.37285 -12.25977 -12.24423 -11.98299 -11.83624 -11.42432 -11.12139 -11.08770 -10.80957 -10.73019 -10.43838 -10.21984 -10.18679 -10.05713 -9.75151 -9.18326 -8.62959 -7.53488 -5.97270 -3.35720 0.68172 0.89656 2.02601 2.36937 2.94909 3.00046 3.11673 3.23856 3.26209 3.34118 3.44870 4.11115 4.18232 4.21029 4.41214 4.42927 4.52904 4.73367 4.74263 4.88219 5.06511 5.10592 5.29645 5.34771 5.42444 5.64165 5.65419 5.76198 5.84873 5.88441 5.98903 6.03714 6.05433 6.22605 6.29665 6.44121 6.52472 7.41390 7.47133 7.75322 8.00436 8.21124 8.97341 9.70092 9.87416 11.19930 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003618 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.409815 B = 7737.442626 C = 8458.263020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.128 4.128 4 C 0.122 3.878 5 N -0.596 5.596 6 C 0.599 3.401 7 O -0.523 6.523 8 C -0.204 4.204 9 C 0.004 3.996 10 O 0.130 5.870 11 N -0.298 5.298 12 C -0.041 4.041 13 C 0.559 3.441 14 F -0.164 7.164 15 F -0.169 7.169 16 F -0.139 7.139 17 C 0.052 3.948 18 C 0.187 3.813 19 H 0.084 0.916 20 N -0.736 5.736 21 C -0.257 4.257 22 H 0.094 0.906 23 C 0.015 3.985 24 N -0.925 5.925 25 Si 0.877 3.123 26 H -0.281 1.281 27 H -0.289 1.289 28 H -0.277 1.277 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.249 0.751 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.365 0.635 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 -5.595 -9.472 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.186 4.186 4 C 0.000 4.000 5 N -0.328 5.328 6 C 0.386 3.614 7 O -0.400 6.400 8 C -0.212 4.212 9 C -0.076 4.076 10 O 0.058 5.942 11 N 0.005 4.995 12 C -0.205 4.205 13 C 0.503 3.497 14 F -0.145 7.145 15 F -0.151 7.151 16 F -0.120 7.120 17 C -0.074 4.074 18 C 0.075 3.925 19 H 0.102 0.898 20 N -0.378 5.378 21 C -0.387 4.387 22 H 0.112 0.888 23 C -0.182 4.182 24 N -0.571 5.571 25 Si 0.707 3.293 26 H -0.207 1.207 27 H -0.216 1.216 28 H -0.203 1.203 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.199 0.801 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.905 -6.979 -9.980 17.030 hybrid contribution 1.094 1.213 -1.075 1.956 sum -10.810 -5.765 -11.055 16.502 Atomic orbital electron populations 1.21679 0.93266 1.01769 1.02043 1.22107 0.95924 0.95973 0.95267 1.21605 1.01224 0.93822 1.01907 1.22406 1.01299 0.78780 0.97538 1.48153 1.70981 1.06016 1.07634 1.16298 0.77961 0.81520 0.85644 1.90875 1.50610 1.85336 1.13224 1.22126 1.12253 0.94582 0.92230 1.27461 0.96416 0.83825 0.99915 1.84640 1.65120 1.20678 1.23729 1.73707 1.13848 1.21789 0.90190 1.24620 1.09636 0.90528 0.95671 1.16539 0.74760 0.74766 0.83586 1.93259 1.36685 1.95564 1.89028 1.93238 1.77933 1.49517 1.94363 1.93378 1.82395 1.52800 1.83387 1.23671 1.01000 1.04016 0.78722 1.21164 0.87910 0.88522 0.94882 0.89814 1.42834 1.09454 1.71034 1.14490 1.19010 0.96398 1.33906 0.89357 0.88841 1.24645 0.96936 1.00366 0.96225 1.69683 1.15398 1.51496 1.20572 0.86681 0.80595 0.80186 0.81803 1.20741 1.21562 1.20345 0.91895 0.92524 0.92679 0.92216 0.92975 0.91408 0.91103 0.90336 0.73533 0.91690 0.89513 0.80068 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.59 37.16 0.32 -1.01 16 2 C -0.09 -1.13 0.83 -152.24 -0.13 -1.26 16 3 C -0.13 -1.61 8.22 37.16 0.31 -1.31 16 4 C 0.12 1.66 5.82 -2.41 -0.01 1.65 16 5 N -0.60 -8.32 3.31 -171.65 -0.57 -8.89 16 6 C 0.60 9.16 7.83 -12.53 -0.10 9.06 16 7 O -0.52 -9.39 14.34 5.27 0.08 -9.32 16 8 C -0.20 -2.73 6.36 -102.90 -0.65 -3.38 16 9 C 0.00 0.04 10.83 30.41 0.33 0.37 16 10 O 0.13 1.44 11.06 18.63 0.21 1.64 16 11 N -0.30 -3.90 11.98 34.78 0.42 -3.49 16 12 C -0.04 -0.57 6.86 -79.77 -0.55 -1.12 16 13 C 0.56 7.90 3.49 36.01 0.13 8.03 16 14 F -0.16 -2.39 17.30 2.25 0.04 -2.35 16 15 F -0.17 -2.24 17.28 2.25 0.04 -2.20 16 16 F -0.14 -2.12 14.28 2.25 0.03 -2.09 16 17 C 0.05 0.66 4.46 -3.06 -0.01 0.65 16 18 C 0.19 2.76 2.86 -66.10 -0.19 2.57 16 19 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 20 N -0.74 -14.33 4.41 -51.65 -0.23 -14.56 16 21 C -0.26 -6.20 10.46 -15.06 -0.16 -6.36 16 22 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 23 C 0.02 0.41 5.50 -17.43 -0.10 0.31 16 24 N -0.93 -26.66 13.97 55.49 0.78 -25.88 16 25 Si 0.88 20.34 27.74 -169.99 -4.71 15.62 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 7.91 -51.93 -0.41 0.15 16 32 H 0.06 0.86 6.38 -51.93 -0.33 0.53 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.06 7.99 -51.93 -0.41 0.64 16 36 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 37 H 0.25 1.89 4.83 -52.49 -0.25 1.64 16 38 H 0.07 0.63 6.95 -51.93 -0.36 0.27 16 39 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 40 H 0.36 7.28 3.96 -40.82 -0.16 7.11 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -30.13 348.47 -3.90 -34.03 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.41 Total: 4.02 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.82 Total: 8.21 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.40 Total: -52.82 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.28 Total: -7.67 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.11 Total: -6.64 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.71 Total: 15.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.13 -3.90 -34.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996059436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.754 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds