Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.89019 * 2 1 4 4 C 1.55129 * 111.18798 * 236.06975 * 2 1 3 5 5 N 1.47430 * 104.72418 * 279.19244 * 4 2 1 6 6 C 1.34773 * 125.65196 * 155.82050 * 5 4 2 7 7 O 1.21613 * 119.99881 * 359.71464 * 6 5 4 8 8 C 1.47396 * 119.99991 * 179.44268 * 6 5 4 9 9 C 1.37358 * 128.56502 * 0.29595 * 8 6 5 10 10 O 1.33501 * 106.33924 * 180.02562 * 9 8 6 11 11 N 1.20653 * 113.15511 * 359.97438 * 10 9 8 12 12 C 1.30012 * 112.30231 * 359.69305 * 11 10 9 13 13 C 1.50703 * 127.33126 * 180.31668 * 12 11 10 14 14 F 1.39899 * 109.47389 * 270.16597 * 13 12 11 15 15 F 1.39895 * 109.47340 * 30.17338 * 13 12 11 16 16 F 1.39902 * 109.46809 * 150.16807 * 13 12 11 17 17 C 1.47027 * 108.69819 * 335.55342 * 5 4 2 18 18 C 1.54324 * 107.27233 * 1.28428 * 17 5 4 19 19 H 1.09006 * 110.71314 * 140.73141 * 18 17 5 20 20 N 1.46491 * 110.72258 * 263.82893 * 18 17 5 21 21 C 1.36938 * 120.00273 * 273.55047 * 20 18 17 22 22 H 1.08002 * 119.99701 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00280 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99948 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99937 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47256 * 90.00035 * 25 23 21 27 27 H 1.48499 * 109.47222 * 210.00121 * 25 23 21 28 28 H 1.48494 * 109.47132 * 330.00208 * 25 23 21 29 29 H 1.09006 * 109.46491 * 296.11874 * 1 2 3 30 30 H 1.08997 * 109.47031 * 56.11532 * 1 2 3 31 31 H 1.08997 * 109.47687 * 176.12060 * 1 2 3 32 32 H 1.09000 * 109.47257 * 183.88624 * 3 2 1 33 33 H 1.09002 * 109.46813 * 303.88520 * 3 2 1 34 34 H 1.09004 * 109.47020 * 63.88184 * 3 2 1 35 35 H 1.08999 * 110.49618 * 160.35106 * 4 2 1 36 36 H 1.08994 * 110.34774 * 37.95284 * 4 2 1 37 37 H 1.07998 * 126.83096 * 0.02562 * 9 8 6 38 38 H 1.09000 * 109.87929 * 120.70863 * 17 5 4 39 39 H 1.09004 * 109.88144 * 241.87171 * 17 5 4 40 40 H 0.97000 * 120.00221 * 93.55107 * 20 18 17 41 41 H 0.97005 * 119.99961 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0137 -2.2162 -0.7726 6 6 1.9469 -3.2835 -1.5929 7 8 1.9417 -3.1244 -2.7986 8 6 1.8861 -4.6439 -1.0288 9 6 1.8813 -5.0242 0.2911 10 8 1.8166 -6.3576 0.2975 11 7 1.7815 -6.8362 -0.8095 12 6 1.8091 -5.9290 -1.7404 13 6 1.7738 -6.1478 -3.2310 14 9 3.0800 -6.2820 -3.7138 15 9 1.0500 -7.3109 -3.5146 16 9 1.1585 -5.0535 -3.8484 17 6 2.0284 -2.2644 0.6968 18 6 2.0862 -0.8075 1.2024 19 1 1.4548 -0.6793 2.0817 20 7 3.4667 -0.4152 1.4962 21 6 4.0067 -0.6797 2.7265 22 1 3.4146 -1.1773 3.4804 23 6 5.3146 -0.3075 3.0050 24 7 5.8334 -0.5613 4.1878 25 14 6.3384 0.5537 1.7014 26 1 6.1576 2.0229 1.8206 27 1 7.7713 0.2142 1.8930 28 1 5.9002 0.1088 0.3541 29 1 -0.3632 0.4525 0.9228 30 1 -0.3633 0.5729 -0.8531 31 1 -0.3634 -1.0252 -0.0695 32 1 3.1630 1.4033 -0.0696 33 1 1.6698 1.9731 -0.8531 34 1 1.7824 1.9302 0.9228 35 1 3.1251 -0.5272 -1.3987 36 1 1.4763 -0.6457 -2.0858 37 1 1.9217 -4.3738 1.1523 38 1 1.1218 -2.7476 1.0609 39 1 2.9063 -2.8113 1.0410 40 1 3.9983 0.0320 0.8193 41 1 6.7476 -0.3015 4.3823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996059436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = -107.768031 kcal Electronic energy + Delta-G solvation = -32103.006182 eV Core-core repulsion = 27185.963300 eV Total energy + Delta-G solvation = -4917.042882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.40431 -48.97131 -48.84988 -46.55781 -41.48358 -39.38304 -35.87564 -35.63591 -34.91383 -33.36268 -32.96003 -29.84704 -28.84158 -28.07602 -27.76260 -25.98358 -25.00332 -23.43071 -22.76913 -21.44909 -20.57778 -19.96370 -19.84599 -19.52935 -19.35047 -19.05482 -18.34768 -17.47575 -17.27543 -16.76859 -16.43296 -16.08067 -15.78882 -15.78086 -15.37401 -15.30353 -15.27576 -15.02409 -14.95594 -14.79668 -14.52868 -14.37803 -13.83894 -13.74650 -13.62695 -13.43650 -13.24880 -13.16264 -12.88773 -12.77467 -12.69067 -12.23305 -12.08290 -11.92472 -11.86392 -11.57286 -11.41702 -11.22638 -11.17882 -10.96133 -9.77408 -9.29377 -7.97575 -5.29546 -0.27871 -0.10369 0.98498 1.38227 1.39563 1.40008 1.47096 1.86302 1.94419 2.06497 2.40670 2.50646 3.01192 3.13381 3.17657 3.32679 3.44300 3.49365 3.56392 3.73579 3.77922 3.99496 4.22491 4.26838 4.41471 4.53832 4.60947 4.73772 4.84533 4.91100 4.98139 5.06559 5.11159 5.18010 5.30941 5.42062 5.53116 5.86206 6.26796 6.30388 6.52637 6.86514 7.12930 7.89128 8.04805 9.23043 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003618 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.409815 B = 7737.442626 C = 8458.263020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.598 3.402 7 O -0.557 6.557 8 C -0.227 4.227 9 C 0.039 3.961 10 O 0.146 5.854 11 N -0.305 5.305 12 C -0.056 4.056 13 C 0.559 3.441 14 F -0.170 7.170 15 F -0.165 7.165 16 F -0.147 7.147 17 C 0.054 3.946 18 C 0.176 3.824 19 H 0.094 0.906 20 N -0.741 5.741 21 C -0.216 4.216 22 H 0.079 0.921 23 C -0.051 4.051 24 N -0.978 5.978 25 Si 0.929 3.071 26 H -0.280 1.280 27 H -0.306 1.306 28 H -0.261 1.261 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.278 0.722 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.363 0.637 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 -5.559 -9.733 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.386 3.614 7 O -0.437 6.437 8 C -0.235 4.235 9 C -0.041 4.041 10 O 0.073 5.927 11 N -0.001 5.001 12 C -0.219 4.219 13 C 0.503 3.497 14 F -0.151 7.151 15 F -0.147 7.147 16 F -0.128 7.128 17 C -0.071 4.071 18 C 0.066 3.934 19 H 0.112 0.888 20 N -0.384 5.384 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.244 4.244 24 N -0.629 5.629 25 Si 0.759 3.241 26 H -0.206 1.206 27 H -0.234 1.234 28 H -0.186 1.186 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.293 0.707 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.198 0.802 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.886 -6.951 -10.295 18.631 hybrid contribution 1.566 1.171 -0.982 2.188 sum -12.321 -5.780 -11.276 17.674 Atomic orbital electron populations 1.21654 0.90909 1.02450 1.03181 1.22059 0.97519 0.95228 0.93137 1.21613 0.99974 0.94212 1.02833 1.22445 1.00596 0.78905 0.98408 1.48175 1.70374 1.05917 1.07946 1.16490 0.77385 0.82234 0.85320 1.90856 1.52310 1.85885 1.14657 1.21989 1.14583 0.93617 0.93361 1.27857 0.93373 0.83447 0.99429 1.84647 1.64237 1.21010 1.22854 1.73717 1.13960 1.21902 0.90504 1.24603 1.10684 0.91103 0.95497 1.16585 0.74484 0.74614 0.84011 1.93242 1.37103 1.95583 1.89195 1.93240 1.77799 1.49227 1.94406 1.93356 1.82524 1.53302 1.83645 1.23613 1.02771 1.02621 0.78085 1.21461 0.85461 0.90018 0.96416 0.88836 1.42883 1.11408 1.71235 1.12825 1.19065 0.95408 1.29988 0.90234 0.90314 1.25220 0.98627 1.02808 0.97703 1.69824 1.15447 1.54792 1.22793 0.85808 0.78305 0.79314 0.80649 1.20586 1.23398 1.18620 0.90852 0.91356 0.92249 0.94278 0.90752 0.91613 0.92752 0.89816 0.70716 0.87390 0.90417 0.80248 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 8.59 71.98 0.62 -1.42 16 2 C -0.08 -1.71 0.83 -50.71 -0.04 -1.75 16 3 C -0.13 -2.92 8.22 71.98 0.59 -2.33 16 4 C 0.12 2.98 5.82 86.93 0.51 3.48 16 5 N -0.59 -15.07 3.31 -815.23 -2.70 -17.77 16 6 C 0.60 17.23 7.83 86.66 0.68 17.91 16 7 O -0.56 -19.61 14.34 -4.07 -0.06 -19.67 16 8 C -0.23 -5.59 6.36 -18.75 -0.12 -5.70 16 9 C 0.04 0.67 10.83 67.61 0.73 1.40 16 10 O 0.15 2.80 11.06 76.92 0.85 3.65 16 11 N -0.31 -7.40 11.98 -44.79 -0.54 -7.93 16 12 C -0.06 -1.49 6.86 45.16 0.31 -1.18 16 13 C 0.56 15.53 3.49 71.24 0.25 15.77 16 14 F -0.17 -4.93 17.30 44.97 0.78 -4.15 16 15 F -0.17 -4.28 17.28 44.97 0.78 -3.51 16 16 F -0.15 -4.48 14.28 44.97 0.64 -3.84 16 17 C 0.05 1.19 4.46 86.73 0.39 1.58 16 18 C 0.18 4.65 2.86 46.18 0.13 4.79 16 19 H 0.09 2.37 8.03 -2.38 -0.02 2.35 16 20 N -0.74 -27.43 4.41 -317.34 -1.40 -28.83 16 21 C -0.22 -10.18 10.46 84.03 0.88 -9.30 16 22 H 0.08 3.93 8.06 -2.91 -0.02 3.91 16 23 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16 24 N -0.98 -57.42 13.97 21.65 0.30 -57.11 16 25 Si 0.93 42.18 27.74 68.60 1.90 44.09 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 28 H -0.26 -10.92 6.52 99.48 0.65 -10.27 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.95 7.91 -2.39 -0.02 0.93 16 32 H 0.04 1.05 6.38 -2.39 -0.02 1.03 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.05 1.55 7.99 -2.39 -0.02 1.53 16 36 H 0.08 2.03 7.95 -2.39 -0.02 2.02 16 37 H 0.28 2.93 4.83 -2.91 -0.01 2.91 16 38 H 0.11 1.53 6.95 -2.39 -0.02 1.52 16 39 H 0.08 1.94 7.00 -2.38 -0.02 1.92 16 40 H 0.36 13.85 3.96 -92.71 -0.37 13.48 16 41 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -66.38 348.47 6.63 -59.74 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.68 Total: 14.32 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.39 Total: 21.00 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.33 Total: -111.64 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.79 Total: -16.02 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 2.20 Total: -11.50 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.90 Total: 44.09 kcal Total: -66.38 6.63 -59.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996059436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.023 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds