Wall clock time and date at job start Wed Apr 1 2020 04:39:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 110.89019 * 2 1
4 4 C 1.55129 * 111.18798 * 236.06975 * 2 1 3
5 5 N 1.47430 * 104.72418 * 279.19244 * 4 2 1
6 6 C 1.34773 * 125.65196 * 155.82050 * 5 4 2
7 7 O 1.21613 * 119.99881 * 359.71464 * 6 5 4
8 8 C 1.47396 * 119.99991 * 179.44268 * 6 5 4
9 9 C 1.37358 * 128.56502 * 0.29595 * 8 6 5
10 10 O 1.33501 * 106.33924 * 180.02562 * 9 8 6
11 11 N 1.20653 * 113.15511 * 359.97438 * 10 9 8
12 12 C 1.30012 * 112.30231 * 359.69305 * 11 10 9
13 13 C 1.50703 * 127.33126 * 180.31668 * 12 11 10
14 14 F 1.39899 * 109.47389 * 270.16597 * 13 12 11
15 15 F 1.39895 * 109.47340 * 30.17338 * 13 12 11
16 16 F 1.39902 * 109.46809 * 150.16807 * 13 12 11
17 17 C 1.47027 * 108.69819 * 335.55342 * 5 4 2
18 18 C 1.54324 * 107.27233 * 1.28428 * 17 5 4
19 19 H 1.09006 * 110.71314 * 140.73141 * 18 17 5
20 20 N 1.46491 * 110.72258 * 263.82893 * 18 17 5
21 21 C 1.36938 * 120.00273 * 273.55047 * 20 18 17
22 22 H 1.08002 * 119.99701 * 359.97438 * 21 20 18
23 23 C 1.38811 * 120.00280 * 180.02562 * 21 20 18
24 24 N 1.31620 * 119.99948 * 179.97438 * 23 21 20
25 25 Si 1.86798 * 119.99937 * 359.97438 * 23 21 20
26 26 H 1.48503 * 109.47256 * 90.00035 * 25 23 21
27 27 H 1.48499 * 109.47222 * 210.00121 * 25 23 21
28 28 H 1.48494 * 109.47132 * 330.00208 * 25 23 21
29 29 H 1.09006 * 109.46491 * 296.11874 * 1 2 3
30 30 H 1.08997 * 109.47031 * 56.11532 * 1 2 3
31 31 H 1.08997 * 109.47687 * 176.12060 * 1 2 3
32 32 H 1.09000 * 109.47257 * 183.88624 * 3 2 1
33 33 H 1.09002 * 109.46813 * 303.88520 * 3 2 1
34 34 H 1.09004 * 109.47020 * 63.88184 * 3 2 1
35 35 H 1.08999 * 110.49618 * 160.35106 * 4 2 1
36 36 H 1.08994 * 110.34774 * 37.95284 * 4 2 1
37 37 H 1.07998 * 126.83096 * 0.02562 * 9 8 6
38 38 H 1.09000 * 109.87929 * 120.70863 * 17 5 4
39 39 H 1.09004 * 109.88144 * 241.87171 * 17 5 4
40 40 H 0.97000 * 120.00221 * 93.55107 * 20 18 17
41 41 H 0.97005 * 119.99961 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0755 1.4294 0.0000
4 6 2.0907 -0.8074 -1.2001
5 7 2.0137 -2.2162 -0.7726
6 6 1.9469 -3.2835 -1.5929
7 8 1.9417 -3.1244 -2.7986
8 6 1.8861 -4.6439 -1.0288
9 6 1.8813 -5.0242 0.2911
10 8 1.8166 -6.3576 0.2975
11 7 1.7815 -6.8362 -0.8095
12 6 1.8091 -5.9290 -1.7404
13 6 1.7738 -6.1478 -3.2310
14 9 3.0800 -6.2820 -3.7138
15 9 1.0500 -7.3109 -3.5146
16 9 1.1585 -5.0535 -3.8484
17 6 2.0284 -2.2644 0.6968
18 6 2.0862 -0.8075 1.2024
19 1 1.4548 -0.6793 2.0817
20 7 3.4667 -0.4152 1.4962
21 6 4.0067 -0.6797 2.7265
22 1 3.4146 -1.1773 3.4804
23 6 5.3146 -0.3075 3.0050
24 7 5.8334 -0.5613 4.1878
25 14 6.3384 0.5537 1.7014
26 1 6.1576 2.0229 1.8206
27 1 7.7713 0.2142 1.8930
28 1 5.9002 0.1088 0.3541
29 1 -0.3632 0.4525 0.9228
30 1 -0.3633 0.5729 -0.8531
31 1 -0.3634 -1.0252 -0.0695
32 1 3.1630 1.4033 -0.0696
33 1 1.6698 1.9731 -0.8531
34 1 1.7824 1.9302 0.9228
35 1 3.1251 -0.5272 -1.3987
36 1 1.4763 -0.6457 -2.0858
37 1 1.9217 -4.3738 1.1523
38 1 1.1218 -2.7476 1.0609
39 1 2.9063 -2.8113 1.0410
40 1 3.9983 0.0320 0.8193
41 1 6.7476 -0.3015 4.3823
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996059436.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:14
Heat of formation + Delta-G solvation = -107.768031 kcal
Electronic energy + Delta-G solvation = -32103.006182 eV
Core-core repulsion = 27185.963300 eV
Total energy + Delta-G solvation = -4917.042882 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-51.40431 -48.97131 -48.84988 -46.55781 -41.48358 -39.38304 -35.87564 -35.63591
-34.91383 -33.36268 -32.96003 -29.84704 -28.84158 -28.07602 -27.76260 -25.98358
-25.00332 -23.43071 -22.76913 -21.44909 -20.57778 -19.96370 -19.84599 -19.52935
-19.35047 -19.05482 -18.34768 -17.47575 -17.27543 -16.76859 -16.43296 -16.08067
-15.78882 -15.78086 -15.37401 -15.30353 -15.27576 -15.02409 -14.95594 -14.79668
-14.52868 -14.37803 -13.83894 -13.74650 -13.62695 -13.43650 -13.24880 -13.16264
-12.88773 -12.77467 -12.69067 -12.23305 -12.08290 -11.92472 -11.86392 -11.57286
-11.41702 -11.22638 -11.17882 -10.96133 -9.77408 -9.29377 -7.97575 -5.29546
-0.27871 -0.10369 0.98498 1.38227 1.39563 1.40008 1.47096 1.86302
1.94419 2.06497 2.40670 2.50646 3.01192 3.13381 3.17657 3.32679
3.44300 3.49365 3.56392 3.73579 3.77922 3.99496 4.22491 4.26838
4.41471 4.53832 4.60947 4.73772 4.84533 4.91100 4.98139 5.06559
5.11159 5.18010 5.30941 5.42062 5.53116 5.86206 6.26796 6.30388
6.52637 6.86514 7.12930 7.89128 8.04805 9.23043
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.013239 B = 0.003618 C = 0.003310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2114.409815 B = 7737.442626 C = 8458.263020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.078 4.078
3 C -0.129 4.129
4 C 0.118 3.882
5 N -0.593 5.593
6 C 0.598 3.402
7 O -0.557 6.557
8 C -0.227 4.227
9 C 0.039 3.961
10 O 0.146 5.854
11 N -0.305 5.305
12 C -0.056 4.056
13 C 0.559 3.441
14 F -0.170 7.170
15 F -0.165 7.165
16 F -0.147 7.147
17 C 0.054 3.946
18 C 0.176 3.824
19 H 0.094 0.906
20 N -0.741 5.741
21 C -0.216 4.216
22 H 0.079 0.921
23 C -0.051 4.051
24 N -0.978 5.978
25 Si 0.929 3.071
26 H -0.280 1.280
27 H -0.306 1.306
28 H -0.261 1.261
29 H 0.073 0.927
30 H 0.067 0.933
31 H 0.058 0.942
32 H 0.038 0.962
33 H 0.074 0.926
34 H 0.065 0.935
35 H 0.054 0.946
36 H 0.083 0.917
37 H 0.278 0.722
38 H 0.108 0.892
39 H 0.078 0.922
40 H 0.363 0.637
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.840 -5.559 -9.733 17.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.079 4.079
3 C -0.186 4.186
4 C -0.004 4.004
5 N -0.324 5.324
6 C 0.386 3.614
7 O -0.437 6.437
8 C -0.235 4.235
9 C -0.041 4.041
10 O 0.073 5.927
11 N -0.001 5.001
12 C -0.219 4.219
13 C 0.503 3.497
14 F -0.151 7.151
15 F -0.147 7.147
16 F -0.128 7.128
17 C -0.071 4.071
18 C 0.066 3.934
19 H 0.112 0.888
20 N -0.384 5.384
21 C -0.347 4.347
22 H 0.097 0.903
23 C -0.244 4.244
24 N -0.629 5.629
25 Si 0.759 3.241
26 H -0.206 1.206
27 H -0.234 1.234
28 H -0.186 1.186
29 H 0.091 0.909
30 H 0.086 0.914
31 H 0.078 0.922
32 H 0.057 0.943
33 H 0.092 0.908
34 H 0.084 0.916
35 H 0.072 0.928
36 H 0.102 0.898
37 H 0.293 0.707
38 H 0.126 0.874
39 H 0.096 0.904
40 H 0.198 0.802
41 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -13.886 -6.951 -10.295 18.631
hybrid contribution 1.566 1.171 -0.982 2.188
sum -12.321 -5.780 -11.276 17.674
Atomic orbital electron populations
1.21654 0.90909 1.02450 1.03181 1.22059 0.97519 0.95228 0.93137
1.21613 0.99974 0.94212 1.02833 1.22445 1.00596 0.78905 0.98408
1.48175 1.70374 1.05917 1.07946 1.16490 0.77385 0.82234 0.85320
1.90856 1.52310 1.85885 1.14657 1.21989 1.14583 0.93617 0.93361
1.27857 0.93373 0.83447 0.99429 1.84647 1.64237 1.21010 1.22854
1.73717 1.13960 1.21902 0.90504 1.24603 1.10684 0.91103 0.95497
1.16585 0.74484 0.74614 0.84011 1.93242 1.37103 1.95583 1.89195
1.93240 1.77799 1.49227 1.94406 1.93356 1.82524 1.53302 1.83645
1.23613 1.02771 1.02621 0.78085 1.21461 0.85461 0.90018 0.96416
0.88836 1.42883 1.11408 1.71235 1.12825 1.19065 0.95408 1.29988
0.90234 0.90314 1.25220 0.98627 1.02808 0.97703 1.69824 1.15447
1.54792 1.22793 0.85808 0.78305 0.79314 0.80649 1.20586 1.23398
1.18620 0.90852 0.91356 0.92249 0.94278 0.90752 0.91613 0.92752
0.89816 0.70716 0.87390 0.90417 0.80248 0.93661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.04 8.59 71.98 0.62 -1.42 16
2 C -0.08 -1.71 0.83 -50.71 -0.04 -1.75 16
3 C -0.13 -2.92 8.22 71.98 0.59 -2.33 16
4 C 0.12 2.98 5.82 86.93 0.51 3.48 16
5 N -0.59 -15.07 3.31 -815.23 -2.70 -17.77 16
6 C 0.60 17.23 7.83 86.66 0.68 17.91 16
7 O -0.56 -19.61 14.34 -4.07 -0.06 -19.67 16
8 C -0.23 -5.59 6.36 -18.75 -0.12 -5.70 16
9 C 0.04 0.67 10.83 67.61 0.73 1.40 16
10 O 0.15 2.80 11.06 76.92 0.85 3.65 16
11 N -0.31 -7.40 11.98 -44.79 -0.54 -7.93 16
12 C -0.06 -1.49 6.86 45.16 0.31 -1.18 16
13 C 0.56 15.53 3.49 71.24 0.25 15.77 16
14 F -0.17 -4.93 17.30 44.97 0.78 -4.15 16
15 F -0.17 -4.28 17.28 44.97 0.78 -3.51 16
16 F -0.15 -4.48 14.28 44.97 0.64 -3.84 16
17 C 0.05 1.19 4.46 86.73 0.39 1.58 16
18 C 0.18 4.65 2.86 46.18 0.13 4.79 16
19 H 0.09 2.37 8.03 -2.38 -0.02 2.35 16
20 N -0.74 -27.43 4.41 -317.34 -1.40 -28.83 16
21 C -0.22 -10.18 10.46 84.03 0.88 -9.30 16
22 H 0.08 3.93 8.06 -2.91 -0.02 3.91 16
23 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16
24 N -0.98 -57.42 13.97 21.65 0.30 -57.11 16
25 Si 0.93 42.18 27.74 68.60 1.90 44.09 16
26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
27 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16
28 H -0.26 -10.92 6.52 99.48 0.65 -10.27 16
29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16
30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16
31 H 0.06 0.95 7.91 -2.39 -0.02 0.93 16
32 H 0.04 1.05 6.38 -2.39 -0.02 1.03 16
33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
35 H 0.05 1.55 7.99 -2.39 -0.02 1.53 16
36 H 0.08 2.03 7.95 -2.39 -0.02 2.02 16
37 H 0.28 2.93 4.83 -2.91 -0.01 2.91 16
38 H 0.11 1.53 6.95 -2.39 -0.02 1.52 16
39 H 0.08 1.94 7.00 -2.38 -0.02 1.92 16
40 H 0.36 13.85 3.96 -92.71 -0.37 13.48 16
41 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16
Total: -1.00 -66.38 348.47 6.63 -59.74
By element:
Atomic # 1 Polarization: 13.64 SS G_CDS: 0.68 Total: 14.32 kcal
Atomic # 6 Polarization: 15.61 SS G_CDS: 5.39 Total: 21.00 kcal
Atomic # 7 Polarization: -107.31 SS G_CDS: -4.33 Total: -111.64 kcal
Atomic # 8 Polarization: -16.81 SS G_CDS: 0.79 Total: -16.02 kcal
Atomic # 9 Polarization: -13.69 SS G_CDS: 2.20 Total: -11.50 kcal
Atomic # 14 Polarization: 42.18 SS G_CDS: 1.90 Total: 44.09 kcal
Total: -66.38 6.63 -59.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996059436.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.023 kcal
(2) G-P(sol) polarization free energy of solvation -66.377 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds