Wall clock time and date at job start Wed Apr 1 2020 04:15:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86801 * 119.99671 * 2 1
4 4 H 1.48505 * 109.46756 * 270.00013 * 3 2 1
5 5 H 1.48495 * 109.47453 * 29.99702 * 3 2 1
6 6 H 1.48497 * 109.47130 * 150.00240 * 3 2 1
7 7 C 1.38811 * 120.00381 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99974 * 359.97438 * 7 2 1
10 10 C 1.46497 * 120.00227 * 179.97438 * 9 7 2
11 11 H 1.09000 * 109.49528 * 35.06907 * 10 9 7
12 12 C 1.53178 * 109.49980 * 275.00202 * 10 9 7
13 13 N 1.46927 * 108.77792 * 185.41131 * 12 10 9
14 14 C 1.34777 * 120.63332 * 233.63135 * 13 12 10
15 15 O 1.21288 * 119.99622 * 359.97435 * 14 13 12
16 16 C 1.50699 * 120.00134 * 179.97438 * 14 13 12
17 17 C 1.50700 * 109.47329 * 179.97438 * 16 14 13
18 18 C 1.41375 * 126.80298 * 124.70211 * 17 16 14
19 19 C 1.35451 * 103.98795 * 179.89202 * 18 17 16
20 20 O 1.34042 * 106.44468 * 0.37366 * 19 18 17
21 21 N 1.20920 * 111.56411 * 359.74844 * 20 19 18
22 22 C 1.46928 * 118.73615 * 53.60840 * 13 12 10
23 23 C 1.53187 * 108.77623 * 306.39196 * 22 13 12
24 24 C 1.53036 * 109.33909 * 54.61900 * 23 22 13
25 25 H 1.08998 * 109.46343 * 58.67009 * 24 23 22
26 26 C 1.52999 * 109.46209 * 178.63045 * 24 23 22
27 27 F 1.39905 * 109.47026 * 60.00082 * 26 24 23
28 28 F 1.39900 * 109.47564 * 180.02562 * 26 24 23
29 29 F 1.39900 * 109.47185 * 299.99903 * 26 24 23
30 30 H 0.96995 * 120.00329 * 0.02562 * 1 2 3
31 31 H 0.97008 * 119.99995 * 0.02562 * 9 7 2
32 32 H 1.08999 * 109.58877 * 65.62181 * 12 10 9
33 33 H 1.09003 * 109.70714 * 305.26747 * 12 10 9
34 34 H 1.08999 * 109.46873 * 299.99877 * 16 14 13
35 35 H 1.08996 * 109.46994 * 60.00017 * 16 14 13
36 36 H 1.08004 * 128.00679 * 0.03406 * 18 17 16
37 37 H 1.08000 * 126.77780 * 180.14659 * 19 18 17
38 38 H 1.09000 * 109.58414 * 186.60362 * 22 13 12
39 39 H 1.08999 * 109.58551 * 66.18287 * 22 13 12
40 40 H 1.09002 * 109.49796 * 174.58834 * 23 22 13
41 41 H 1.09000 * 109.49812 * 294.65558 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0464 -1.4002
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4403 0.7000
7 6 2.0104 -1.2021 -0.0005
8 1 3.0904 -1.2020 -0.0001
9 7 1.3258 -2.3880 -0.0005
10 6 2.0583 -3.6567 -0.0017
11 1 2.9689 -3.5515 0.5880
12 6 2.4218 -4.0359 -1.4406
13 7 3.0391 -5.3692 -1.4367
14 6 4.2432 -5.5702 -2.0079
15 8 4.8275 -4.6457 -2.5322
16 6 4.8634 -6.9436 -1.9952
17 6 6.1980 -6.8987 -2.6938
18 6 7.4442 -7.3075 -2.1662
19 6 8.3193 -7.0711 -3.1728
20 8 7.6047 -6.5581 -4.1842
21 7 6.4325 -6.4702 -3.9004
22 6 2.3190 -6.4792 -0.7978
23 6 1.9566 -6.0726 0.6340
24 6 1.1807 -4.7538 0.6053
25 1 0.2815 -4.8745 0.0012
26 6 0.7876 -4.3625 2.0312
27 9 1.9414 -4.2081 2.8073
28 9 0.0778 -3.1572 2.0052
29 9 -0.0163 -5.3647 2.5850
30 1 -0.4850 0.8400 -0.0004
31 1 0.3557 -2.3881 -0.0005
32 1 3.1264 -3.3083 -1.8433
33 1 1.5217 -4.0518 -2.0551
34 1 5.0032 -7.2696 -0.9645
35 1 4.2068 -7.6436 -2.5118
36 1 7.6505 -7.7161 -1.1880
37 1 9.3833 -7.2557 -3.1613
38 1 2.9557 -7.3636 -0.7764
39 1 1.4091 -6.6950 -1.3578
40 1 1.3391 -6.8482 1.0872
41 1 2.8681 -5.9457 1.2180
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000998240664.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:15:35
Heat of formation + Delta-G solvation = -102.828029 kcal
Electronic energy + Delta-G solvation = -31777.984221 eV
Core-core repulsion = 26861.155553 eV
Total energy + Delta-G solvation = -4916.828667 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.56298 -47.13204 -46.87630 -45.03422 -40.12728 -37.71479 -34.77646 -34.63476
-32.94680 -31.88527 -31.41201 -29.87694 -28.52395 -26.67067 -24.18273 -23.45878
-23.25763 -22.05527 -21.77729 -20.44873 -19.08603 -17.92975 -17.88074 -17.80257
-17.63852 -17.44286 -17.06238 -16.49530 -15.87243 -15.56540 -15.10075 -14.64956
-14.32635 -14.00521 -13.84579 -13.72075 -13.53937 -13.47178 -13.39329 -13.28162
-13.07573 -13.04096 -12.98145 -12.92753 -12.61618 -12.41230 -12.23563 -11.50775
-11.37399 -11.26179 -11.05987 -10.81902 -10.80482 -10.38467 -10.32652 -10.02403
-9.81497 -9.75358 -9.60704 -9.13586 -8.52020 -7.08459 -5.80936 -3.13097
1.42253 2.06397 2.69290 3.03236 3.17728 3.24147 3.44792 3.50227
3.51612 3.93965 4.18062 4.26806 4.29977 4.41117 4.57074 4.61047
4.81113 4.91200 4.96126 5.00930 5.08259 5.12908 5.24426 5.26859
5.37281 5.40526 5.52148 5.54907 5.67644 5.73868 5.83386 5.84116
5.98051 6.04992 6.47965 6.50723 6.76057 7.47642 7.68531 8.20405
8.26885 8.34459 9.47792 9.95062 10.30817 11.40421
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.010424 B = 0.003640 C = 0.002888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2685.582678 B = 7691.340967 C = 9694.184114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C -0.002 4.002
3 Si 0.907 3.093
4 H -0.288 1.288
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.249 4.249
8 H 0.072 0.928
9 N -0.714 5.714
10 C 0.173 3.827
11 H 0.065 0.935
12 C 0.097 3.903
13 N -0.611 5.611
14 C 0.513 3.487
15 O -0.522 6.522
16 C -0.062 4.062
17 C 0.023 3.977
18 C -0.229 4.229
19 C -0.066 4.066
20 O 0.104 5.896
21 N -0.335 5.335
22 C 0.112 3.888
23 C -0.131 4.131
24 C -0.142 4.142
25 H 0.111 0.889
26 C 0.457 3.543
27 F -0.186 7.186
28 F -0.154 7.154
29 F -0.199 7.199
30 H 0.256 0.744
31 H 0.390 0.610
32 H 0.099 0.901
33 H 0.066 0.934
34 H 0.115 0.885
35 H 0.111 0.889
36 H 0.171 0.829
37 H 0.215 0.785
38 H 0.088 0.912
39 H 0.075 0.925
40 H 0.087 0.913
41 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.940 -21.714 -0.328 23.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.199 4.199
3 Si 0.737 3.263
4 H -0.215 1.215
5 H -0.217 1.217
6 H -0.206 1.206
7 C -0.379 4.379
8 H 0.090 0.910
9 N -0.356 5.356
10 C 0.061 3.939
11 H 0.083 0.917
12 C -0.027 4.027
13 N -0.346 5.346
14 C 0.299 3.701
15 O -0.397 6.397
16 C -0.103 4.103
17 C -0.136 4.136
18 C -0.250 4.250
19 C -0.147 4.147
20 O 0.034 5.966
21 N -0.036 5.036
22 C -0.012 4.012
23 C -0.170 4.170
24 C -0.163 4.163
25 H 0.129 0.871
26 C 0.403 3.597
27 F -0.168 7.168
28 F -0.135 7.135
29 F -0.181 7.181
30 H 0.066 0.934
31 H 0.227 0.773
32 H 0.117 0.883
33 H 0.084 0.916
34 H 0.133 0.867
35 H 0.129 0.871
36 H 0.189 0.811
37 H 0.231 0.769
38 H 0.106 0.894
39 H 0.093 0.907
40 H 0.106 0.894
41 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 8.544 -20.486 -1.530 22.249
hybrid contribution 0.322 0.604 1.162 1.348
sum 8.866 -19.883 -0.368 21.773
Atomic orbital electron populations
1.69665 1.05099 1.25863 1.56567 1.24729 0.95467 0.97701 1.02024
0.86203 0.78763 0.83672 0.77615 1.21541 1.21710 1.20644 1.19170
0.91030 0.83634 1.44104 0.90997 1.42502 1.06069 0.99114 1.87946
1.20487 0.94387 0.85389 0.93667 0.91745 1.22749 0.98384 0.81957
0.99649 1.48290 1.18839 1.10971 1.56519 1.20248 0.81051 0.90127
0.78684 1.90772 1.61181 1.43936 1.43832 1.20057 0.91306 0.97084
1.01835 1.22905 0.96840 1.01868 0.92018 1.22683 0.91533 1.08442
1.02361 1.25988 1.00294 1.00359 0.88065 1.84885 1.13745 1.60178
1.37748 1.73908 0.95511 1.16802 1.17341 1.21680 0.97625 0.89357
0.92513 1.21970 1.01360 0.95782 0.97913 1.22831 1.03207 0.98659
0.91583 0.87083 1.20411 0.74757 0.75312 0.89220 1.93132 1.50094
1.95615 1.77948 1.93321 1.78481 1.45179 1.96513 1.93116 1.74985
1.61972 1.88009 0.93379 0.77348 0.88259 0.91550 0.86712 0.87132
0.81128 0.76852 0.89399 0.90670 0.89436 0.90058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16
2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16
3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16
4 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16
8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16
9 N -0.71 -17.01 3.85 -53.32 -0.21 -17.22 16
10 C 0.17 3.21 2.24 -67.82 -0.15 3.06 16
11 H 0.06 1.31 7.79 -51.93 -0.40 0.90 16
12 C 0.10 1.71 6.02 -3.72 -0.02 1.68 16
13 N -0.61 -8.33 2.97 -172.78 -0.51 -8.85 16
14 C 0.51 7.61 7.69 -10.99 -0.08 7.53 16
15 O -0.52 -10.47 15.01 5.55 0.08 -10.38 16
16 C -0.06 -0.62 4.64 -29.04 -0.13 -0.75 16
17 C 0.02 0.28 6.10 -82.10 -0.50 -0.22 16
18 C -0.23 -2.00 11.12 -39.38 -0.44 -2.44 16
19 C -0.07 -0.52 12.30 29.74 0.37 -0.16 16
20 O 0.10 1.26 11.20 17.17 0.19 1.45 16
21 N -0.34 -4.88 11.46 33.42 0.38 -4.50 16
22 C 0.11 1.01 6.34 -3.71 -0.02 0.98 16
23 C -0.13 -1.35 5.11 -26.62 -0.14 -1.48 16
24 C -0.14 -2.07 1.81 -90.58 -0.16 -2.24 16
25 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16
26 C 0.46 7.69 2.68 37.16 0.10 7.79 16
27 F -0.19 -3.29 16.34 2.25 0.04 -3.25 16
28 F -0.15 -3.25 14.67 2.25 0.03 -3.22 16
29 F -0.20 -2.99 16.77 2.25 0.04 -2.95 16
30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
31 H 0.39 9.86 6.55 -40.82 -0.27 9.59 16
32 H 0.10 2.11 7.00 -51.93 -0.36 1.74 16
33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.11 0.76 7.69 -51.93 -0.40 0.36 16
35 H 0.11 0.84 7.94 -51.93 -0.41 0.43 16
36 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16
37 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16
38 H 0.09 0.50 5.93 -51.93 -0.31 0.19 16
39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.09 0.71 7.77 -51.93 -0.40 0.31 16
41 H 0.08 0.86 7.84 -51.93 -0.41 0.46 16
LS Contribution 352.89 15.07 5.32 5.32
Total: -1.00 -35.94 352.89 -5.00 -40.94
By element:
Atomic # 1 Polarization: 9.77 SS G_CDS: -4.63 Total: 5.15 kcal
Atomic # 6 Polarization: 8.08 SS G_CDS: -1.44 Total: 6.65 kcal
Atomic # 7 Polarization: -57.72 SS G_CDS: 0.39 Total: -57.33 kcal
Atomic # 8 Polarization: -9.21 SS G_CDS: 0.28 Total: -8.94 kcal
Atomic # 9 Polarization: -9.53 SS G_CDS: 0.11 Total: -9.43 kcal
Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -35.94 -5.00 -40.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000998240664.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal
(2) G-P(sol) polarization free energy of solvation -35.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.832 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds