Wall clock time and date at job start Wed Apr 1 2020 04:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99671 * 2 1 4 4 H 1.48505 * 109.46756 * 270.00013 * 3 2 1 5 5 H 1.48495 * 109.47453 * 29.99702 * 3 2 1 6 6 H 1.48497 * 109.47130 * 150.00240 * 3 2 1 7 7 C 1.38811 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00227 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49528 * 35.06907 * 10 9 7 12 12 C 1.53178 * 109.49980 * 275.00202 * 10 9 7 13 13 N 1.46927 * 108.77792 * 185.41131 * 12 10 9 14 14 C 1.34777 * 120.63332 * 233.63135 * 13 12 10 15 15 O 1.21288 * 119.99622 * 359.97435 * 14 13 12 16 16 C 1.50699 * 120.00134 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47329 * 179.97438 * 16 14 13 18 18 C 1.41375 * 126.80298 * 124.70211 * 17 16 14 19 19 C 1.35451 * 103.98795 * 179.89202 * 18 17 16 20 20 O 1.34042 * 106.44468 * 0.37366 * 19 18 17 21 21 N 1.20920 * 111.56411 * 359.74844 * 20 19 18 22 22 C 1.46928 * 118.73615 * 53.60840 * 13 12 10 23 23 C 1.53187 * 108.77623 * 306.39196 * 22 13 12 24 24 C 1.53036 * 109.33909 * 54.61900 * 23 22 13 25 25 H 1.08998 * 109.46343 * 58.67009 * 24 23 22 26 26 C 1.52999 * 109.46209 * 178.63045 * 24 23 22 27 27 F 1.39905 * 109.47026 * 60.00082 * 26 24 23 28 28 F 1.39900 * 109.47564 * 180.02562 * 26 24 23 29 29 F 1.39900 * 109.47185 * 299.99903 * 26 24 23 30 30 H 0.96995 * 120.00329 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99995 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.58877 * 65.62181 * 12 10 9 33 33 H 1.09003 * 109.70714 * 305.26747 * 12 10 9 34 34 H 1.08999 * 109.46873 * 299.99877 * 16 14 13 35 35 H 1.08996 * 109.46994 * 60.00017 * 16 14 13 36 36 H 1.08004 * 128.00679 * 0.03406 * 18 17 16 37 37 H 1.08000 * 126.77780 * 180.14659 * 19 18 17 38 38 H 1.09000 * 109.58414 * 186.60362 * 22 13 12 39 39 H 1.08999 * 109.58551 * 66.18287 * 22 13 12 40 40 H 1.09002 * 109.49796 * 174.58834 * 23 22 13 41 41 H 1.09000 * 109.49812 * 294.65558 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9689 -3.5515 0.5880 12 6 2.4218 -4.0359 -1.4406 13 7 3.0391 -5.3692 -1.4367 14 6 4.2432 -5.5702 -2.0079 15 8 4.8275 -4.6457 -2.5322 16 6 4.8634 -6.9436 -1.9952 17 6 6.1980 -6.8987 -2.6938 18 6 7.4442 -7.3075 -2.1662 19 6 8.3193 -7.0711 -3.1728 20 8 7.6047 -6.5581 -4.1842 21 7 6.4325 -6.4702 -3.9004 22 6 2.3190 -6.4792 -0.7978 23 6 1.9566 -6.0726 0.6340 24 6 1.1807 -4.7538 0.6053 25 1 0.2815 -4.8745 0.0012 26 6 0.7876 -4.3625 2.0312 27 9 1.9414 -4.2081 2.8073 28 9 0.0778 -3.1572 2.0052 29 9 -0.0163 -5.3647 2.5850 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.1264 -3.3083 -1.8433 33 1 1.5217 -4.0518 -2.0551 34 1 5.0032 -7.2696 -0.9645 35 1 4.2068 -7.6436 -2.5118 36 1 7.6505 -7.7161 -1.1880 37 1 9.3833 -7.2557 -3.1613 38 1 2.9557 -7.3636 -0.7764 39 1 1.4091 -6.6950 -1.3578 40 1 1.3391 -6.8482 1.0872 41 1 2.8681 -5.9457 1.2180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998240664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:35 Heat of formation + Delta-G solvation = -102.828029 kcal Electronic energy + Delta-G solvation = -31777.984221 eV Core-core repulsion = 26861.155553 eV Total energy + Delta-G solvation = -4916.828667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.56298 -47.13204 -46.87630 -45.03422 -40.12728 -37.71479 -34.77646 -34.63476 -32.94680 -31.88527 -31.41201 -29.87694 -28.52395 -26.67067 -24.18273 -23.45878 -23.25763 -22.05527 -21.77729 -20.44873 -19.08603 -17.92975 -17.88074 -17.80257 -17.63852 -17.44286 -17.06238 -16.49530 -15.87243 -15.56540 -15.10075 -14.64956 -14.32635 -14.00521 -13.84579 -13.72075 -13.53937 -13.47178 -13.39329 -13.28162 -13.07573 -13.04096 -12.98145 -12.92753 -12.61618 -12.41230 -12.23563 -11.50775 -11.37399 -11.26179 -11.05987 -10.81902 -10.80482 -10.38467 -10.32652 -10.02403 -9.81497 -9.75358 -9.60704 -9.13586 -8.52020 -7.08459 -5.80936 -3.13097 1.42253 2.06397 2.69290 3.03236 3.17728 3.24147 3.44792 3.50227 3.51612 3.93965 4.18062 4.26806 4.29977 4.41117 4.57074 4.61047 4.81113 4.91200 4.96126 5.00930 5.08259 5.12908 5.24426 5.26859 5.37281 5.40526 5.52148 5.54907 5.67644 5.73868 5.83386 5.84116 5.98051 6.04992 6.47965 6.50723 6.76057 7.47642 7.68531 8.20405 8.26885 8.34459 9.47792 9.95062 10.30817 11.40421 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003640 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.582678 B = 7691.340967 C = 9694.184114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.002 4.002 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.173 3.827 11 H 0.065 0.935 12 C 0.097 3.903 13 N -0.611 5.611 14 C 0.513 3.487 15 O -0.522 6.522 16 C -0.062 4.062 17 C 0.023 3.977 18 C -0.229 4.229 19 C -0.066 4.066 20 O 0.104 5.896 21 N -0.335 5.335 22 C 0.112 3.888 23 C -0.131 4.131 24 C -0.142 4.142 25 H 0.111 0.889 26 C 0.457 3.543 27 F -0.186 7.186 28 F -0.154 7.154 29 F -0.199 7.199 30 H 0.256 0.744 31 H 0.390 0.610 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.171 0.829 37 H 0.215 0.785 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -21.714 -0.328 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.061 3.939 11 H 0.083 0.917 12 C -0.027 4.027 13 N -0.346 5.346 14 C 0.299 3.701 15 O -0.397 6.397 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.250 4.250 19 C -0.147 4.147 20 O 0.034 5.966 21 N -0.036 5.036 22 C -0.012 4.012 23 C -0.170 4.170 24 C -0.163 4.163 25 H 0.129 0.871 26 C 0.403 3.597 27 F -0.168 7.168 28 F -0.135 7.135 29 F -0.181 7.181 30 H 0.066 0.934 31 H 0.227 0.773 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.189 0.811 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.544 -20.486 -1.530 22.249 hybrid contribution 0.322 0.604 1.162 1.348 sum 8.866 -19.883 -0.368 21.773 Atomic orbital electron populations 1.69665 1.05099 1.25863 1.56567 1.24729 0.95467 0.97701 1.02024 0.86203 0.78763 0.83672 0.77615 1.21541 1.21710 1.20644 1.19170 0.91030 0.83634 1.44104 0.90997 1.42502 1.06069 0.99114 1.87946 1.20487 0.94387 0.85389 0.93667 0.91745 1.22749 0.98384 0.81957 0.99649 1.48290 1.18839 1.10971 1.56519 1.20248 0.81051 0.90127 0.78684 1.90772 1.61181 1.43936 1.43832 1.20057 0.91306 0.97084 1.01835 1.22905 0.96840 1.01868 0.92018 1.22683 0.91533 1.08442 1.02361 1.25988 1.00294 1.00359 0.88065 1.84885 1.13745 1.60178 1.37748 1.73908 0.95511 1.16802 1.17341 1.21680 0.97625 0.89357 0.92513 1.21970 1.01360 0.95782 0.97913 1.22831 1.03207 0.98659 0.91583 0.87083 1.20411 0.74757 0.75312 0.89220 1.93132 1.50094 1.95615 1.77948 1.93321 1.78481 1.45179 1.96513 1.93116 1.74985 1.61972 1.88009 0.93379 0.77348 0.88259 0.91550 0.86712 0.87132 0.81128 0.76852 0.89399 0.90670 0.89436 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.01 3.85 -53.32 -0.21 -17.22 16 10 C 0.17 3.21 2.24 -67.82 -0.15 3.06 16 11 H 0.06 1.31 7.79 -51.93 -0.40 0.90 16 12 C 0.10 1.71 6.02 -3.72 -0.02 1.68 16 13 N -0.61 -8.33 2.97 -172.78 -0.51 -8.85 16 14 C 0.51 7.61 7.69 -10.99 -0.08 7.53 16 15 O -0.52 -10.47 15.01 5.55 0.08 -10.38 16 16 C -0.06 -0.62 4.64 -29.04 -0.13 -0.75 16 17 C 0.02 0.28 6.10 -82.10 -0.50 -0.22 16 18 C -0.23 -2.00 11.12 -39.38 -0.44 -2.44 16 19 C -0.07 -0.52 12.30 29.74 0.37 -0.16 16 20 O 0.10 1.26 11.20 17.17 0.19 1.45 16 21 N -0.34 -4.88 11.46 33.42 0.38 -4.50 16 22 C 0.11 1.01 6.34 -3.71 -0.02 0.98 16 23 C -0.13 -1.35 5.11 -26.62 -0.14 -1.48 16 24 C -0.14 -2.07 1.81 -90.58 -0.16 -2.24 16 25 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 26 C 0.46 7.69 2.68 37.16 0.10 7.79 16 27 F -0.19 -3.29 16.34 2.25 0.04 -3.25 16 28 F -0.15 -3.25 14.67 2.25 0.03 -3.22 16 29 F -0.20 -2.99 16.77 2.25 0.04 -2.95 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 9.86 6.55 -40.82 -0.27 9.59 16 32 H 0.10 2.11 7.00 -51.93 -0.36 1.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.11 0.76 7.69 -51.93 -0.40 0.36 16 35 H 0.11 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.09 0.50 5.93 -51.93 -0.31 0.19 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.71 7.77 -51.93 -0.40 0.31 16 41 H 0.08 0.86 7.84 -51.93 -0.41 0.46 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -35.94 352.89 -5.00 -40.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.63 Total: 5.15 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.44 Total: 6.65 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.39 Total: -57.33 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.28 Total: -8.94 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 0.11 Total: -9.43 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.94 -5.00 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998240664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds