Wall clock time and date at job start Wed Apr 1 2020 04:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99671 * 2 1 4 4 H 1.48505 * 109.46756 * 270.00013 * 3 2 1 5 5 H 1.48495 * 109.47453 * 29.99702 * 3 2 1 6 6 H 1.48497 * 109.47130 * 150.00240 * 3 2 1 7 7 C 1.38811 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00227 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49528 * 35.06907 * 10 9 7 12 12 C 1.53178 * 109.49980 * 275.00202 * 10 9 7 13 13 N 1.46927 * 108.77792 * 185.41131 * 12 10 9 14 14 C 1.34777 * 120.63332 * 233.63135 * 13 12 10 15 15 O 1.21288 * 119.99622 * 359.97435 * 14 13 12 16 16 C 1.50699 * 120.00134 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47329 * 179.97438 * 16 14 13 18 18 C 1.41375 * 126.80298 * 124.70211 * 17 16 14 19 19 C 1.35451 * 103.98795 * 179.89202 * 18 17 16 20 20 O 1.34042 * 106.44468 * 0.37366 * 19 18 17 21 21 N 1.20920 * 111.56411 * 359.74844 * 20 19 18 22 22 C 1.46928 * 118.73615 * 53.60840 * 13 12 10 23 23 C 1.53187 * 108.77623 * 306.39196 * 22 13 12 24 24 C 1.53036 * 109.33909 * 54.61900 * 23 22 13 25 25 H 1.08998 * 109.46343 * 58.67009 * 24 23 22 26 26 C 1.52999 * 109.46209 * 178.63045 * 24 23 22 27 27 F 1.39905 * 109.47026 * 60.00082 * 26 24 23 28 28 F 1.39900 * 109.47564 * 180.02562 * 26 24 23 29 29 F 1.39900 * 109.47185 * 299.99903 * 26 24 23 30 30 H 0.96995 * 120.00329 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99995 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.58877 * 65.62181 * 12 10 9 33 33 H 1.09003 * 109.70714 * 305.26747 * 12 10 9 34 34 H 1.08999 * 109.46873 * 299.99877 * 16 14 13 35 35 H 1.08996 * 109.46994 * 60.00017 * 16 14 13 36 36 H 1.08004 * 128.00679 * 0.03406 * 18 17 16 37 37 H 1.08000 * 126.77780 * 180.14659 * 19 18 17 38 38 H 1.09000 * 109.58414 * 186.60362 * 22 13 12 39 39 H 1.08999 * 109.58551 * 66.18287 * 22 13 12 40 40 H 1.09002 * 109.49796 * 174.58834 * 23 22 13 41 41 H 1.09000 * 109.49812 * 294.65558 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9689 -3.5515 0.5880 12 6 2.4218 -4.0359 -1.4406 13 7 3.0391 -5.3692 -1.4367 14 6 4.2432 -5.5702 -2.0079 15 8 4.8275 -4.6457 -2.5322 16 6 4.8634 -6.9436 -1.9952 17 6 6.1980 -6.8987 -2.6938 18 6 7.4442 -7.3075 -2.1662 19 6 8.3193 -7.0711 -3.1728 20 8 7.6047 -6.5581 -4.1842 21 7 6.4325 -6.4702 -3.9004 22 6 2.3190 -6.4792 -0.7978 23 6 1.9566 -6.0726 0.6340 24 6 1.1807 -4.7538 0.6053 25 1 0.2815 -4.8745 0.0012 26 6 0.7876 -4.3625 2.0312 27 9 1.9414 -4.2081 2.8073 28 9 0.0778 -3.1572 2.0052 29 9 -0.0163 -5.3647 2.5850 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.1264 -3.3083 -1.8433 33 1 1.5217 -4.0518 -2.0551 34 1 5.0032 -7.2696 -0.9645 35 1 4.2068 -7.6436 -2.5118 36 1 7.6505 -7.7161 -1.1880 37 1 9.3833 -7.2557 -3.1613 38 1 2.9557 -7.3636 -0.7764 39 1 1.4091 -6.6950 -1.3578 40 1 1.3391 -6.8482 1.0872 41 1 2.8681 -5.9457 1.2180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998240664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:34 Heat of formation + Delta-G solvation = -128.209675 kcal Electronic energy + Delta-G solvation = -31779.084851 eV Core-core repulsion = 26861.155553 eV Total energy + Delta-G solvation = -4917.929298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.94218 -48.45625 -48.36629 -45.81546 -41.27793 -38.98981 -36.27857 -35.55048 -34.39376 -33.05164 -32.56620 -31.02376 -29.86034 -27.94845 -26.02593 -24.56615 -24.01055 -23.45583 -22.73215 -21.68769 -20.14244 -19.41876 -19.09465 -19.06263 -18.78434 -18.57738 -18.36211 -17.65577 -16.97268 -16.80816 -16.48232 -15.85939 -15.68429 -15.49087 -15.13986 -15.11154 -14.83458 -14.78931 -14.63051 -14.50260 -14.46004 -14.23605 -14.08061 -13.96808 -13.74479 -13.61983 -13.23786 -13.08583 -12.94328 -12.64310 -12.29441 -12.20475 -12.15438 -12.09470 -11.76029 -11.60482 -11.20035 -11.11772 -10.72962 -10.46964 -9.80744 -9.05532 -7.98651 -5.28605 0.74613 1.31754 1.42680 1.43901 1.51658 1.60313 1.91755 2.02053 2.50671 2.58597 2.91200 3.09811 3.13632 3.24221 3.35222 3.53927 3.67685 3.78352 3.91188 4.08427 4.14608 4.18335 4.24284 4.29547 4.43330 4.46141 4.47265 4.57994 4.66346 4.70264 4.84096 4.90933 4.93772 5.05621 5.20910 5.25006 5.40721 5.52243 6.21829 6.41548 7.17550 7.30618 7.48294 7.97214 8.23085 9.23192 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003640 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.582678 B = 7691.340967 C = 9694.184114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.059 4.059 3 Si 0.962 3.038 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.175 3.825 11 H 0.044 0.956 12 C 0.112 3.888 13 N -0.608 5.608 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.053 4.053 17 C 0.003 3.997 18 C -0.232 4.232 19 C -0.058 4.058 20 O 0.081 5.919 21 N -0.391 5.391 22 C 0.106 3.894 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.125 0.875 26 C 0.454 3.546 27 F -0.193 7.193 28 F -0.185 7.185 29 F -0.184 7.184 30 H 0.252 0.748 31 H 0.382 0.618 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.206 0.794 37 H 0.260 0.740 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 -25.447 0.654 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.253 4.253 3 Si 0.792 3.208 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.366 5.366 10 C 0.065 3.935 11 H 0.062 0.938 12 C -0.014 4.014 13 N -0.341 5.341 14 C 0.293 3.707 15 O -0.467 6.467 16 C -0.093 4.093 17 C -0.156 4.156 18 C -0.254 4.254 19 C -0.138 4.138 20 O 0.015 5.985 21 N -0.096 5.096 22 C -0.014 4.014 23 C -0.163 4.163 24 C -0.153 4.153 25 H 0.143 0.857 26 C 0.399 3.601 27 F -0.175 7.175 28 F -0.166 7.166 29 F -0.165 7.165 30 H 0.061 0.939 31 H 0.217 0.783 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.223 0.777 37 H 0.276 0.724 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.143 0.857 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.587 -24.305 -0.535 26.133 hybrid contribution 0.085 1.663 0.899 1.893 sum 9.671 -22.641 0.365 24.623 Atomic orbital electron populations 1.69787 1.06179 1.26033 1.58559 1.25392 0.96263 1.00487 1.03118 0.85322 0.77806 0.80361 0.77352 1.21609 1.21696 1.20062 1.19385 0.90870 0.85273 1.42139 0.91798 1.42565 1.05779 1.00122 1.88180 1.20539 0.93997 0.84859 0.94149 0.93775 1.22107 0.97263 0.83833 0.98190 1.48318 1.18891 1.10362 1.56524 1.21229 0.80625 0.91579 0.77231 1.90750 1.62867 1.46479 1.46570 1.20231 0.90617 0.93804 1.04616 1.23503 0.98808 1.01502 0.91774 1.23152 0.90077 1.08296 1.03827 1.26937 1.01994 0.98137 0.86774 1.84810 1.13542 1.60914 1.39273 1.73909 0.96882 1.19312 1.19461 1.22152 0.99170 0.88892 0.91231 1.22078 1.01289 0.93769 0.99197 1.22821 1.03532 0.99223 0.89688 0.85691 1.20747 0.74403 0.74540 0.90360 1.93116 1.50415 1.95646 1.78301 1.93263 1.79249 1.47427 1.96703 1.93137 1.74566 1.60925 1.87919 0.93895 0.78281 0.92929 0.91603 0.82320 0.84093 0.77712 0.72443 0.84477 0.88562 0.85734 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.55 13.06 21.65 0.28 -58.27 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.96 47.92 29.55 68.60 2.03 49.95 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.24 -13.88 9.93 84.03 0.83 -13.05 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.72 -35.68 3.85 -322.59 -1.24 -36.92 16 10 C 0.18 6.58 2.24 45.07 0.10 6.68 16 11 H 0.04 1.83 7.79 -2.39 -0.02 1.82 16 12 C 0.11 4.02 6.02 86.36 0.52 4.54 16 13 N -0.61 -15.46 2.97 -818.92 -2.43 -17.89 16 14 C 0.50 14.37 7.69 87.66 0.67 15.05 16 15 O -0.59 -24.39 15.01 -3.05 -0.05 -24.44 16 16 C -0.05 -0.86 4.64 29.10 0.14 -0.73 16 17 C 0.00 0.07 6.10 43.58 0.27 0.34 16 18 C -0.23 -3.34 11.12 22.40 0.25 -3.09 16 19 C -0.06 -0.79 12.30 67.18 0.83 0.04 16 20 O 0.08 1.94 11.20 71.62 0.80 2.74 16 21 N -0.39 -11.42 11.46 -49.55 -0.57 -11.99 16 22 C 0.11 1.40 6.34 86.36 0.55 1.94 16 23 C -0.12 -2.02 5.11 30.67 0.16 -1.86 16 24 C -0.13 -3.61 1.81 -10.77 -0.02 -3.63 16 25 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 26 C 0.45 14.74 2.68 71.98 0.19 14.93 16 27 F -0.19 -6.66 16.34 44.97 0.73 -5.92 16 28 F -0.19 -7.93 14.67 44.97 0.66 -7.27 16 29 F -0.18 -5.06 16.77 44.97 0.75 -4.31 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.38 19.95 6.55 -92.70 -0.61 19.34 16 32 H 0.05 2.38 7.00 -2.39 -0.02 2.37 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.16 1.13 7.69 -2.39 -0.02 1.11 16 35 H 0.14 1.45 7.94 -2.39 -0.02 1.43 16 36 H 0.21 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.26 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.14 0.56 5.93 -2.39 -0.01 0.55 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.24 7.77 -2.39 -0.02 1.23 16 41 H 0.08 1.38 7.84 -2.39 -0.02 1.37 16 Total: -1.00 -87.02 352.89 6.41 -80.61 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.49 Total: 15.53 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 4.95 Total: 18.18 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -3.96 Total: -125.07 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.76 Total: -21.69 kcal Atomic # 9 Polarization: -19.65 SS G_CDS: 2.15 Total: -17.50 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -87.02 6.41 -80.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998240664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.601 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds