Wall clock time and date at job start Wed Apr 1 2020 04:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33696 * 126.27502 * 2 1 4 4 C 1.30623 * 108.99227 * 180.26151 * 3 2 1 5 5 O 1.33660 * 109.15525 * 359.76421 * 4 3 2 6 6 C 1.35343 * 107.68525 * 0.02562 * 5 4 3 7 7 C 1.46730 * 126.64138 * 179.97438 * 6 5 4 8 8 O 1.21682 * 119.99575 * 172.50765 * 7 6 5 9 9 N 1.34771 * 120.00032 * 352.51338 * 7 6 5 10 10 C 1.46924 * 120.63228 * 352.85907 * 9 7 6 11 11 C 1.53193 * 108.77463 * 233.58513 * 10 9 7 12 12 C 1.53040 * 109.31400 * 305.36507 * 11 10 9 13 13 H 1.09003 * 109.44820 * 301.35056 * 12 11 10 14 14 C 1.52999 * 109.46183 * 181.38624 * 12 11 10 15 15 F 1.39901 * 109.47069 * 299.93080 * 14 12 11 16 16 F 1.39899 * 109.47283 * 59.92824 * 14 12 11 17 17 F 1.39900 * 109.46984 * 179.97438 * 14 12 11 18 18 C 1.53038 * 109.53979 * 61.36009 * 12 11 10 19 19 H 1.09001 * 109.50235 * 178.68537 * 18 12 11 20 20 N 1.46506 * 109.49672 * 58.62048 * 18 12 11 21 21 C 1.36932 * 120.00038 * 155.06342 * 20 18 12 22 22 H 1.07999 * 119.99884 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00163 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99896 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47335 * 90.00027 * 25 23 21 27 27 H 1.48507 * 109.47151 * 209.99424 * 25 23 21 28 28 H 1.48496 * 109.47152 * 329.99490 * 25 23 21 29 29 C 1.46927 * 120.63082 * 172.83124 * 9 7 6 30 30 H 1.09007 * 109.46576 * 270.13500 * 1 2 3 31 31 H 1.08996 * 109.47035 * 30.13144 * 1 2 3 32 32 H 1.08993 * 109.47332 * 150.13819 * 1 2 3 33 33 H 1.07998 * 125.41530 * 179.78831 * 4 3 2 34 34 H 1.09000 * 109.58779 * 113.79817 * 10 9 7 35 35 H 1.09005 * 109.70588 * 353.44046 * 10 9 7 36 36 H 1.08995 * 109.50100 * 185.41033 * 11 10 9 37 37 H 1.09008 * 109.52555 * 65.32805 * 11 10 9 38 38 H 0.96995 * 119.99547 * 335.07005 * 20 18 12 39 39 H 0.96996 * 120.00541 * 180.02562 * 24 23 21 40 40 H 1.09005 * 109.58494 * 6.62791 * 29 9 7 41 41 H 1.09001 * 109.58738 * 246.20447 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0056 5 8 3.5890 -0.6461 -0.0042 6 6 2.3137 -1.0992 0.0020 7 6 1.8826 -2.5017 0.0051 8 8 0.7058 -2.7762 0.1482 9 7 2.7901 -3.4859 -0.1504 10 6 4.1871 -3.1711 -0.4791 11 6 4.5897 -3.9610 -1.7283 12 6 4.3189 -5.4491 -1.4954 13 1 4.8831 -5.7891 -0.6270 14 6 4.7520 -6.2451 -2.7282 15 9 4.0275 -5.8094 -3.8428 16 9 6.1185 -6.0481 -2.9541 17 9 4.5050 -7.6056 -2.5152 18 6 2.8240 -5.6648 -1.2485 19 1 2.6284 -6.7276 -1.1058 20 7 2.0627 -5.1779 -2.4016 21 6 0.8209 -5.6900 -2.6678 22 1 0.4029 -6.4530 -2.0279 23 6 0.0998 -5.2291 -3.7607 24 7 0.6094 -4.2996 -4.5408 25 14 -1.5945 -5.9271 -4.1234 26 1 -2.6233 -5.1206 -3.4188 27 1 -1.8460 -5.8812 -5.5862 28 1 -1.6611 -7.3342 -3.6535 29 6 2.4014 -4.8942 0.0062 30 1 -0.3633 0.0024 1.0278 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8912 -0.5116 33 1 4.4044 1.3443 -0.0103 34 1 4.8309 -3.4523 0.3543 35 1 4.2871 -2.1032 -0.6739 36 1 5.6508 -3.8111 -1.9273 37 1 4.0070 -3.6145 -2.5820 38 1 2.4384 -4.4930 -2.9765 39 1 0.1054 -3.9772 -5.3043 40 1 1.3207 -4.9633 0.1308 41 1 2.8996 -5.3159 0.8792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998254142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:06 Heat of formation + Delta-G solvation = -131.918353 kcal Electronic energy + Delta-G solvation = -33055.205303 eV Core-core repulsion = 28137.115184 eV Total energy + Delta-G solvation = -4918.090118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.57118 -47.15405 -46.87766 -43.46688 -39.82443 -37.63742 -35.45579 -34.19054 -32.80745 -31.70435 -31.10295 -28.87515 -28.15933 -26.59255 -24.27594 -23.69426 -23.09519 -22.49772 -21.67124 -20.36114 -19.14810 -17.96837 -17.86210 -17.65843 -17.15880 -16.93721 -16.82277 -16.37979 -15.75718 -14.96997 -14.66073 -14.61451 -14.37573 -14.01065 -13.82359 -13.57061 -13.49093 -13.41650 -13.27915 -13.11849 -13.06431 -13.04393 -12.83441 -12.65599 -12.48070 -12.22214 -12.03272 -11.68270 -11.13587 -11.08989 -10.91259 -10.86951 -10.80289 -10.51272 -10.39587 -10.03278 -9.81835 -9.68643 -9.08299 -8.90961 -8.35689 -6.98421 -5.75037 -3.05082 0.90914 2.44307 2.45673 3.14254 3.19571 3.44060 3.47559 3.52353 3.53261 4.01097 4.22077 4.32003 4.50024 4.61658 4.64397 4.78888 4.92400 5.11913 5.20628 5.28255 5.35316 5.35771 5.44601 5.49549 5.68214 5.73909 5.78461 5.83619 5.91075 5.94443 6.00413 6.11994 6.20958 6.39165 6.42834 6.46691 6.80300 7.43176 7.63437 7.70730 8.31681 8.40067 9.53856 10.02604 10.37647 11.46870 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.005512 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.849986 B = 5078.369764 C = 7165.218363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.074 3.926 3 N -0.492 5.492 4 C 0.184 3.816 5 O -0.188 6.188 6 C -0.100 4.100 7 C 0.608 3.392 8 O -0.498 6.498 9 N -0.588 5.588 10 C 0.107 3.893 11 C -0.133 4.133 12 C -0.139 4.139 13 H 0.108 0.892 14 C 0.456 3.544 15 F -0.154 7.154 16 F -0.199 7.199 17 F -0.187 7.187 18 C 0.163 3.837 19 H 0.075 0.925 20 N -0.709 5.709 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.003 4.003 24 N -0.926 5.926 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.096 3.904 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.104 0.896 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 5.207 10.658 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.222 5.222 4 C -0.041 4.041 5 O -0.075 6.075 6 C -0.154 4.154 7 C 0.394 3.606 8 O -0.374 6.374 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.160 4.160 13 H 0.126 0.874 14 C 0.402 3.598 15 F -0.135 7.135 16 F -0.180 7.180 17 F -0.169 7.169 18 C 0.051 3.949 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.199 4.199 24 N -0.573 5.573 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.029 4.029 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.225 0.775 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.948 5.510 10.651 16.238 hybrid contribution -0.136 -0.734 -0.762 1.067 sum 10.812 4.777 9.889 15.411 Atomic orbital electron populations 1.20368 0.85356 1.04561 1.03404 1.22025 0.98397 0.86325 0.98169 1.70323 1.01356 1.31626 1.18866 1.28312 0.97576 0.80254 0.97972 1.84622 1.29728 1.23753 1.69419 1.23169 0.80987 0.96579 1.14684 1.16329 0.85472 0.81006 0.77767 1.90881 1.15574 1.81070 1.49862 1.47675 1.08912 1.06750 1.68709 1.21951 0.82053 1.01206 0.96387 1.21949 1.02560 0.92538 1.00116 1.22764 1.01737 0.96534 0.94964 0.87369 1.20437 0.73956 0.78364 0.87047 1.93320 1.76740 1.88861 1.54600 1.93116 1.34220 1.94966 1.95737 1.93139 1.94002 1.34730 1.94999 1.20594 0.86477 0.98032 0.89805 0.90702 1.42469 1.17675 1.47247 1.27738 1.19104 0.92599 1.17088 1.08388 0.91136 1.24675 0.98486 0.98928 0.97844 1.69654 1.37932 1.31680 1.18073 0.86229 0.84663 0.78431 0.77052 1.21657 1.21921 1.20762 1.22586 1.03416 0.78902 0.97950 0.90206 0.90681 0.88430 0.73203 0.91141 0.87977 0.89890 0.89154 0.77511 0.93589 0.87734 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.80 36.01 0.35 -0.82 16 2 C 0.07 1.16 7.16 -82.46 -0.59 0.57 16 3 N -0.49 -6.84 11.26 -10.88 -0.12 -6.96 16 4 C 0.18 1.89 13.21 52.25 0.69 2.58 16 5 O -0.19 -2.33 7.45 4.44 0.03 -2.29 16 6 C -0.10 -1.58 6.79 -36.84 -0.25 -1.83 16 7 C 0.61 11.04 7.65 -12.83 -0.10 10.94 16 8 O -0.50 -10.59 14.33 5.21 0.07 -10.51 16 9 N -0.59 -9.41 2.89 -174.29 -0.50 -9.91 16 10 C 0.11 1.34 6.12 -3.71 -0.02 1.31 16 11 C -0.13 -1.81 4.95 -26.61 -0.13 -1.94 16 12 C -0.14 -2.01 2.01 -90.58 -0.18 -2.19 16 13 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.46 7.60 2.69 37.16 0.10 7.70 16 15 F -0.15 -3.22 14.40 2.25 0.03 -3.18 16 16 F -0.20 -3.01 16.77 2.25 0.04 -2.97 16 17 F -0.19 -3.24 16.77 2.25 0.04 -3.20 16 18 C 0.16 2.90 2.45 -67.81 -0.17 2.73 16 19 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 20 N -0.71 -16.49 3.68 -53.31 -0.20 -16.68 16 21 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 24 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 25 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.10 1.57 6.05 -3.71 -0.02 1.55 16 30 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.67 6.66 -51.93 -0.35 1.32 16 33 H 0.25 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.25 4.27 -52.71 -0.22 1.02 16 36 H 0.08 0.92 7.76 -51.93 -0.40 0.51 16 37 H 0.09 1.55 6.11 -51.92 -0.32 1.24 16 38 H 0.39 9.76 4.94 -40.82 -0.20 9.56 16 39 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.10 2.03 7.00 -51.93 -0.36 1.66 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -33.77 345.15 -4.61 -38.38 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.34 Total: 7.62 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -0.57 Total: 13.81 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.10 Total: -60.54 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.11 Total: -12.81 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 0.11 Total: -9.35 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.77 -4.61 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998254142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.534 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds