Wall clock time and date at job start Wed Apr 1 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33696 * 126.27502 * 2 1 4 4 C 1.30623 * 108.99227 * 180.26151 * 3 2 1 5 5 O 1.33660 * 109.15525 * 359.76421 * 4 3 2 6 6 C 1.35343 * 107.68525 * 0.02562 * 5 4 3 7 7 C 1.46730 * 126.64138 * 179.97438 * 6 5 4 8 8 O 1.21682 * 119.99575 * 172.50765 * 7 6 5 9 9 N 1.34771 * 120.00032 * 352.51338 * 7 6 5 10 10 C 1.46924 * 120.63228 * 352.85907 * 9 7 6 11 11 C 1.53193 * 108.77463 * 233.58513 * 10 9 7 12 12 C 1.53040 * 109.31400 * 305.36507 * 11 10 9 13 13 H 1.09003 * 109.44820 * 301.35056 * 12 11 10 14 14 C 1.52999 * 109.46183 * 181.38624 * 12 11 10 15 15 F 1.39901 * 109.47069 * 299.93080 * 14 12 11 16 16 F 1.39899 * 109.47283 * 59.92824 * 14 12 11 17 17 F 1.39900 * 109.46984 * 179.97438 * 14 12 11 18 18 C 1.53038 * 109.53979 * 61.36009 * 12 11 10 19 19 H 1.09001 * 109.50235 * 178.68537 * 18 12 11 20 20 N 1.46506 * 109.49672 * 58.62048 * 18 12 11 21 21 C 1.36932 * 120.00038 * 155.06342 * 20 18 12 22 22 H 1.07999 * 119.99884 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00163 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99896 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47335 * 90.00027 * 25 23 21 27 27 H 1.48507 * 109.47151 * 209.99424 * 25 23 21 28 28 H 1.48496 * 109.47152 * 329.99490 * 25 23 21 29 29 C 1.46927 * 120.63082 * 172.83124 * 9 7 6 30 30 H 1.09007 * 109.46576 * 270.13500 * 1 2 3 31 31 H 1.08996 * 109.47035 * 30.13144 * 1 2 3 32 32 H 1.08993 * 109.47332 * 150.13819 * 1 2 3 33 33 H 1.07998 * 125.41530 * 179.78831 * 4 3 2 34 34 H 1.09000 * 109.58779 * 113.79817 * 10 9 7 35 35 H 1.09005 * 109.70588 * 353.44046 * 10 9 7 36 36 H 1.08995 * 109.50100 * 185.41033 * 11 10 9 37 37 H 1.09008 * 109.52555 * 65.32805 * 11 10 9 38 38 H 0.96995 * 119.99547 * 335.07005 * 20 18 12 39 39 H 0.96996 * 120.00541 * 180.02562 * 24 23 21 40 40 H 1.09005 * 109.58494 * 6.62791 * 29 9 7 41 41 H 1.09001 * 109.58738 * 246.20447 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0056 5 8 3.5890 -0.6461 -0.0042 6 6 2.3137 -1.0992 0.0020 7 6 1.8826 -2.5017 0.0051 8 8 0.7058 -2.7762 0.1482 9 7 2.7901 -3.4859 -0.1504 10 6 4.1871 -3.1711 -0.4791 11 6 4.5897 -3.9610 -1.7283 12 6 4.3189 -5.4491 -1.4954 13 1 4.8831 -5.7891 -0.6270 14 6 4.7520 -6.2451 -2.7282 15 9 4.0275 -5.8094 -3.8428 16 9 6.1185 -6.0481 -2.9541 17 9 4.5050 -7.6056 -2.5152 18 6 2.8240 -5.6648 -1.2485 19 1 2.6284 -6.7276 -1.1058 20 7 2.0627 -5.1779 -2.4016 21 6 0.8209 -5.6900 -2.6678 22 1 0.4029 -6.4530 -2.0279 23 6 0.0998 -5.2291 -3.7607 24 7 0.6094 -4.2996 -4.5408 25 14 -1.5945 -5.9271 -4.1234 26 1 -2.6233 -5.1206 -3.4188 27 1 -1.8460 -5.8812 -5.5862 28 1 -1.6611 -7.3342 -3.6535 29 6 2.4014 -4.8942 0.0062 30 1 -0.3633 0.0024 1.0278 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8912 -0.5116 33 1 4.4044 1.3443 -0.0103 34 1 4.8309 -3.4523 0.3543 35 1 4.2871 -2.1032 -0.6739 36 1 5.6508 -3.8111 -1.9273 37 1 4.0070 -3.6145 -2.5820 38 1 2.4384 -4.4930 -2.9765 39 1 0.1054 -3.9772 -5.3043 40 1 1.3207 -4.9633 0.1308 41 1 2.8996 -5.3159 0.8792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998254142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:05 Heat of formation + Delta-G solvation = -157.282864 kcal Electronic energy + Delta-G solvation = -33056.305190 eV Core-core repulsion = 28137.115184 eV Total energy + Delta-G solvation = -4919.190006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.91839 -48.44982 -48.32907 -44.47814 -41.11130 -39.00321 -36.57390 -35.75678 -34.31889 -32.99272 -32.51420 -30.48919 -29.35154 -27.85485 -25.99925 -24.96041 -24.30129 -23.78231 -22.80521 -21.57201 -20.45462 -19.50988 -19.19239 -19.07847 -18.59811 -18.14133 -17.93328 -17.48132 -17.13424 -16.50749 -16.09586 -15.95361 -15.62865 -15.50996 -15.25681 -15.06053 -14.82010 -14.73642 -14.53980 -14.52165 -14.44035 -14.30582 -14.17930 -13.95825 -13.79331 -13.52072 -13.22563 -13.13399 -12.86052 -12.77416 -12.36115 -12.19582 -12.11677 -12.05438 -11.76596 -11.59561 -11.51432 -11.19507 -10.99376 -10.09999 -9.67297 -8.89472 -7.90476 -5.16220 -0.17503 1.38563 1.43508 1.44968 1.46358 1.52050 1.91660 1.94811 2.22310 2.56098 2.95625 3.08204 3.16398 3.24164 3.42736 3.54484 3.68943 3.77029 3.93647 3.95298 4.05163 4.23242 4.29256 4.35175 4.45434 4.61998 4.63141 4.65481 4.70808 4.77379 4.80233 4.81869 5.04828 5.13230 5.20606 5.34089 5.52566 5.58528 6.24588 6.29832 6.55981 7.02734 7.39405 8.11121 8.33082 9.32349 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.005512 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.849986 B = 5078.369764 C = 7165.218363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.524 5.524 4 C 0.221 3.779 5 O -0.180 6.180 6 C -0.125 4.125 7 C 0.598 3.402 8 O -0.548 6.548 9 N -0.588 5.588 10 C 0.106 3.894 11 C -0.128 4.128 12 C -0.127 4.127 13 H 0.159 0.841 14 C 0.452 3.548 15 F -0.186 7.186 16 F -0.187 7.187 17 F -0.193 7.193 18 C 0.155 3.845 19 H 0.074 0.926 20 N -0.719 5.719 21 C -0.226 4.226 22 H 0.073 0.927 23 C -0.069 4.069 24 N -0.962 5.962 25 Si 0.958 3.042 26 H -0.297 1.297 27 H -0.299 1.299 28 H -0.268 1.268 29 C 0.103 3.897 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.313 0.687 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.047 0.953 38 H 0.378 0.622 39 H 0.245 0.755 40 H 0.066 0.934 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.091 5.703 12.755 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 N -0.253 5.253 4 C -0.003 4.003 5 O -0.067 6.067 6 C -0.179 4.179 7 C 0.385 3.615 8 O -0.428 6.428 9 N -0.319 5.319 10 C -0.015 4.015 11 C -0.166 4.166 12 C -0.147 4.147 13 H 0.177 0.823 14 C 0.398 3.602 15 F -0.167 7.167 16 F -0.168 7.168 17 F -0.174 7.174 18 C 0.044 3.956 19 H 0.092 0.908 20 N -0.360 5.360 21 C -0.358 4.358 22 H 0.091 0.909 23 C -0.261 4.261 24 N -0.613 5.613 25 Si 0.789 3.211 26 H -0.225 1.225 27 H -0.226 1.226 28 H -0.193 1.193 29 C -0.021 4.021 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.328 0.672 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.213 0.787 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.198 5.969 12.794 20.022 hybrid contribution -0.956 -0.855 -1.339 1.854 sum 13.242 5.114 11.455 18.241 Atomic orbital electron populations 1.20285 0.85826 1.03428 1.03886 1.22181 0.98757 0.87185 0.97780 1.70352 1.02695 1.31146 1.21069 1.29720 0.98102 0.79741 0.92762 1.84605 1.27800 1.24746 1.69586 1.22650 0.82365 0.95526 1.17393 1.16700 0.85206 0.82298 0.77268 1.90844 1.17573 1.82133 1.52274 1.47831 1.10162 1.06120 1.67816 1.22248 0.80404 1.01546 0.97277 1.21942 1.03897 0.91708 0.99101 1.22796 0.99347 0.97004 0.95549 0.82296 1.20806 0.74191 0.78326 0.86883 1.93266 1.77700 1.89218 1.56526 1.93134 1.33096 1.94868 1.95708 1.93128 1.94097 1.35259 1.94925 1.20857 0.88346 0.97897 0.88455 0.90795 1.42562 1.17027 1.47023 1.29432 1.19454 0.93717 1.15575 1.07054 0.90930 1.25333 1.01660 1.00310 0.98804 1.69798 1.38955 1.33775 1.18781 0.85362 0.81232 0.78313 0.76224 1.22461 1.22552 1.19334 1.22393 1.01764 0.79377 0.98612 0.88990 0.89516 0.91638 0.67240 0.86616 0.87473 0.86427 0.93448 0.78737 0.94616 0.91554 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.37 9.80 71.24 0.70 -1.67 16 2 C 0.06 1.98 7.16 41.83 0.30 2.28 16 3 N -0.52 -13.46 11.26 -303.12 -3.41 -16.88 16 4 C 0.22 3.67 13.21 130.42 1.72 5.39 16 5 O -0.18 -3.89 7.45 -7.04 -0.05 -3.94 16 6 C -0.12 -3.86 6.79 24.05 0.16 -3.70 16 7 C 0.60 21.95 7.65 86.46 0.66 22.62 16 8 O -0.55 -24.63 14.33 -4.29 -0.06 -24.69 16 9 N -0.59 -17.97 2.89 -823.56 -2.38 -20.35 16 10 C 0.11 2.27 6.12 86.36 0.53 2.79 16 11 C -0.13 -3.11 4.95 30.67 0.15 -2.95 16 12 C -0.13 -3.27 2.01 -10.77 -0.02 -3.29 16 13 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 14 C 0.45 14.23 2.69 71.98 0.19 14.42 16 15 F -0.19 -7.83 14.40 44.97 0.65 -7.18 16 16 F -0.19 -5.11 16.77 44.97 0.75 -4.36 16 17 F -0.19 -6.34 16.77 44.97 0.75 -5.58 16 18 C 0.15 5.30 2.45 45.07 0.11 5.41 16 19 H 0.07 2.55 7.70 -2.39 -0.02 2.54 16 20 N -0.72 -34.09 3.68 -322.57 -1.19 -35.27 16 21 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 24 N -0.96 -60.19 13.06 21.65 0.28 -59.91 16 25 Si 0.96 48.40 29.55 68.60 2.03 50.43 16 26 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 27 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 29 C 0.10 3.21 6.05 86.36 0.52 3.73 16 30 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 2.44 6.66 -2.39 -0.02 2.42 16 33 H 0.31 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 2.24 4.27 -14.87 -0.06 2.18 16 36 H 0.12 2.06 7.76 -2.39 -0.02 2.05 16 37 H 0.05 1.60 6.11 -2.38 -0.01 1.59 16 38 H 0.38 19.63 4.94 -92.71 -0.46 19.18 16 39 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.07 2.62 7.00 -2.38 -0.02 2.60 16 41 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -80.63 345.15 4.30 -76.33 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.60 Total: 21.56 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 6.33 Total: 29.84 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -6.70 Total: -132.41 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.11 Total: -28.63 kcal Atomic # 9 Polarization: -19.28 SS G_CDS: 2.16 Total: -17.12 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -80.63 4.30 -76.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998254142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.954 kcal (2) G-P(sol) polarization free energy of solvation -80.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds