Wall clock time and date at job start Wed Apr 1 2020 04:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35319 * 128.04200 * 2 1 4 4 O 1.34011 * 106.66887 * 180.23657 * 3 2 1 5 5 N 1.20908 * 111.84991 * 359.75042 * 4 3 2 6 6 C 1.30984 * 111.43550 * 359.97438 * 5 4 3 7 7 C 1.48336 * 126.93589 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99658 * 174.06164 * 7 6 5 9 9 N 1.34772 * 120.00067 * 354.06811 * 7 6 5 10 10 C 1.46925 * 120.62954 * 353.23749 * 9 7 6 11 11 C 1.53192 * 108.77846 * 233.58874 * 10 9 7 12 12 C 1.53036 * 109.31351 * 305.36689 * 11 10 9 13 13 H 1.09004 * 109.44919 * 301.35099 * 12 11 10 14 14 C 1.52999 * 109.46523 * 181.38245 * 12 11 10 15 15 F 1.39910 * 109.46851 * 299.93450 * 14 12 11 16 16 F 1.39895 * 109.46796 * 59.92932 * 14 12 11 17 17 F 1.39898 * 109.47396 * 179.97438 * 14 12 11 18 18 C 1.53044 * 109.53801 * 61.35894 * 12 11 10 19 19 H 1.08998 * 109.50098 * 178.68245 * 18 12 11 20 20 N 1.46502 * 109.49644 * 58.62366 * 18 12 11 21 21 C 1.36938 * 120.00380 * 155.06472 * 20 18 12 22 22 H 1.07995 * 119.99744 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99803 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99562 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47008 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47235 * 120.00014 * 25 23 21 28 28 H 1.48502 * 109.46706 * 239.99891 * 25 23 21 29 29 C 1.46918 * 120.63278 * 173.21806 * 9 7 6 30 30 H 1.08995 * 109.47371 * 270.16387 * 1 2 3 31 31 H 1.08998 * 109.47099 * 30.16486 * 1 2 3 32 32 H 1.09002 * 109.47104 * 150.16209 * 1 2 3 33 33 H 1.07999 * 126.66349 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.58490 * 113.80227 * 10 9 7 35 35 H 1.09001 * 109.70806 * 353.44694 * 10 9 7 36 36 H 1.09001 * 109.50030 * 185.41319 * 11 10 9 37 37 H 1.09007 * 109.52321 * 65.33406 * 11 10 9 38 38 H 0.97003 * 119.99802 * 335.06104 * 20 18 12 39 39 H 0.97007 * 119.99976 * 180.02562 * 24 23 21 40 40 H 1.09004 * 109.58749 * 6.62556 * 29 9 7 41 41 H 1.08996 * 109.58926 * 246.19900 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0053 5 7 3.5989 -0.6317 -0.0035 6 6 2.3837 -1.1205 0.0036 7 6 1.9992 -2.5532 0.0073 8 8 0.8316 -2.8684 0.1229 9 7 2.9451 -3.5051 -0.1174 10 6 4.3393 -3.1418 -0.4054 11 6 4.8069 -3.9200 -1.6393 12 6 4.5819 -5.4162 -1.4093 13 1 5.1315 -5.7338 -0.5232 14 6 5.0796 -6.1995 -2.6257 15 9 4.3739 -5.7923 -3.7631 16 9 6.4444 -5.9548 -2.8113 17 9 4.8746 -7.5673 -2.4154 18 6 3.0888 -5.6840 -1.2064 19 1 2.9266 -6.7526 -1.0660 20 7 2.3458 -5.2273 -2.3835 21 6 1.1313 -5.7836 -2.6850 22 1 0.7211 -6.5586 -2.0547 23 6 0.4276 -5.3511 -3.8006 24 7 0.9274 -4.4062 -4.5684 25 14 -1.2294 -6.1095 -4.2114 26 1 -1.5656 -7.1425 -3.1990 27 1 -2.2725 -5.0526 -4.2060 28 1 -1.1671 -6.7366 -5.5560 29 6 2.6018 -4.9257 0.0324 30 1 -0.3634 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5113 33 1 2.0560 2.1075 0.0004 34 1 4.9673 -3.3980 0.4479 35 1 4.4074 -2.0716 -0.6009 36 1 5.8676 -3.7331 -1.8069 37 1 4.2383 -3.5964 -2.5112 38 1 2.7141 -4.5308 -2.9494 39 1 0.4354 -4.1038 -5.3479 40 1 1.5210 -5.0327 0.1248 41 1 3.0881 -5.3274 0.9213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998317878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:24 Heat of formation + Delta-G solvation = -113.738036 kcal Electronic energy + Delta-G solvation = -32989.333592 eV Core-core repulsion = 28072.031832 eV Total energy + Delta-G solvation = -4917.301761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.95620 -48.48622 -48.36453 -46.10132 -41.24646 -39.03084 -36.07327 -35.64996 -34.51620 -33.31055 -32.78155 -30.46520 -29.24638 -28.39271 -26.26763 -25.29684 -24.49538 -23.69920 -22.61929 -21.72655 -20.45196 -19.52025 -19.23505 -19.11410 -18.84337 -18.59547 -18.27269 -17.56558 -17.07639 -16.54736 -16.24426 -16.03960 -15.53208 -15.34491 -15.11171 -15.08776 -14.85622 -14.58528 -14.57027 -14.54354 -14.49784 -14.36291 -14.18889 -14.07203 -13.86963 -13.72124 -13.30923 -13.03911 -12.88006 -12.79297 -12.49892 -12.36046 -12.10524 -11.82688 -11.67008 -11.61808 -11.30260 -11.19066 -10.99200 -10.35482 -9.78929 -8.93365 -7.92874 -5.19333 0.11149 0.76275 1.41731 1.43146 1.51571 1.74651 1.87819 2.15272 2.29841 2.53674 2.81423 2.92747 3.06296 3.19830 3.40361 3.53388 3.71278 3.81213 3.90232 3.91989 4.01500 4.09153 4.21663 4.25901 4.41797 4.58433 4.63208 4.65875 4.75373 4.75911 4.81516 4.88426 4.93719 5.02695 5.15084 5.33250 5.49717 5.56448 6.25648 6.28242 6.93904 7.14819 7.36355 8.07230 8.29956 9.30264 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.005455 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.891704 B = 5131.898831 C = 7212.719352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.181 4.181 3 C -0.027 4.027 4 O 0.127 5.873 5 N -0.337 5.337 6 C -0.049 4.049 7 C 0.584 3.416 8 O -0.556 6.556 9 N -0.585 5.585 10 C 0.097 3.903 11 C -0.126 4.126 12 C -0.127 4.127 13 H 0.157 0.843 14 C 0.453 3.547 15 F -0.185 7.185 16 F -0.186 7.186 17 F -0.191 7.191 18 C 0.156 3.844 19 H 0.076 0.924 20 N -0.719 5.719 21 C -0.227 4.227 22 H 0.073 0.927 23 C -0.069 4.069 24 N -0.963 5.963 25 Si 0.961 3.039 26 H -0.267 1.267 27 H -0.300 1.300 28 H -0.294 1.294 29 C 0.102 3.898 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.279 0.721 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.246 0.754 40 H 0.066 0.934 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 9.885 13.039 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.186 4.186 3 C -0.108 4.108 4 O 0.053 5.947 5 N -0.039 5.039 6 C -0.206 4.206 7 C 0.371 3.629 8 O -0.433 6.433 9 N -0.317 5.317 10 C -0.025 4.025 11 C -0.165 4.165 12 C -0.147 4.147 13 H 0.175 0.825 14 C 0.399 3.601 15 F -0.166 7.166 16 F -0.168 7.168 17 F -0.173 7.173 18 C 0.046 3.954 19 H 0.093 0.907 20 N -0.360 5.360 21 C -0.359 4.359 22 H 0.091 0.909 23 C -0.262 4.262 24 N -0.614 5.614 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.228 1.228 28 H -0.222 1.222 29 C -0.023 4.023 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.294 0.706 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.065 0.935 38 H 0.212 0.788 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.906 8.918 13.071 19.218 hybrid contribution -1.859 -0.455 -1.321 2.325 sum 9.047 8.463 11.751 17.075 Atomic orbital electron populations 1.20147 0.86561 1.03289 1.03345 1.21657 0.99765 0.90595 1.06626 1.26583 0.80354 1.02349 1.01495 1.84723 1.30565 1.14752 1.64667 1.73923 1.20460 0.92292 1.17216 1.23487 0.90919 0.96662 1.09544 1.17361 0.85026 0.83602 0.76913 1.90748 1.18996 1.82058 1.51504 1.47816 1.09196 1.06312 1.68372 1.22417 0.80291 1.02356 0.97392 1.21918 1.03635 0.91787 0.99123 1.22790 0.99033 0.96899 0.96014 0.82535 1.20749 0.74689 0.78161 0.86473 1.93267 1.78562 1.90089 1.54711 1.93133 1.33410 1.94082 1.96155 1.93127 1.94754 1.34424 1.94955 1.20835 0.88342 0.98024 0.88215 0.90668 1.42569 1.20251 1.45466 1.27742 1.19503 0.95729 1.14517 1.06186 0.90940 1.25371 1.01925 1.00213 0.98676 1.69819 1.39921 1.33518 1.18104 0.85251 0.80623 0.77507 0.77504 1.19152 1.22799 1.22184 1.22385 1.01917 0.79258 0.98724 0.89792 0.87983 0.93845 0.70597 0.87548 0.86540 0.86790 0.93496 0.78794 0.94535 0.91566 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.97 71.24 0.71 -1.18 16 2 C -0.18 -4.64 6.34 -19.53 -0.12 -4.77 16 3 C -0.03 -0.43 12.24 67.15 0.82 0.39 16 4 O 0.13 2.55 11.18 71.93 0.80 3.35 16 5 N -0.34 -8.95 8.63 -49.51 -0.43 -9.38 16 6 C -0.05 -1.58 6.89 42.96 0.30 -1.29 16 7 C 0.58 22.99 7.71 86.93 0.67 23.66 16 8 O -0.56 -26.16 14.85 -3.70 -0.05 -26.21 16 9 N -0.59 -19.95 2.89 -821.78 -2.38 -22.33 16 10 C 0.10 2.57 6.13 86.36 0.53 3.09 16 11 C -0.13 -3.55 4.95 30.67 0.15 -3.40 16 12 C -0.13 -3.65 2.01 -10.77 -0.02 -3.67 16 13 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 14 C 0.45 15.22 2.69 71.98 0.19 15.42 16 15 F -0.18 -8.13 14.40 44.97 0.65 -7.48 16 16 F -0.19 -5.51 16.77 44.97 0.75 -4.75 16 17 F -0.19 -6.59 16.77 44.97 0.75 -5.84 16 18 C 0.16 5.72 2.45 45.07 0.11 5.83 16 19 H 0.08 2.75 7.70 -2.39 -0.02 2.73 16 20 N -0.72 -35.48 3.68 -322.57 -1.19 -36.67 16 21 C -0.23 -12.84 9.93 84.03 0.83 -12.01 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 24 N -0.96 -61.02 13.06 21.65 0.28 -60.74 16 25 Si 0.96 48.88 29.55 68.60 2.03 50.91 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 28 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 29 C 0.10 3.47 6.05 86.36 0.52 3.99 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.49 7.02 -2.39 -0.02 1.47 16 33 H 0.28 0.82 8.06 -2.91 -0.02 0.79 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.12 3.20 4.19 -13.45 -0.06 3.14 16 36 H 0.11 2.49 7.76 -2.39 -0.02 2.48 16 37 H 0.05 1.75 6.11 -2.38 -0.01 1.74 16 38 H 0.38 20.40 4.94 -92.71 -0.46 19.94 16 39 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 40 H 0.07 2.78 7.00 -2.38 -0.02 2.76 16 41 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -80.20 345.61 6.99 -73.21 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.61 Total: 23.53 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 5.16 Total: 22.39 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -3.71 Total: -129.11 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.75 Total: -22.86 kcal Atomic # 9 Polarization: -20.22 SS G_CDS: 2.16 Total: -18.07 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -80.20 6.99 -73.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998317878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.530 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds