Wall clock time and date at job start Wed Apr 1 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30012 * 127.33566 * 2 1 4 4 O 1.20657 * 112.30614 * 180.27861 * 3 2 1 5 5 C 1.33493 * 113.15359 * 359.73167 * 4 3 2 6 6 C 1.50697 * 126.83226 * 179.97438 * 5 4 3 7 7 F 1.39906 * 109.47353 * 270.00470 * 6 5 4 8 8 F 1.39898 * 109.47087 * 30.00051 * 6 5 4 9 9 F 1.39898 * 109.47610 * 150.00326 * 6 5 4 10 10 C 1.37364 * 106.34305 * 0.02562 * 5 4 3 11 11 C 1.47394 * 128.56556 * 179.97438 * 10 5 4 12 12 O 1.21612 * 120.00179 * 90.00152 * 11 10 5 13 13 N 1.34776 * 120.00238 * 269.99689 * 11 10 5 14 14 C 1.46924 * 120.62850 * 0.02562 * 13 11 10 15 15 C 1.53197 * 108.77778 * 126.36494 * 14 13 11 16 16 C 1.53044 * 109.31107 * 54.63560 * 15 14 13 17 17 C 1.53047 * 109.53474 * 298.63624 * 16 15 14 18 18 H 1.09001 * 109.49870 * 301.37720 * 17 16 15 19 19 N 1.46506 * 109.49418 * 181.31821 * 17 16 15 20 20 C 1.36938 * 119.99589 * 155.00033 * 19 17 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99817 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47163 * 59.99668 * 24 22 20 26 26 H 1.48505 * 109.47234 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47124 * 299.99692 * 24 22 20 28 28 C 1.46930 * 120.63067 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.46475 * 270.14193 * 1 2 3 30 30 H 1.08998 * 109.47340 * 30.14502 * 1 2 3 31 31 H 1.09002 * 109.47156 * 150.14619 * 1 2 3 32 32 H 1.08999 * 109.58876 * 6.58083 * 14 13 11 33 33 H 1.09002 * 109.58900 * 246.15081 * 14 13 11 34 34 H 1.09001 * 109.49809 * 294.68451 * 15 14 13 35 35 H 1.09003 * 109.52456 * 174.59903 * 15 14 13 36 36 H 1.08998 * 109.46229 * 178.61591 * 16 15 14 37 37 H 1.09005 * 109.45220 * 58.64480 * 16 15 14 38 38 H 0.96999 * 120.00080 * 334.99523 * 19 17 16 39 39 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.58281 * 113.85015 * 28 13 11 41 41 H 1.08990 * 109.58790 * 353.42174 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6007 -0.0043 6 6 4.9712 -1.3246 -0.0104 7 9 5.3730 -1.5507 -1.3313 8 9 5.9325 -0.5456 0.6425 9 9 4.8352 -2.5494 0.6517 10 6 2.3992 -1.1696 0.0024 11 6 2.0402 -2.5992 0.0057 12 8 1.8971 -3.1878 1.0602 13 7 1.8703 -3.2541 -1.1600 14 6 2.0401 -2.5567 -2.4420 15 6 3.0450 -3.3349 -3.2973 16 6 2.5803 -4.7872 -3.4285 17 6 2.5232 -5.4334 -2.0423 18 1 3.5086 -5.3875 -1.5786 19 7 2.1086 -6.8326 -2.1719 20 6 2.4597 -7.7425 -1.2107 21 1 3.0426 -7.4288 -0.3573 22 6 2.0673 -9.0683 -1.3336 23 7 1.3531 -9.4497 -2.3714 24 14 2.5469 -10.3098 -0.0229 25 1 1.9854 -9.8894 1.2861 26 1 2.0089 -11.6455 -0.3857 27 1 4.0269 -10.3812 0.0734 28 6 1.5129 -4.6792 -1.1728 29 1 -0.3632 0.0025 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8913 -0.5116 32 1 2.4157 -1.5493 -2.2630 33 1 1.0823 -2.5053 -2.9597 34 1 4.0253 -3.3082 -2.8215 35 1 3.1084 -2.8825 -4.2870 36 1 3.2806 -5.3372 -4.0570 37 1 1.5892 -4.8117 -3.8816 38 1 1.5853 -7.1144 -2.9385 39 1 1.0785 -10.3760 -2.4572 40 1 0.5120 -4.8011 -1.5868 41 1 1.5406 -5.0720 -0.1565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000323426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:15 Heat of formation + Delta-G solvation = -101.434156 kcal Electronic energy + Delta-G solvation = -32422.039718 eV Core-core repulsion = 27505.271494 eV Total energy + Delta-G solvation = -4916.768224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.61721 -48.13310 -48.10810 -45.56590 -40.11576 -37.49957 -35.24624 -34.54676 -33.42688 -32.36213 -31.27154 -29.35797 -28.52247 -27.24965 -25.87704 -24.23783 -23.79818 -22.00960 -21.63979 -20.75123 -19.57955 -19.20627 -18.78499 -18.62125 -18.14649 -17.53057 -17.13791 -16.42878 -15.88191 -15.15796 -14.93778 -14.88594 -14.64779 -14.49673 -14.33582 -14.20489 -14.16842 -14.15087 -13.93202 -13.82777 -13.67556 -13.49784 -13.42241 -12.91732 -12.69427 -12.52343 -12.41313 -11.89387 -11.47995 -11.16647 -10.86925 -10.76002 -10.67866 -10.59782 -10.52859 -10.27513 -10.08586 -9.90293 -9.71135 -9.15688 -8.56015 -7.06411 -5.82760 -3.13056 0.31501 1.29470 1.32063 2.15179 2.54584 2.82930 3.11278 3.43995 3.48047 3.48501 3.50206 3.77806 3.78349 3.92633 4.34194 4.40106 4.53896 4.75113 4.91355 4.95883 5.05739 5.13804 5.15453 5.39661 5.42454 5.49346 5.55997 5.72075 5.79214 5.91932 6.06645 6.10548 6.25035 6.35662 6.53348 6.72250 6.88635 7.30730 7.45606 7.67875 7.96011 8.35050 9.47260 9.99627 10.35047 11.39192 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003469 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.646133 B = 8070.214441 C = 8467.143584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.327 5.327 4 O 0.137 5.863 5 C -0.104 4.104 6 C 0.563 3.437 7 F -0.154 7.154 8 F -0.159 7.159 9 F -0.142 7.142 10 C -0.150 4.150 11 C 0.579 3.421 12 O -0.507 6.507 13 N -0.588 5.588 14 C 0.105 3.895 15 C -0.131 4.131 16 C -0.126 4.126 17 C 0.168 3.832 18 H 0.053 0.947 19 N -0.716 5.716 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.092 3.908 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 22.569 -0.578 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.027 5.027 4 O 0.067 5.933 5 C -0.169 4.169 6 C 0.506 3.494 7 F -0.135 7.135 8 F -0.140 7.140 9 F -0.123 7.123 10 C -0.158 4.158 11 C 0.362 3.638 12 O -0.382 6.382 13 N -0.321 5.321 14 C -0.018 4.018 15 C -0.169 4.169 16 C -0.164 4.164 17 C 0.056 3.944 18 H 0.071 0.929 19 N -0.356 5.356 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.032 4.032 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.029 23.368 0.116 23.457 hybrid contribution 0.191 -1.548 0.461 1.626 sum 2.221 21.820 0.576 21.941 Atomic orbital electron populations 1.20332 0.83874 1.04807 1.04699 1.24908 0.99164 0.85333 1.01102 1.73632 0.88745 1.22829 1.17482 1.84645 1.21772 1.19861 1.67031 1.24195 0.95239 0.86589 1.10903 1.16532 0.80481 0.77155 0.75183 1.93313 1.90955 1.94611 1.34663 1.93284 1.65203 1.74420 1.81139 1.93392 1.95486 1.43014 1.80431 1.22417 0.91353 0.97108 1.04909 1.16899 0.78868 0.83164 0.84870 1.90894 1.50089 1.66748 1.30467 1.48284 1.67128 1.12175 1.04561 1.21797 1.00344 0.95275 0.84343 1.21897 0.98888 0.96550 0.99598 1.21838 1.01765 0.94070 0.98763 1.20491 0.95805 0.85496 0.92572 0.92889 1.42364 1.64462 1.01711 1.27091 1.19228 1.28203 0.89045 1.01250 0.91020 1.24740 1.00363 0.97264 0.98041 1.69649 1.41572 1.16912 1.29783 0.86271 0.78111 0.80645 0.81214 1.21065 1.21650 1.21129 1.23003 1.00029 0.75763 1.04368 0.88898 0.89251 0.89141 0.91216 0.90576 0.91349 0.90612 0.91079 0.91853 0.77975 0.93355 0.91320 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.49 36.00 0.38 -0.23 16 2 C 0.06 0.60 7.59 -79.77 -0.61 -0.01 16 3 N -0.33 -3.63 12.01 34.78 0.42 -3.21 16 4 O 0.14 1.51 11.06 18.65 0.21 1.71 16 5 C -0.10 -1.21 6.75 -34.63 -0.23 -1.45 16 6 C 0.56 6.52 3.52 36.00 0.13 6.65 16 7 F -0.15 -1.69 17.30 2.25 0.04 -1.65 16 8 F -0.16 -1.71 17.30 2.25 0.04 -1.67 16 9 F -0.14 -2.00 16.09 2.25 0.04 -1.97 16 10 C -0.15 -1.90 4.17 -102.89 -0.43 -2.33 16 11 C 0.58 8.90 6.48 -12.53 -0.08 8.82 16 12 O -0.51 -9.76 16.52 5.27 0.09 -9.68 16 13 N -0.59 -8.49 2.97 -174.07 -0.52 -9.00 16 14 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 15 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 16 C -0.13 -1.85 5.35 -26.68 -0.14 -1.99 16 17 C 0.17 3.16 2.92 -67.82 -0.20 2.96 16 18 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 19 N -0.72 -17.10 5.12 -53.32 -0.27 -17.37 16 20 C -0.25 -6.69 9.93 -15.06 -0.15 -6.84 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 28 C 0.09 1.62 6.01 -3.73 -0.02 1.60 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.68 6.26 -51.93 -0.32 0.36 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 9.69 7.80 -40.82 -0.32 9.37 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -31.05 361.99 -5.22 -36.28 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.78 Total: 4.14 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -1.64 Total: 6.35 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.35 Total: -56.24 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.29 Total: -7.96 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.11 Total: -5.29 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.05 -5.22 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000323426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.155 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds