Wall clock time and date at job start Wed Apr 1 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30012 * 127.33566 * 2 1 4 4 O 1.20657 * 112.30614 * 180.27861 * 3 2 1 5 5 C 1.33493 * 113.15359 * 359.73167 * 4 3 2 6 6 C 1.50697 * 126.83226 * 179.97438 * 5 4 3 7 7 F 1.39906 * 109.47353 * 270.00470 * 6 5 4 8 8 F 1.39898 * 109.47087 * 30.00051 * 6 5 4 9 9 F 1.39898 * 109.47610 * 150.00326 * 6 5 4 10 10 C 1.37364 * 106.34305 * 0.02562 * 5 4 3 11 11 C 1.47394 * 128.56556 * 179.97438 * 10 5 4 12 12 O 1.21612 * 120.00179 * 90.00152 * 11 10 5 13 13 N 1.34776 * 120.00238 * 269.99689 * 11 10 5 14 14 C 1.46924 * 120.62850 * 0.02562 * 13 11 10 15 15 C 1.53197 * 108.77778 * 126.36494 * 14 13 11 16 16 C 1.53044 * 109.31107 * 54.63560 * 15 14 13 17 17 C 1.53047 * 109.53474 * 298.63624 * 16 15 14 18 18 H 1.09001 * 109.49870 * 301.37720 * 17 16 15 19 19 N 1.46506 * 109.49418 * 181.31821 * 17 16 15 20 20 C 1.36938 * 119.99589 * 155.00033 * 19 17 16 21 21 H 1.07999 * 120.00325 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99817 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47163 * 59.99668 * 24 22 20 26 26 H 1.48505 * 109.47234 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47124 * 299.99692 * 24 22 20 28 28 C 1.46930 * 120.63067 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.46475 * 270.14193 * 1 2 3 30 30 H 1.08998 * 109.47340 * 30.14502 * 1 2 3 31 31 H 1.09002 * 109.47156 * 150.14619 * 1 2 3 32 32 H 1.08999 * 109.58876 * 6.58083 * 14 13 11 33 33 H 1.09002 * 109.58900 * 246.15081 * 14 13 11 34 34 H 1.09001 * 109.49809 * 294.68451 * 15 14 13 35 35 H 1.09003 * 109.52456 * 174.59903 * 15 14 13 36 36 H 1.08998 * 109.46229 * 178.61591 * 16 15 14 37 37 H 1.09005 * 109.45220 * 58.64480 * 16 15 14 38 38 H 0.96999 * 120.00080 * 334.99523 * 19 17 16 39 39 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.58281 * 113.85015 * 28 13 11 41 41 H 1.08990 * 109.58790 * 353.42174 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6007 -0.0043 6 6 4.9712 -1.3246 -0.0104 7 9 5.3730 -1.5507 -1.3313 8 9 5.9325 -0.5456 0.6425 9 9 4.8352 -2.5494 0.6517 10 6 2.3992 -1.1696 0.0024 11 6 2.0402 -2.5992 0.0057 12 8 1.8971 -3.1878 1.0602 13 7 1.8703 -3.2541 -1.1600 14 6 2.0401 -2.5567 -2.4420 15 6 3.0450 -3.3349 -3.2973 16 6 2.5803 -4.7872 -3.4285 17 6 2.5232 -5.4334 -2.0423 18 1 3.5086 -5.3875 -1.5786 19 7 2.1086 -6.8326 -2.1719 20 6 2.4597 -7.7425 -1.2107 21 1 3.0426 -7.4288 -0.3573 22 6 2.0673 -9.0683 -1.3336 23 7 1.3531 -9.4497 -2.3714 24 14 2.5469 -10.3098 -0.0229 25 1 1.9854 -9.8894 1.2861 26 1 2.0089 -11.6455 -0.3857 27 1 4.0269 -10.3812 0.0734 28 6 1.5129 -4.6792 -1.1728 29 1 -0.3632 0.0025 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8913 -0.5116 32 1 2.4157 -1.5493 -2.2630 33 1 1.0823 -2.5053 -2.9597 34 1 4.0253 -3.3082 -2.8215 35 1 3.1084 -2.8825 -4.2870 36 1 3.2806 -5.3372 -4.0570 37 1 1.5892 -4.8117 -3.8816 38 1 1.5853 -7.1144 -2.9385 39 1 1.0785 -10.3760 -2.4572 40 1 0.5120 -4.8011 -1.5868 41 1 1.5406 -5.0720 -0.1565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000323426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:15 Heat of formation + Delta-G solvation = -120.806686 kcal Electronic energy + Delta-G solvation = -32422.879774 eV Core-core repulsion = 27505.271494 eV Total energy + Delta-G solvation = -4917.608280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.57424 -49.11943 -49.03758 -46.45367 -41.35859 -38.84304 -36.38615 -35.95817 -34.46870 -33.80793 -32.81968 -30.28079 -29.93107 -28.30198 -26.98844 -25.90931 -25.03071 -23.34579 -22.54021 -22.01640 -20.77786 -20.14445 -19.73213 -19.64703 -19.11831 -19.06267 -18.59574 -17.59728 -16.99793 -16.70871 -16.19418 -15.87954 -15.85099 -15.60143 -15.51966 -15.41751 -15.29244 -15.16087 -15.12552 -15.06941 -14.72869 -14.42429 -14.31519 -14.11324 -13.91822 -13.76553 -13.54749 -13.13311 -12.88937 -12.73127 -12.54028 -12.26614 -12.10351 -11.94968 -11.78339 -11.65128 -11.39123 -11.34871 -11.14089 -11.07705 -9.93233 -9.03758 -7.97690 -5.26709 -0.63713 0.36830 0.43761 0.98088 1.45998 1.47894 1.52205 1.54771 1.76103 2.17589 2.53712 2.61570 2.83337 2.84671 3.00353 3.34297 3.37263 3.46177 3.66739 3.96539 3.97625 4.10106 4.16571 4.27074 4.35064 4.51045 4.52249 4.60450 4.66189 4.81904 4.83414 4.97282 5.00044 5.10499 5.29807 5.39204 5.43381 5.52242 6.11285 6.24763 6.57462 6.74731 7.32396 8.03451 8.29115 9.24512 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.003469 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.646133 B = 8070.214441 C = 8467.143584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.069 3.931 3 N -0.331 5.331 4 O 0.141 5.859 5 C -0.093 4.093 6 C 0.565 3.435 7 F -0.148 7.148 8 F -0.153 7.153 9 F -0.160 7.160 10 C -0.167 4.167 11 C 0.582 3.418 12 O -0.555 6.555 13 N -0.584 5.584 14 C 0.101 3.899 15 C -0.123 4.123 16 C -0.117 4.117 17 C 0.166 3.834 18 H 0.031 0.969 19 N -0.727 5.727 20 C -0.247 4.247 21 H 0.065 0.935 22 C -0.063 4.063 23 N -0.962 5.962 24 Si 0.964 3.036 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.108 3.892 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.379 0.621 39 H 0.253 0.747 40 H 0.075 0.925 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 24.947 -1.474 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 N -0.032 5.032 4 O 0.073 5.927 5 C -0.158 4.158 6 C 0.509 3.491 7 F -0.129 7.129 8 F -0.134 7.134 9 F -0.142 7.142 10 C -0.175 4.175 11 C 0.367 3.633 12 O -0.433 6.433 13 N -0.316 5.316 14 C -0.020 4.020 15 C -0.161 4.161 16 C -0.155 4.155 17 C 0.056 3.944 18 H 0.050 0.950 19 N -0.367 5.367 20 C -0.378 4.378 21 H 0.083 0.917 22 C -0.256 4.256 23 N -0.612 5.612 24 Si 0.793 3.207 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.017 4.017 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.212 0.788 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.937 25.819 -0.801 25.904 hybrid contribution 0.271 -2.175 0.740 2.313 sum 2.208 23.644 -0.061 23.747 Atomic orbital electron populations 1.20538 0.81735 1.06157 1.05555 1.25298 1.00252 0.84065 0.99559 1.73647 0.88675 1.22761 1.18115 1.84669 1.21975 1.19155 1.66890 1.24104 0.94802 0.86893 1.10023 1.16501 0.80748 0.76576 0.75285 1.93324 1.90903 1.94559 1.34124 1.93298 1.64944 1.74082 1.81064 1.93363 1.95609 1.44292 1.80896 1.22113 0.92420 0.95928 1.06989 1.17147 0.77794 0.84116 0.84200 1.90869 1.52170 1.68120 1.32182 1.48241 1.66446 1.10896 1.06007 1.22126 1.01823 0.95604 0.82486 1.21888 0.98310 0.94245 1.01697 1.21736 1.02469 0.95870 0.95450 1.20650 0.94635 0.83674 0.95448 0.95046 1.42471 1.64530 1.03495 1.26180 1.19466 1.27099 0.89874 1.01391 0.91667 1.25416 1.01188 0.98925 1.00050 1.69770 1.43130 1.16875 1.31386 0.85366 0.77929 0.78464 0.78955 1.20942 1.21640 1.20530 1.22429 0.99798 0.77767 1.01669 0.88224 0.86888 0.88757 0.89220 0.87907 0.92161 0.86831 0.91797 0.90728 0.78798 0.93816 0.90717 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.49 71.24 0.75 -0.27 16 2 C 0.07 1.30 7.59 45.16 0.34 1.65 16 3 N -0.33 -6.48 12.01 -44.77 -0.54 -7.01 16 4 O 0.14 2.79 11.06 76.98 0.85 3.64 16 5 C -0.09 -2.00 6.75 25.48 0.17 -1.83 16 6 C 0.56 12.47 3.52 71.24 0.25 12.72 16 7 F -0.15 -2.99 17.30 44.97 0.78 -2.21 16 8 F -0.15 -3.09 17.30 44.97 0.78 -2.31 16 9 F -0.16 -4.54 16.09 44.97 0.72 -3.82 16 10 C -0.17 -3.95 4.17 -18.74 -0.08 -4.03 16 11 C 0.58 17.67 6.48 86.65 0.56 18.23 16 12 O -0.55 -21.96 16.52 -4.07 -0.07 -22.03 16 13 N -0.58 -16.26 2.97 -822.89 -2.45 -18.71 16 14 C 0.10 1.90 6.34 86.36 0.55 2.44 16 15 C -0.12 -2.43 6.08 30.67 0.19 -2.25 16 16 C -0.12 -3.26 5.35 30.62 0.16 -3.09 16 17 C 0.17 6.30 2.92 45.06 0.13 6.44 16 18 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 19 N -0.73 -35.47 5.12 -322.61 -1.65 -37.12 16 20 C -0.25 -13.71 9.93 84.03 0.83 -12.88 16 21 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 22 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 23 N -0.96 -57.49 13.06 21.65 0.28 -57.21 16 24 Si 0.96 46.53 29.55 68.60 2.03 48.56 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.11 3.85 6.01 86.35 0.52 4.37 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.41 6.26 -2.39 -0.01 1.39 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.38 19.38 7.80 -92.71 -0.72 18.65 16 39 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 2.46 7.00 -2.39 -0.02 2.44 16 Total: -1.00 -69.12 361.99 5.96 -63.16 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.38 Total: 16.66 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 4.85 Total: 18.40 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -4.35 Total: -120.06 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.78 Total: -18.38 kcal Atomic # 9 Polarization: -10.62 SS G_CDS: 2.28 Total: -8.34 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.12 5.96 -63.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000323426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.645 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds