Wall clock time and date at job start Wed Apr 1 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30018 * 127.33731 * 2 1 4 4 O 1.20659 * 112.30168 * 180.27079 * 3 2 1 5 5 C 1.33491 * 113.15600 * 359.73358 * 4 3 2 6 6 C 1.50705 * 126.82775 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47137 * 270.00228 * 6 5 4 8 8 F 1.39903 * 109.47015 * 30.00477 * 6 5 4 9 9 F 1.39902 * 109.46871 * 149.99915 * 6 5 4 10 10 C 1.37361 * 106.34385 * 359.97438 * 5 4 3 11 11 C 1.47396 * 128.56375 * 179.97438 * 10 5 4 12 12 O 1.21605 * 119.99679 * 90.00416 * 11 10 5 13 13 N 1.34783 * 120.00006 * 270.00044 * 11 10 5 14 14 C 1.46494 * 119.99847 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.50142 * 35.06316 * 14 13 11 16 16 C 1.53035 * 109.52558 * 155.11155 * 14 13 11 17 17 C 1.53036 * 109.54208 * 181.29577 * 16 14 13 18 18 C 1.53187 * 109.34322 * 298.68633 * 17 16 14 19 19 N 1.46931 * 108.77328 * 54.61625 * 18 17 16 20 20 C 1.36936 * 120.63067 * 126.41445 * 19 18 17 21 21 H 1.08000 * 120.00367 * 207.67968 * 20 19 18 22 22 C 1.38813 * 120.00195 * 27.67060 * 20 19 18 23 23 N 1.31618 * 119.99784 * 17.36157 * 22 20 19 24 24 Si 1.86798 * 120.00239 * 197.35690 * 22 20 19 25 25 H 1.48497 * 109.46812 * 90.00677 * 24 22 20 26 26 H 1.48507 * 109.46940 * 210.00325 * 24 22 20 27 27 H 1.48497 * 109.47456 * 330.00241 * 24 22 20 28 28 C 1.46924 * 118.73945 * 306.39552 * 19 18 17 29 29 H 1.08998 * 109.47388 * 270.15087 * 1 2 3 30 30 H 1.09002 * 109.47015 * 30.15113 * 1 2 3 31 31 H 1.09001 * 109.47270 * 150.14841 * 1 2 3 32 32 H 0.97001 * 120.00138 * 0.02562 * 13 11 10 33 33 H 1.09004 * 109.43059 * 61.29520 * 16 14 13 34 34 H 1.09004 * 109.49059 * 301.34046 * 16 14 13 35 35 H 1.09003 * 109.50075 * 178.72001 * 17 16 14 36 36 H 1.09000 * 109.49507 * 58.65586 * 17 16 14 37 37 H 1.09001 * 109.58655 * 174.40285 * 18 17 16 38 38 H 1.09000 * 109.58941 * 294.69086 * 18 17 16 39 39 H 0.97006 * 120.00403 * 179.97438 * 23 22 20 40 40 H 1.08995 * 109.58607 * 173.39814 * 28 19 18 41 41 H 1.09001 * 109.58385 * 293.67565 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3247 -0.0100 7 9 5.3731 -1.5508 -1.3308 8 9 5.9324 -0.5457 0.6431 9 9 4.8350 -2.5494 0.6524 10 6 2.3991 -1.1696 0.0037 11 6 2.0401 -2.5992 0.0075 12 8 1.8978 -3.1875 1.0622 13 7 1.8694 -3.2543 -1.1580 14 6 1.5120 -4.6750 -1.1541 15 1 0.8553 -4.8827 -0.3092 16 6 0.7915 -5.0247 -2.4582 17 6 0.3894 -6.5012 -2.4408 18 6 1.6476 -7.3685 -2.3352 19 7 2.4204 -6.9397 -1.1615 20 6 2.7960 -7.8446 -0.2048 21 1 2.9464 -7.5216 0.8147 22 6 2.9833 -9.1772 -0.5453 23 7 3.1394 -9.5184 -1.8069 24 14 3.0139 -10.4863 0.7869 25 1 1.6373 -10.9953 1.0124 26 1 3.8920 -11.6057 0.3608 27 1 3.5370 -9.8988 2.0464 28 6 2.7830 -5.5216 -1.0339 29 1 -0.3634 0.0027 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3634 -0.8913 -0.5115 32 1 1.9832 -2.7851 -1.9993 33 1 1.4573 -4.8396 -3.3012 34 1 -0.1007 -4.4064 -2.5579 35 1 -0.1437 -6.7440 -3.3601 36 1 -0.2570 -6.6921 -1.5842 37 1 1.3621 -8.4144 -2.2226 38 1 2.2503 -7.2492 -3.2356 39 1 3.2706 -10.4496 -2.0449 40 1 3.2466 -5.3490 -0.0627 41 1 3.4814 -5.2504 -1.8255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008693308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:22 Heat of formation + Delta-G solvation = -96.698929 kcal Electronic energy + Delta-G solvation = -31914.952615 eV Core-core repulsion = 26998.389725 eV Total energy + Delta-G solvation = -4916.562890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.58193 -48.10177 -48.07168 -45.56037 -39.86628 -37.48087 -35.17809 -34.48591 -33.45466 -32.44028 -30.51630 -29.42400 -28.92376 -27.06554 -25.33109 -24.95206 -22.32974 -22.11155 -21.58031 -20.65954 -19.66215 -19.17591 -18.92205 -18.74698 -18.10901 -17.67965 -16.84962 -16.22308 -15.86613 -14.93539 -14.90366 -14.81292 -14.74745 -14.45176 -14.23427 -14.17003 -14.16725 -14.00868 -13.85346 -13.83336 -13.59791 -13.38585 -13.14783 -12.68206 -12.48763 -12.46713 -11.93463 -11.92939 -11.18544 -10.96245 -10.84975 -10.64692 -10.53842 -10.31693 -10.27268 -10.21045 -9.94745 -9.74590 -9.71702 -9.03200 -8.44597 -6.71502 -5.80287 -3.22790 0.31069 1.28710 1.32399 2.15513 2.56478 2.90548 3.13217 3.39716 3.46447 3.48670 3.53273 3.80736 3.85051 3.95771 4.40014 4.47764 4.56837 4.92182 5.03921 5.13187 5.18609 5.32266 5.46419 5.53572 5.55162 5.61223 5.97176 6.01379 6.14905 6.38096 6.50930 6.55682 6.60145 6.75530 6.88004 7.30483 7.40100 7.44990 7.61477 7.81938 8.01807 8.43349 9.19942 9.81756 10.36864 11.28489 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003383 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.600970 B = 8274.358855 C = 9221.470906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.328 5.328 4 O 0.137 5.863 5 C -0.097 4.097 6 C 0.562 3.438 7 F -0.154 7.154 8 F -0.159 7.159 9 F -0.140 7.140 10 C -0.160 4.160 11 C 0.582 3.418 12 O -0.499 6.499 13 N -0.705 5.705 14 C 0.125 3.875 15 H 0.091 0.909 16 C -0.115 4.115 17 C -0.139 4.139 18 C 0.166 3.834 19 N -0.586 5.586 20 C -0.252 4.252 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.903 5.903 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.141 3.859 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 20.372 -1.512 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.028 5.028 4 O 0.067 5.933 5 C -0.162 4.162 6 C 0.506 3.494 7 F -0.136 7.136 8 F -0.140 7.140 9 F -0.121 7.121 10 C -0.167 4.167 11 C 0.363 3.637 12 O -0.373 6.373 13 N -0.355 5.355 14 C 0.020 3.980 15 H 0.109 0.891 16 C -0.153 4.153 17 C -0.179 4.179 18 C 0.041 3.959 19 N -0.309 5.309 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.013 3.987 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.545 21.022 -0.793 21.333 hybrid contribution 0.313 -1.201 0.192 1.256 sum -3.232 19.821 -0.600 20.092 Atomic orbital electron populations 1.20333 0.83883 1.04803 1.04705 1.24907 0.99140 0.85368 1.00949 1.73640 0.88747 1.22862 1.17571 1.84650 1.21791 1.19909 1.66927 1.24248 0.95295 0.86573 1.10087 1.16548 0.80443 0.77209 0.75224 1.93320 1.90951 1.94617 1.34665 1.93286 1.65201 1.74421 1.81126 1.93408 1.95460 1.42891 1.80386 1.22450 0.91333 0.97038 1.05908 1.16785 0.78681 0.83012 0.85224 1.90923 1.48907 1.66811 1.30666 1.46130 1.69690 1.12428 1.07252 1.21937 0.99692 0.76930 0.99439 0.89087 1.21686 0.99016 0.98331 0.96239 1.22182 1.01041 0.94017 1.00653 1.20856 0.88077 0.98426 0.88582 1.43995 1.60924 1.01653 1.24320 1.19239 1.41209 0.88685 0.89041 0.91442 1.25015 0.99938 0.98407 0.96101 1.70038 1.52242 1.16772 1.15716 0.86270 0.77544 0.81453 0.81445 1.21385 1.21763 1.20320 1.21182 0.92194 0.85696 0.99636 0.88888 0.89284 0.89112 0.76784 0.92048 0.92929 0.92561 0.92326 0.89162 0.96218 0.93626 0.92196 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.49 36.00 0.38 -0.19 16 2 C 0.06 0.60 7.59 -79.77 -0.61 -0.01 16 3 N -0.33 -3.63 12.01 34.78 0.42 -3.21 16 4 O 0.14 1.51 11.06 18.66 0.21 1.72 16 5 C -0.10 -1.12 6.85 -34.63 -0.24 -1.36 16 6 C 0.56 6.62 3.52 36.01 0.13 6.75 16 7 F -0.15 -1.76 17.30 2.25 0.04 -1.72 16 8 F -0.16 -1.76 17.30 2.25 0.04 -1.72 16 9 F -0.14 -2.02 16.09 2.25 0.04 -1.99 16 10 C -0.16 -1.95 6.19 -102.89 -0.64 -2.59 16 11 C 0.58 8.51 6.56 -12.53 -0.08 8.43 16 12 O -0.50 -9.37 16.77 5.27 0.09 -9.28 16 13 N -0.70 -9.41 5.08 -54.78 -0.28 -9.69 16 14 C 0.12 2.08 2.60 -67.82 -0.18 1.90 16 15 H 0.09 1.72 7.58 -51.92 -0.39 1.32 16 16 C -0.11 -1.69 5.36 -26.69 -0.14 -1.84 16 17 C -0.14 -2.44 6.08 -26.62 -0.16 -2.60 16 18 C 0.17 3.79 5.31 -3.71 -0.02 3.77 16 19 N -0.59 -14.50 3.00 -172.32 -0.52 -15.01 16 20 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16 21 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 22 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 23 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 24 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 C 0.14 2.96 6.09 -3.71 -0.02 2.93 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.40 4.13 8.59 -40.82 -0.35 3.78 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -31.23 361.45 -5.56 -36.79 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.82 Total: -0.98 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.81 Total: 8.11 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.24 Total: -53.17 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.29 Total: -7.57 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.11 Total: -5.43 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.23 -5.56 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008693308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.907 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds