Wall clock time and date at job start Wed Apr 1 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46820 * 270.00095 * 3 2 1 5 5 H 1.48504 * 109.47075 * 29.99969 * 3 2 1 6 6 H 1.48502 * 109.46821 * 150.00028 * 3 2 1 7 7 C 1.38803 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 197.35790 * 7 2 1 9 9 N 1.36942 * 120.00311 * 17.36222 * 7 2 1 10 10 C 1.46921 * 120.62704 * 27.68011 * 9 7 2 11 11 C 1.53188 * 108.77601 * 126.39721 * 10 9 7 12 12 C 1.53034 * 109.31747 * 54.62836 * 11 10 9 13 13 C 1.53038 * 109.53664 * 298.63870 * 12 11 10 14 14 H 1.08999 * 109.50081 * 301.37584 * 13 12 11 15 15 C 1.53005 * 109.49865 * 181.31603 * 13 12 11 16 16 N 1.46498 * 109.47215 * 175.06742 * 15 13 12 17 17 C 1.34777 * 120.00012 * 179.97438 * 16 15 13 18 18 O 1.21612 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.47413 * 120.00283 * 179.97438 * 17 16 15 20 20 N 1.36066 * 126.44888 * 0.04786 * 19 17 16 21 21 C 1.29932 * 108.48202 * 179.97438 * 20 19 17 22 22 O 1.34052 * 109.24229 * 0.02562 * 21 20 19 23 23 C 1.34259 * 108.22528 * 359.97438 * 22 21 20 24 24 C 1.50695 * 126.52523 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.47305 * 270.02209 * 24 23 22 26 26 F 1.39904 * 109.46983 * 30.02266 * 24 23 22 27 27 F 1.39904 * 109.47098 * 150.02261 * 24 23 22 28 28 C 1.46934 * 120.60505 * 207.65785 * 9 7 2 29 29 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.59281 * 6.59761 * 10 9 7 31 31 H 1.09012 * 109.70171 * 246.24973 * 10 9 7 32 32 H 1.09004 * 109.49340 * 294.67408 * 11 10 9 33 33 H 1.08999 * 109.50126 * 174.58673 * 11 10 9 34 34 H 1.09002 * 109.46553 * 178.61952 * 12 11 10 35 35 H 1.08996 * 109.44855 * 58.64954 * 12 11 10 36 36 H 1.08996 * 109.47010 * 55.06345 * 15 13 12 37 37 H 1.09000 * 109.47054 * 295.06332 * 15 13 12 38 38 H 0.97000 * 119.99887 * 359.97438 * 16 15 13 39 39 H 1.07998 * 125.38347 * 180.25956 * 21 20 19 40 40 H 1.08996 * 109.55960 * 113.80059 * 28 9 7 41 41 H 1.09002 * 109.61050 * 353.38047 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2796 9 7 1.3724 -2.3612 -0.3528 10 6 0.2280 -2.3350 -1.2739 11 6 0.5011 -3.3053 -2.4274 12 6 0.8192 -4.6902 -1.8594 13 6 2.0748 -4.6100 -0.9881 14 1 2.9088 -4.2406 -1.5848 15 6 2.4108 -6.0013 -0.4472 16 7 3.6763 -5.9465 0.2889 17 6 4.1735 -7.0624 0.8582 18 8 3.5719 -8.1147 0.7605 19 6 5.4472 -7.0075 1.5984 20 7 6.2249 -5.9073 1.7885 21 6 7.2634 -6.2530 2.4886 22 8 7.1923 -7.5623 2.7676 23 6 6.0664 -8.0476 2.2204 24 6 5.5807 -9.4727 2.2831 25 9 6.0882 -10.1869 1.1924 26 9 6.0206 -10.0633 3.4727 27 9 4.1824 -9.4911 2.2426 28 6 1.8203 -3.6544 0.1819 29 1 -0.4850 0.8400 0.0004 30 1 0.0985 -1.3267 -1.6672 31 1 -0.6756 -2.6400 -0.7460 32 1 1.3498 -2.9475 -3.0105 33 1 -0.3795 -3.3677 -3.0666 34 1 0.9899 -5.3885 -2.6788 35 1 -0.0199 -5.0365 -1.2560 36 1 2.5034 -6.7013 -1.2775 37 1 1.6160 -6.3331 0.2209 38 1 4.1563 -5.1072 0.3665 39 1 8.0567 -5.5896 2.8000 40 1 1.0482 -4.0682 0.8305 41 1 2.7412 -3.5169 0.7485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023449509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:31 Heat of formation + Delta-G solvation = -135.429752 kcal Electronic energy + Delta-G solvation = -30982.531933 eV Core-core repulsion = 26064.289548 eV Total energy + Delta-G solvation = -4918.242384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.49124 -48.06614 -47.89802 -44.14346 -39.76645 -37.84289 -35.55664 -34.95114 -33.02680 -32.04603 -30.51600 -30.41060 -27.19775 -25.67762 -25.28568 -24.09133 -22.76156 -22.11170 -21.11789 -20.77627 -19.55232 -19.04157 -18.98677 -18.61604 -18.01751 -17.29737 -16.71865 -16.40275 -15.90773 -15.41765 -14.97538 -14.88603 -14.79308 -14.53225 -14.42457 -14.27311 -14.22317 -14.04278 -13.79309 -13.66028 -13.45145 -13.05265 -12.82080 -12.41076 -12.35045 -12.19960 -11.94048 -11.48571 -11.32079 -11.03184 -10.75280 -10.52451 -10.38753 -10.23427 -10.17861 -10.01728 -9.93358 -9.61404 -9.44966 -9.06638 -8.48169 -6.70009 -5.80706 -3.23427 0.14319 1.23678 1.49187 2.51732 2.80471 2.92197 3.24498 3.35989 3.42884 3.44000 3.45870 3.84210 3.90922 4.24243 4.46419 4.61527 4.82508 5.04058 5.25934 5.36652 5.40276 5.43351 5.59235 5.78795 5.87307 5.95877 6.19424 6.25136 6.33891 6.37605 6.57487 6.65764 6.69250 6.75098 6.83408 6.93397 7.37466 7.38855 7.65967 7.77472 7.96009 8.42622 9.19080 9.82438 10.38921 11.27614 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002645 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.206834 B =10583.709253 C =11856.323843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.075 0.925 15 C 0.125 3.875 16 N -0.695 5.695 17 C 0.583 3.417 18 O -0.516 6.516 19 C 0.024 3.976 20 N -0.461 5.461 21 C 0.223 3.777 22 O -0.172 6.172 23 C -0.090 4.090 24 C 0.565 3.435 25 F -0.160 7.160 26 F -0.169 7.169 27 F -0.123 7.123 28 C 0.153 3.847 29 H 0.254 0.746 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.271 0.729 40 H 0.019 0.981 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 -16.587 3.090 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.002 3.998 16 N -0.346 5.346 17 C 0.366 3.634 18 O -0.392 6.392 19 C -0.098 4.098 20 N -0.189 5.189 21 C -0.004 4.004 22 O -0.058 6.058 23 C -0.148 4.148 24 C 0.509 3.491 25 F -0.142 7.142 26 F -0.150 7.150 27 F -0.104 7.104 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.286 0.714 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.860 -16.597 2.818 21.184 hybrid contribution 0.960 0.690 0.392 1.245 sum 13.820 -15.907 3.210 21.315 Atomic orbital electron populations 1.70041 1.05265 1.25508 1.53784 1.25034 0.95273 0.98406 1.00893 0.86294 0.79108 0.83695 0.77687 1.21451 1.21792 1.20428 1.19190 0.92703 0.84852 1.41589 0.91646 1.44039 1.35829 1.01167 1.50289 1.20803 0.88516 0.98456 0.87957 1.22169 1.00134 0.95892 0.99886 1.21336 0.96607 0.97835 0.97947 1.21974 0.99026 0.93315 0.99590 0.90696 1.21623 0.84023 0.98562 0.95567 1.45887 1.24659 1.11232 1.52807 1.16714 0.82290 0.84971 0.79474 1.90940 1.59236 1.29127 1.59931 1.21934 0.98264 0.88376 1.01252 1.71016 1.03864 1.27830 1.16188 1.28576 0.98475 0.79512 0.93876 1.84386 1.35968 1.26342 1.59087 1.23152 0.90352 0.96055 1.05212 1.16470 0.77096 0.81001 0.74501 1.93282 1.87179 1.79093 1.54597 1.93260 1.89517 1.85308 1.46921 1.93466 1.25140 1.95992 1.95766 1.20910 0.97552 0.86881 0.92054 0.93624 0.89515 0.96434 0.92733 0.93131 0.93351 0.92382 0.91338 0.90926 0.74999 0.71371 0.96296 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.35 3.00 -172.32 -0.52 -14.87 16 10 C 0.17 3.93 5.31 -3.72 -0.02 3.91 16 11 C -0.14 -2.61 6.08 -26.62 -0.16 -2.77 16 12 C -0.10 -1.58 5.17 -26.69 -0.14 -1.72 16 13 C -0.12 -1.90 2.37 -90.50 -0.21 -2.11 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.76 5.07 -4.04 -0.02 1.74 16 16 N -0.70 -9.55 5.33 -61.39 -0.33 -9.87 16 17 C 0.58 8.33 7.76 -12.52 -0.10 8.23 16 18 O -0.52 -8.38 13.14 5.27 0.07 -8.31 16 19 C 0.02 0.30 6.96 -83.02 -0.58 -0.27 16 20 N -0.46 -4.91 11.06 -11.49 -0.13 -5.03 16 21 C 0.22 1.50 13.19 51.96 0.69 2.19 16 22 O -0.17 -1.50 10.72 6.50 0.07 -1.43 16 23 C -0.09 -1.01 6.75 -35.08 -0.24 -1.25 16 24 C 0.56 6.48 3.34 36.00 0.12 6.60 16 25 F -0.16 -1.85 17.30 2.25 0.04 -1.81 16 26 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 27 F -0.12 -1.66 13.48 2.25 0.03 -1.63 16 28 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 31 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.41 5.52 7.43 -40.82 -0.30 5.22 16 39 H 0.27 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.99 7.14 -51.93 -0.37 0.62 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -31.89 353.66 -5.48 -37.37 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.76 Total: 0.31 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.91 Total: 10.62 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.35 Total: -55.00 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.14 Total: -9.74 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.11 Total: -5.17 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.89 -5.48 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023449509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.061 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds