Wall clock time and date at job start Wed Apr 1 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46820 * 270.00095 * 3 2 1 5 5 H 1.48504 * 109.47075 * 29.99969 * 3 2 1 6 6 H 1.48502 * 109.46821 * 150.00028 * 3 2 1 7 7 C 1.38803 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 197.35790 * 7 2 1 9 9 N 1.36942 * 120.00311 * 17.36222 * 7 2 1 10 10 C 1.46921 * 120.62704 * 27.68011 * 9 7 2 11 11 C 1.53188 * 108.77601 * 126.39721 * 10 9 7 12 12 C 1.53034 * 109.31747 * 54.62836 * 11 10 9 13 13 C 1.53038 * 109.53664 * 298.63870 * 12 11 10 14 14 H 1.08999 * 109.50081 * 301.37584 * 13 12 11 15 15 C 1.53005 * 109.49865 * 181.31603 * 13 12 11 16 16 N 1.46498 * 109.47215 * 175.06742 * 15 13 12 17 17 C 1.34777 * 120.00012 * 179.97438 * 16 15 13 18 18 O 1.21612 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.47413 * 120.00283 * 179.97438 * 17 16 15 20 20 N 1.36066 * 126.44888 * 0.04786 * 19 17 16 21 21 C 1.29932 * 108.48202 * 179.97438 * 20 19 17 22 22 O 1.34052 * 109.24229 * 0.02562 * 21 20 19 23 23 C 1.34259 * 108.22528 * 359.97438 * 22 21 20 24 24 C 1.50695 * 126.52523 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.47305 * 270.02209 * 24 23 22 26 26 F 1.39904 * 109.46983 * 30.02266 * 24 23 22 27 27 F 1.39904 * 109.47098 * 150.02261 * 24 23 22 28 28 C 1.46934 * 120.60505 * 207.65785 * 9 7 2 29 29 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.59281 * 6.59761 * 10 9 7 31 31 H 1.09012 * 109.70171 * 246.24973 * 10 9 7 32 32 H 1.09004 * 109.49340 * 294.67408 * 11 10 9 33 33 H 1.08999 * 109.50126 * 174.58673 * 11 10 9 34 34 H 1.09002 * 109.46553 * 178.61952 * 12 11 10 35 35 H 1.08996 * 109.44855 * 58.64954 * 12 11 10 36 36 H 1.08996 * 109.47010 * 55.06345 * 15 13 12 37 37 H 1.09000 * 109.47054 * 295.06332 * 15 13 12 38 38 H 0.97000 * 119.99887 * 359.97438 * 16 15 13 39 39 H 1.07998 * 125.38347 * 180.25956 * 21 20 19 40 40 H 1.08996 * 109.55960 * 113.80059 * 28 9 7 41 41 H 1.09002 * 109.61050 * 353.38047 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2796 9 7 1.3724 -2.3612 -0.3528 10 6 0.2280 -2.3350 -1.2739 11 6 0.5011 -3.3053 -2.4274 12 6 0.8192 -4.6902 -1.8594 13 6 2.0748 -4.6100 -0.9881 14 1 2.9088 -4.2406 -1.5848 15 6 2.4108 -6.0013 -0.4472 16 7 3.6763 -5.9465 0.2889 17 6 4.1735 -7.0624 0.8582 18 8 3.5719 -8.1147 0.7605 19 6 5.4472 -7.0075 1.5984 20 7 6.2249 -5.9073 1.7885 21 6 7.2634 -6.2530 2.4886 22 8 7.1923 -7.5623 2.7676 23 6 6.0664 -8.0476 2.2204 24 6 5.5807 -9.4727 2.2831 25 9 6.0882 -10.1869 1.1924 26 9 6.0206 -10.0633 3.4727 27 9 4.1824 -9.4911 2.2426 28 6 1.8203 -3.6544 0.1819 29 1 -0.4850 0.8400 0.0004 30 1 0.0985 -1.3267 -1.6672 31 1 -0.6756 -2.6400 -0.7460 32 1 1.3498 -2.9475 -3.0105 33 1 -0.3795 -3.3677 -3.0666 34 1 0.9899 -5.3885 -2.6788 35 1 -0.0199 -5.0365 -1.2560 36 1 2.5034 -6.7013 -1.2775 37 1 1.6160 -6.3331 0.2209 38 1 4.1563 -5.1072 0.3665 39 1 8.0567 -5.5896 2.8000 40 1 1.0482 -4.0682 0.8305 41 1 2.7412 -3.5169 0.7485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023449509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:31 Heat of formation + Delta-G solvation = -158.589659 kcal Electronic energy + Delta-G solvation = -30983.536221 eV Core-core repulsion = 26064.289548 eV Total energy + Delta-G solvation = -4919.246673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.38585 -48.93487 -48.83630 -44.86503 -40.89305 -39.35627 -36.41719 -36.26321 -34.68103 -32.86313 -32.29427 -31.94964 -28.21423 -27.24179 -26.73463 -25.01408 -23.85135 -23.54736 -22.48719 -21.85140 -20.81163 -20.18904 -19.86438 -19.51976 -18.97455 -18.57460 -18.04693 -17.29572 -16.95356 -16.75008 -16.55091 -15.81203 -15.79288 -15.75418 -15.49448 -15.33913 -15.28557 -15.15557 -15.01939 -14.96194 -14.76165 -14.50941 -14.04636 -13.89488 -13.74601 -13.64577 -13.02102 -12.86799 -12.77367 -12.51555 -12.26181 -12.21808 -11.94981 -11.81866 -11.61058 -11.51702 -11.19985 -11.08034 -10.81986 -10.52336 -10.18688 -8.67419 -7.85776 -5.31357 -0.68464 0.46295 0.79396 1.48019 1.49560 1.58108 1.68298 1.84163 1.91552 2.44225 2.52173 2.77272 2.98587 3.02110 3.28703 3.35678 3.59044 3.80963 3.98147 4.00774 4.06410 4.12211 4.41963 4.56471 4.59914 4.75289 4.82145 4.87310 4.90404 5.00474 5.12120 5.16980 5.30719 5.35828 5.43855 5.58282 5.68005 5.80034 5.95376 6.32154 6.40386 6.88297 7.16163 7.87534 8.39064 9.20406 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002645 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.206834 B =10583.709253 C =11856.323843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.101 4.101 14 H 0.076 0.924 15 C 0.135 3.865 16 N -0.694 5.694 17 C 0.580 3.420 18 O -0.541 6.541 19 C 0.009 3.991 20 N -0.494 5.494 21 C 0.256 3.744 22 O -0.167 6.167 23 C -0.095 4.095 24 C 0.566 3.434 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.138 7.138 28 C 0.152 3.848 29 H 0.249 0.751 30 H 0.051 0.949 31 H -0.007 1.007 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.327 0.673 40 H 0.007 0.993 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.942 -17.164 2.922 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.121 4.121 14 H 0.095 0.905 15 C 0.012 3.988 16 N -0.344 5.344 17 C 0.364 3.636 18 O -0.418 6.418 19 C -0.113 4.113 20 N -0.222 5.222 21 C 0.029 3.971 22 O -0.054 6.054 23 C -0.154 4.154 24 C 0.510 3.490 25 F -0.143 7.143 26 F -0.145 7.145 27 F -0.119 7.119 28 C 0.026 3.974 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.011 0.989 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.341 0.659 40 H 0.025 0.975 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.267 -17.190 2.645 23.143 hybrid contribution 0.278 0.865 0.521 1.047 sum 15.545 -16.326 3.166 22.764 Atomic orbital electron populations 1.70202 1.06750 1.25766 1.55532 1.25796 0.95999 1.01541 1.01398 0.85279 0.78189 0.79540 0.77532 1.21250 1.22470 1.19037 1.19550 0.93059 0.85998 1.40527 0.91262 1.44309 1.35846 1.02083 1.50988 1.20644 0.87625 0.97895 0.89205 1.21997 1.00975 0.95962 0.97981 1.21333 0.96353 0.96799 0.98925 1.21729 0.99282 0.93283 0.97848 0.90519 1.21467 0.84151 0.97259 0.95927 1.45849 1.24472 1.11340 1.52754 1.16964 0.82858 0.84526 0.79238 1.90922 1.60205 1.29866 1.60856 1.21678 0.98062 0.89559 1.01955 1.71012 1.05238 1.27593 1.18368 1.29884 0.97788 0.78847 0.90552 1.84428 1.34855 1.27274 1.58803 1.22953 0.91165 0.95565 1.05689 1.16469 0.76456 0.81459 0.74578 1.93273 1.87090 1.79235 1.54745 1.93265 1.89351 1.85295 1.46568 1.93431 1.26461 1.96121 1.95853 1.21021 0.96954 0.85865 0.93523 0.94215 0.93030 0.98901 0.92863 0.91165 0.89863 0.92425 0.89819 0.91495 0.74765 0.65883 0.97500 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 11.19 21.65 0.24 -55.10 16 2 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 3 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.26 -14.09 9.58 84.03 0.81 -13.28 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -29.93 3.00 -699.10 -2.09 -32.02 16 10 C 0.17 8.20 5.31 86.36 0.46 8.66 16 11 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.85 5.17 30.62 0.16 -2.69 16 13 C -0.10 -3.08 2.37 -10.72 -0.03 -3.10 16 14 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 15 C 0.14 3.59 5.07 86.38 0.44 4.03 16 16 N -0.69 -18.31 5.33 -466.38 -2.48 -20.79 16 17 C 0.58 16.18 7.76 86.66 0.67 16.85 16 18 O -0.54 -17.36 13.14 -4.07 -0.05 -17.41 16 19 C 0.01 0.22 6.96 40.41 0.28 0.50 16 20 N -0.49 -9.45 11.06 -305.16 -3.37 -12.82 16 21 C 0.26 2.53 13.19 130.52 1.72 4.25 16 22 O -0.17 -2.47 10.72 0.34 0.00 -2.47 16 23 C -0.10 -2.01 6.75 25.18 0.17 -1.84 16 24 C 0.57 12.63 3.34 71.23 0.24 12.87 16 25 F -0.16 -3.64 17.30 44.97 0.78 -2.86 16 26 F -0.16 -3.29 17.30 44.97 0.78 -2.52 16 27 F -0.14 -3.72 13.48 44.97 0.61 -3.11 16 28 C 0.15 6.02 5.60 86.36 0.48 6.50 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 31 H -0.01 -0.37 8.14 -2.38 -0.02 -0.38 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.42 10.64 7.43 -92.71 -0.69 9.96 16 39 H 0.33 -1.26 8.06 -2.91 -0.02 -1.28 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 Total: -1.00 -71.48 353.66 2.85 -68.63 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.41 Total: 8.39 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.01 Total: 25.82 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -7.71 Total: -120.74 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 2.16 Total: -8.49 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.48 2.85 -68.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023449509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.955 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds