Wall clock time and date at job start Wed Apr 1 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48498 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47020 * 299.99676 * 3 2 1 6 6 H 1.48496 * 109.47274 * 59.99809 * 3 2 1 7 7 C 1.38815 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99924 * 195.68512 * 7 2 1 9 9 N 1.36936 * 119.99798 * 15.68837 * 7 2 1 10 10 C 1.47603 * 118.64653 * 26.50206 * 9 7 2 11 11 C 1.53946 * 112.14340 * 137.86815 * 10 9 7 12 12 C 1.50880 * 110.09620 * 319.43269 * 11 10 9 13 13 C 1.52568 * 109.35264 * 91.88959 * 12 11 10 14 14 C 1.47095 * 114.32900 * 274.98475 * 13 12 11 15 15 H 1.09003 * 109.32968 * 302.71676 * 14 13 12 16 16 N 1.46499 * 109.33279 * 183.06493 * 14 13 12 17 17 C 1.34770 * 120.00638 * 154.92799 * 16 14 13 18 18 O 1.21614 * 119.99575 * 359.72500 * 17 16 14 19 19 C 1.47418 * 120.00603 * 179.72430 * 17 16 14 20 20 C 1.36083 * 126.45267 * 180.02562 * 19 17 16 21 21 O 1.34255 * 106.95042 * 179.97438 * 20 19 17 22 22 C 1.34054 * 108.22793 * 359.97438 * 21 20 19 23 23 C 1.50701 * 125.37628 * 180.02562 * 22 21 20 24 24 F 1.39896 * 109.47049 * 269.97389 * 23 22 21 25 25 F 1.39895 * 109.47380 * 29.97883 * 23 22 21 26 26 F 1.39901 * 109.46568 * 149.97629 * 23 22 21 27 27 N 1.29933 * 109.24140 * 359.74519 * 22 21 20 28 28 C 1.44662 * 118.81307 * 206.50865 * 9 7 2 29 29 H 0.96997 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.95097 * 17.18055 * 10 9 7 31 31 H 1.08997 * 108.94561 * 258.55356 * 10 9 7 32 32 H 1.08999 * 109.36841 * 199.24392 * 11 10 9 33 33 H 1.09005 * 109.26521 * 79.56340 * 11 10 9 34 34 H 1.09000 * 109.48693 * 331.93196 * 12 11 10 35 35 H 1.08996 * 109.49535 * 211.85576 * 12 11 10 36 36 H 1.09001 * 108.50923 * 153.73522 * 13 12 11 37 37 H 1.08990 * 108.39178 * 36.15231 * 13 12 11 38 38 H 0.97009 * 119.99594 * 334.65148 * 16 14 13 39 39 H 1.08005 * 126.52587 * 0.02562 * 20 19 17 40 40 H 1.08998 * 109.62026 * 150.83162 * 28 9 7 41 41 H 1.09001 * 109.32224 * 30.88881 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2195 0.2534 9 7 1.3638 -2.3661 -0.3196 10 6 0.1799 -2.2993 -1.1986 11 6 0.1722 -3.4254 -2.2482 12 6 1.5636 -3.6365 -2.7923 13 6 2.2715 -4.7078 -1.9684 14 6 2.9231 -4.2032 -0.7500 15 1 3.6395 -3.4270 -1.0190 16 7 3.6265 -5.3029 -0.0852 17 6 4.6758 -5.0430 0.7196 18 8 5.0418 -3.8958 0.8901 19 6 5.3799 -6.1491 1.3934 20 6 6.4480 -6.0378 2.2292 21 8 6.7728 -7.2813 2.6171 22 6 5.9231 -8.1381 2.0332 23 6 5.9393 -9.6354 2.2036 24 9 6.7608 -10.2071 1.2261 25 9 6.4329 -9.9550 3.4729 26 9 4.6390 -10.1339 2.0698 27 7 5.0797 -7.4732 1.3018 28 6 1.8662 -3.6126 0.2157 29 1 -0.4850 0.8400 -0.0004 30 1 0.1736 -1.3374 -1.7114 31 1 -0.7193 -2.3787 -0.5877 32 1 -0.4977 -3.1543 -3.0643 33 1 -0.1782 -4.3473 -1.7841 34 1 2.1230 -2.7029 -2.7324 35 1 1.5027 -3.9583 -3.8319 36 1 3.0275 -5.1822 -2.5940 37 1 1.5383 -5.4616 -1.6818 38 1 3.3346 -6.2179 -0.2212 39 1 6.9401 -5.1230 2.5250 40 1 1.0443 -4.3194 0.3303 41 1 2.3247 -3.4291 1.1874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034289417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:29 Heat of formation + Delta-G solvation = -129.762350 kcal Electronic energy + Delta-G solvation = -30881.107651 eV Core-core repulsion = 25963.111023 eV Total energy + Delta-G solvation = -4917.996627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.85088 -48.37856 -48.34402 -44.15068 -39.71139 -37.71696 -35.60125 -34.63757 -33.24058 -31.94104 -30.91957 -30.08663 -27.32859 -26.12599 -24.98338 -23.96581 -23.00293 -22.54696 -20.93049 -20.23497 -19.32832 -19.29190 -19.16618 -18.95924 -17.70297 -17.31777 -16.75044 -16.58836 -16.05689 -15.16509 -15.16145 -15.09329 -14.73098 -14.65359 -14.45289 -14.44698 -14.43182 -14.31381 -13.92445 -13.56403 -13.42685 -13.16889 -12.67048 -12.54421 -12.12796 -12.07184 -11.62234 -11.56632 -11.06346 -10.95583 -10.80268 -10.55911 -10.17231 -10.13853 -10.02074 -9.87345 -9.73771 -9.62860 -9.58167 -8.89773 -8.32946 -6.64167 -5.74482 -3.18126 0.40876 1.03113 1.25943 2.15266 2.69083 3.10758 3.19930 3.40705 3.48872 3.53208 3.54673 3.58924 4.12434 4.35469 4.56239 4.68046 4.98248 5.22669 5.25727 5.35071 5.45187 5.52746 5.73126 5.96947 6.01462 6.14545 6.28393 6.38386 6.52822 6.59527 6.61366 6.64669 6.72926 6.82012 6.91821 7.07106 7.45852 7.65753 7.73625 7.92147 8.27295 8.51581 9.28217 9.93168 10.37394 11.33154 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.002598 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.657724 B =10774.598757 C =11749.253897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.583 5.583 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.113 3.887 15 H 0.091 0.909 16 N -0.700 5.700 17 C 0.594 3.406 18 O -0.518 6.518 19 C -0.060 4.060 20 C 0.053 3.947 21 O -0.169 6.169 22 C 0.087 3.913 23 C 0.588 3.412 24 F -0.153 7.153 25 F -0.156 7.156 26 F -0.141 7.141 27 N -0.389 5.389 28 C 0.157 3.843 29 H 0.252 0.748 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.401 0.599 39 H 0.249 0.751 40 H 0.033 0.967 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.235 -19.793 1.759 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.007 3.993 15 H 0.109 0.891 16 N -0.350 5.350 17 C 0.377 3.623 18 O -0.393 6.393 19 C -0.183 4.183 20 C -0.021 4.021 21 O -0.052 6.052 22 C -0.122 4.122 23 C 0.532 3.468 24 F -0.135 7.135 25 F -0.137 7.137 26 F -0.122 7.122 27 N -0.121 5.121 28 C 0.027 3.973 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.265 0.735 40 H 0.052 0.948 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.872 -19.150 1.550 22.076 hybrid contribution 0.788 0.500 0.358 1.000 sum 11.660 -18.650 1.907 22.077 Atomic orbital electron populations 1.70091 1.05201 1.25247 1.54458 1.25023 0.95253 0.98346 1.00774 0.86253 0.79614 0.84015 0.77161 1.20115 1.21648 1.21806 1.19349 0.92720 0.84689 1.41766 0.91193 1.43614 1.32158 1.01468 1.53144 1.21066 0.88428 0.95837 0.89612 1.22086 0.95891 1.00666 0.99653 1.20823 0.97056 0.99343 0.96576 1.20581 0.99371 0.99063 0.96107 1.21411 0.96150 0.87733 0.94031 0.89053 1.46018 1.30712 1.11468 1.46761 1.16552 0.80516 0.85720 0.79527 1.90928 1.66267 1.19657 1.62451 1.22280 1.00253 0.90743 1.04988 1.25810 0.96067 0.85779 0.94426 1.84400 1.48365 1.16159 1.56296 1.25405 0.92576 0.93852 1.00403 1.15950 0.75199 0.80733 0.74902 1.93322 1.72349 1.85289 1.62500 1.93305 1.87615 1.93264 1.39538 1.93333 1.35966 1.87459 1.95463 1.70658 1.21623 1.03748 1.16101 1.20928 0.93409 0.88584 0.94346 0.93816 0.90603 0.95708 0.92859 0.93641 0.90422 0.93305 0.93278 0.92639 0.76452 0.73525 0.94832 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.12 11.01 55.49 0.61 -25.51 16 2 C 0.00 0.12 4.87 -17.43 -0.08 0.03 16 3 Si 0.90 22.02 29.58 -169.99 -5.03 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.26 -7.01 9.45 -15.06 -0.14 -7.16 16 8 H 0.07 1.98 7.88 -52.49 -0.41 1.56 16 9 N -0.58 -14.26 2.27 -172.03 -0.39 -14.65 16 10 C 0.18 4.09 4.66 -2.94 -0.01 4.07 16 11 C -0.14 -2.60 5.70 -27.30 -0.16 -2.76 16 12 C -0.10 -1.67 5.51 -28.02 -0.15 -1.82 16 13 C -0.11 -1.74 4.55 -29.79 -0.14 -1.87 16 14 C 0.11 1.99 2.34 -69.78 -0.16 1.82 16 15 H 0.09 1.89 7.57 -51.93 -0.39 1.50 16 16 N -0.70 -10.47 5.05 -56.70 -0.29 -10.75 16 17 C 0.59 9.27 7.75 -12.53 -0.10 9.17 16 18 O -0.52 -9.89 16.55 5.27 0.09 -9.80 16 19 C -0.06 -0.75 6.99 -83.02 -0.58 -1.33 16 20 C 0.05 0.51 11.94 29.96 0.36 0.86 16 21 O -0.17 -1.59 10.70 6.50 0.07 -1.52 16 22 C 0.09 0.89 7.53 -13.08 -0.10 0.79 16 23 C 0.59 4.97 3.57 36.01 0.13 5.10 16 24 F -0.15 -1.27 17.30 2.25 0.04 -1.23 16 25 F -0.16 -1.25 17.28 2.25 0.04 -1.21 16 26 F -0.14 -1.26 17.23 2.25 0.04 -1.22 16 27 N -0.39 -4.61 10.96 -7.65 -0.08 -4.69 16 28 C 0.16 3.30 5.23 -4.04 -0.02 3.28 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.97 6.33 -51.93 -0.33 1.65 16 31 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 34 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 38 H 0.40 5.12 8.31 -40.82 -0.34 4.78 16 39 H 0.25 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 41 H 0.05 1.12 7.97 -51.93 -0.41 0.71 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -30.98 356.44 -5.39 -36.38 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.70 Total: 1.65 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.16 Total: 10.19 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.15 Total: -55.61 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.16 Total: -11.32 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.12 Total: -3.66 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.98 -5.39 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034289417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.384 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds