Wall clock time and date at job start Wed Apr 1 2020 04:12:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00049 * 2 1
4 4 H 1.48498 * 109.46843 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47020 * 299.99676 * 3 2 1
6 6 H 1.48496 * 109.47274 * 59.99809 * 3 2 1
7 7 C 1.38815 * 119.99915 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99924 * 195.68512 * 7 2 1
9 9 N 1.36936 * 119.99798 * 15.68837 * 7 2 1
10 10 C 1.47603 * 118.64653 * 26.50206 * 9 7 2
11 11 C 1.53946 * 112.14340 * 137.86815 * 10 9 7
12 12 C 1.50880 * 110.09620 * 319.43269 * 11 10 9
13 13 C 1.52568 * 109.35264 * 91.88959 * 12 11 10
14 14 C 1.47095 * 114.32900 * 274.98475 * 13 12 11
15 15 H 1.09003 * 109.32968 * 302.71676 * 14 13 12
16 16 N 1.46499 * 109.33279 * 183.06493 * 14 13 12
17 17 C 1.34770 * 120.00638 * 154.92799 * 16 14 13
18 18 O 1.21614 * 119.99575 * 359.72500 * 17 16 14
19 19 C 1.47418 * 120.00603 * 179.72430 * 17 16 14
20 20 C 1.36083 * 126.45267 * 180.02562 * 19 17 16
21 21 O 1.34255 * 106.95042 * 179.97438 * 20 19 17
22 22 C 1.34054 * 108.22793 * 359.97438 * 21 20 19
23 23 C 1.50701 * 125.37628 * 180.02562 * 22 21 20
24 24 F 1.39896 * 109.47049 * 269.97389 * 23 22 21
25 25 F 1.39895 * 109.47380 * 29.97883 * 23 22 21
26 26 F 1.39901 * 109.46568 * 149.97629 * 23 22 21
27 27 N 1.29933 * 109.24140 * 359.74519 * 22 21 20
28 28 C 1.44662 * 118.81307 * 206.50865 * 9 7 2
29 29 H 0.96997 * 119.99803 * 0.02562 * 1 2 3
30 30 H 1.09002 * 108.95097 * 17.18055 * 10 9 7
31 31 H 1.08997 * 108.94561 * 258.55356 * 10 9 7
32 32 H 1.08999 * 109.36841 * 199.24392 * 11 10 9
33 33 H 1.09005 * 109.26521 * 79.56340 * 11 10 9
34 34 H 1.09000 * 109.48693 * 331.93196 * 12 11 10
35 35 H 1.08996 * 109.49535 * 211.85576 * 12 11 10
36 36 H 1.09001 * 108.50923 * 153.73522 * 13 12 11
37 37 H 1.08990 * 108.39178 * 36.15231 * 13 12 11
38 38 H 0.97009 * 119.99594 * 334.65148 * 16 14 13
39 39 H 1.08005 * 126.52587 * 0.02562 * 20 19 17
40 40 H 1.08998 * 109.62026 * 150.83162 * 28 9 7
41 41 H 1.09001 * 109.32224 * 30.88881 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8915 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0601 -1.2195 0.2534
9 7 1.3638 -2.3661 -0.3196
10 6 0.1799 -2.2993 -1.1986
11 6 0.1722 -3.4254 -2.2482
12 6 1.5636 -3.6365 -2.7923
13 6 2.2715 -4.7078 -1.9684
14 6 2.9231 -4.2032 -0.7500
15 1 3.6395 -3.4270 -1.0190
16 7 3.6265 -5.3029 -0.0852
17 6 4.6758 -5.0430 0.7196
18 8 5.0418 -3.8958 0.8901
19 6 5.3799 -6.1491 1.3934
20 6 6.4480 -6.0378 2.2292
21 8 6.7728 -7.2813 2.6171
22 6 5.9231 -8.1381 2.0332
23 6 5.9393 -9.6354 2.2036
24 9 6.7608 -10.2071 1.2261
25 9 6.4329 -9.9550 3.4729
26 9 4.6390 -10.1339 2.0698
27 7 5.0797 -7.4732 1.3018
28 6 1.8662 -3.6126 0.2157
29 1 -0.4850 0.8400 -0.0004
30 1 0.1736 -1.3374 -1.7114
31 1 -0.7193 -2.3787 -0.5877
32 1 -0.4977 -3.1543 -3.0643
33 1 -0.1782 -4.3473 -1.7841
34 1 2.1230 -2.7029 -2.7324
35 1 1.5027 -3.9583 -3.8319
36 1 3.0275 -5.1822 -2.5940
37 1 1.5383 -5.4616 -1.6818
38 1 3.3346 -6.2179 -0.2212
39 1 6.9401 -5.1230 2.5250
40 1 1.0443 -4.3194 0.3303
41 1 2.3247 -3.4291 1.1874
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034289417.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:29
Heat of formation + Delta-G solvation = -129.762350 kcal
Electronic energy + Delta-G solvation = -30881.107651 eV
Core-core repulsion = 25963.111023 eV
Total energy + Delta-G solvation = -4917.996627 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-50.85088 -48.37856 -48.34402 -44.15068 -39.71139 -37.71696 -35.60125 -34.63757
-33.24058 -31.94104 -30.91957 -30.08663 -27.32859 -26.12599 -24.98338 -23.96581
-23.00293 -22.54696 -20.93049 -20.23497 -19.32832 -19.29190 -19.16618 -18.95924
-17.70297 -17.31777 -16.75044 -16.58836 -16.05689 -15.16509 -15.16145 -15.09329
-14.73098 -14.65359 -14.45289 -14.44698 -14.43182 -14.31381 -13.92445 -13.56403
-13.42685 -13.16889 -12.67048 -12.54421 -12.12796 -12.07184 -11.62234 -11.56632
-11.06346 -10.95583 -10.80268 -10.55911 -10.17231 -10.13853 -10.02074 -9.87345
-9.73771 -9.62860 -9.58167 -8.89773 -8.32946 -6.64167 -5.74482 -3.18126
0.40876 1.03113 1.25943 2.15266 2.69083 3.10758 3.19930 3.40705
3.48872 3.53208 3.54673 3.58924 4.12434 4.35469 4.56239 4.68046
4.98248 5.22669 5.25727 5.35071 5.45187 5.52746 5.73126 5.96947
6.01462 6.14545 6.28393 6.38386 6.52822 6.59527 6.61366 6.64669
6.72926 6.82012 6.91821 7.07106 7.45852 7.65753 7.73625 7.92147
8.27295 8.51581 9.28217 9.93168 10.37394 11.33154
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017489 B = 0.002598 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1600.657724 B =10774.598757 C =11749.253897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.004 3.996
3 Si 0.900 3.100
4 H -0.276 1.276
5 H -0.290 1.290
6 H -0.291 1.291
7 C -0.256 4.256
8 H 0.070 0.930
9 N -0.583 5.583
10 C 0.175 3.825
11 C -0.144 4.144
12 C -0.100 4.100
13 C -0.113 4.113
14 C 0.113 3.887
15 H 0.091 0.909
16 N -0.700 5.700
17 C 0.594 3.406
18 O -0.518 6.518
19 C -0.060 4.060
20 C 0.053 3.947
21 O -0.169 6.169
22 C 0.087 3.913
23 C 0.588 3.412
24 F -0.153 7.153
25 F -0.156 7.156
26 F -0.141 7.141
27 N -0.389 5.389
28 C 0.157 3.843
29 H 0.252 0.748
30 H 0.076 0.924
31 H 0.025 0.975
32 H 0.053 0.947
33 H 0.045 0.955
34 H 0.077 0.923
35 H 0.048 0.952
36 H 0.048 0.952
37 H 0.055 0.945
38 H 0.401 0.599
39 H 0.249 0.751
40 H 0.033 0.967
41 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.235 -19.793 1.759 22.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.194 4.194
3 Si 0.730 3.270
4 H -0.201 1.201
5 H -0.216 1.216
6 H -0.218 1.218
7 C -0.385 4.385
8 H 0.088 0.912
9 N -0.304 5.304
10 C 0.051 3.949
11 C -0.183 4.183
12 C -0.138 4.138
13 C -0.151 4.151
14 C 0.007 3.993
15 H 0.109 0.891
16 N -0.350 5.350
17 C 0.377 3.623
18 O -0.393 6.393
19 C -0.183 4.183
20 C -0.021 4.021
21 O -0.052 6.052
22 C -0.122 4.122
23 C 0.532 3.468
24 F -0.135 7.135
25 F -0.137 7.137
26 F -0.122 7.122
27 N -0.121 5.121
28 C 0.027 3.973
29 H 0.062 0.938
30 H 0.094 0.906
31 H 0.043 0.957
32 H 0.071 0.929
33 H 0.064 0.936
34 H 0.096 0.904
35 H 0.067 0.933
36 H 0.067 0.933
37 H 0.074 0.926
38 H 0.235 0.765
39 H 0.265 0.735
40 H 0.052 0.948
41 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 10.872 -19.150 1.550 22.076
hybrid contribution 0.788 0.500 0.358 1.000
sum 11.660 -18.650 1.907 22.077
Atomic orbital electron populations
1.70091 1.05201 1.25247 1.54458 1.25023 0.95253 0.98346 1.00774
0.86253 0.79614 0.84015 0.77161 1.20115 1.21648 1.21806 1.19349
0.92720 0.84689 1.41766 0.91193 1.43614 1.32158 1.01468 1.53144
1.21066 0.88428 0.95837 0.89612 1.22086 0.95891 1.00666 0.99653
1.20823 0.97056 0.99343 0.96576 1.20581 0.99371 0.99063 0.96107
1.21411 0.96150 0.87733 0.94031 0.89053 1.46018 1.30712 1.11468
1.46761 1.16552 0.80516 0.85720 0.79527 1.90928 1.66267 1.19657
1.62451 1.22280 1.00253 0.90743 1.04988 1.25810 0.96067 0.85779
0.94426 1.84400 1.48365 1.16159 1.56296 1.25405 0.92576 0.93852
1.00403 1.15950 0.75199 0.80733 0.74902 1.93322 1.72349 1.85289
1.62500 1.93305 1.87615 1.93264 1.39538 1.93333 1.35966 1.87459
1.95463 1.70658 1.21623 1.03748 1.16101 1.20928 0.93409 0.88584
0.94346 0.93816 0.90603 0.95708 0.92859 0.93641 0.90422 0.93305
0.93278 0.92639 0.76452 0.73525 0.94832 0.93312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -26.12 11.01 55.49 0.61 -25.51 16
2 C 0.00 0.12 4.87 -17.43 -0.08 0.03 16
3 Si 0.90 22.02 29.58 -169.99 -5.03 17.00 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16
7 C -0.26 -7.01 9.45 -15.06 -0.14 -7.16 16
8 H 0.07 1.98 7.88 -52.49 -0.41 1.56 16
9 N -0.58 -14.26 2.27 -172.03 -0.39 -14.65 16
10 C 0.18 4.09 4.66 -2.94 -0.01 4.07 16
11 C -0.14 -2.60 5.70 -27.30 -0.16 -2.76 16
12 C -0.10 -1.67 5.51 -28.02 -0.15 -1.82 16
13 C -0.11 -1.74 4.55 -29.79 -0.14 -1.87 16
14 C 0.11 1.99 2.34 -69.78 -0.16 1.82 16
15 H 0.09 1.89 7.57 -51.93 -0.39 1.50 16
16 N -0.70 -10.47 5.05 -56.70 -0.29 -10.75 16
17 C 0.59 9.27 7.75 -12.53 -0.10 9.17 16
18 O -0.52 -9.89 16.55 5.27 0.09 -9.80 16
19 C -0.06 -0.75 6.99 -83.02 -0.58 -1.33 16
20 C 0.05 0.51 11.94 29.96 0.36 0.86 16
21 O -0.17 -1.59 10.70 6.50 0.07 -1.52 16
22 C 0.09 0.89 7.53 -13.08 -0.10 0.79 16
23 C 0.59 4.97 3.57 36.01 0.13 5.10 16
24 F -0.15 -1.27 17.30 2.25 0.04 -1.23 16
25 F -0.16 -1.25 17.28 2.25 0.04 -1.21 16
26 F -0.14 -1.26 17.23 2.25 0.04 -1.22 16
27 N -0.39 -4.61 10.96 -7.65 -0.08 -4.69 16
28 C 0.16 3.30 5.23 -4.04 -0.02 3.28 16
29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
30 H 0.08 1.97 6.33 -51.93 -0.33 1.65 16
31 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16
32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
33 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16
34 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16
35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16
38 H 0.40 5.12 8.31 -40.82 -0.34 4.78 16
39 H 0.25 1.55 8.06 -52.48 -0.42 1.12 16
40 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16
41 H 0.05 1.12 7.97 -51.93 -0.41 0.71 16
LS Contribution 356.44 15.07 5.37 5.37
Total: -1.00 -30.98 356.44 -5.39 -36.38
By element:
Atomic # 1 Polarization: 6.35 SS G_CDS: -4.70 Total: 1.65 kcal
Atomic # 6 Polarization: 11.35 SS G_CDS: -1.16 Total: 10.19 kcal
Atomic # 7 Polarization: -55.46 SS G_CDS: -0.15 Total: -55.61 kcal
Atomic # 8 Polarization: -11.47 SS G_CDS: 0.16 Total: -11.32 kcal
Atomic # 9 Polarization: -3.78 SS G_CDS: 0.12 Total: -3.66 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -30.98 -5.39 -36.38 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034289417.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.384 kcal
(2) G-P(sol) polarization free energy of solvation -30.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds