Wall clock time and date at job start Wed Apr 1 2020 04:12:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00049 * 2 1
4 4 H 1.48498 * 109.46843 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47020 * 299.99676 * 3 2 1
6 6 H 1.48496 * 109.47274 * 59.99809 * 3 2 1
7 7 C 1.38815 * 119.99915 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99924 * 195.68512 * 7 2 1
9 9 N 1.36936 * 119.99798 * 15.68837 * 7 2 1
10 10 C 1.47603 * 118.64653 * 26.50206 * 9 7 2
11 11 C 1.53946 * 112.14340 * 137.86815 * 10 9 7
12 12 C 1.50880 * 110.09620 * 319.43269 * 11 10 9
13 13 C 1.52568 * 109.35264 * 91.88959 * 12 11 10
14 14 C 1.47095 * 114.32900 * 274.98475 * 13 12 11
15 15 H 1.09003 * 109.32968 * 302.71676 * 14 13 12
16 16 N 1.46499 * 109.33279 * 183.06493 * 14 13 12
17 17 C 1.34770 * 120.00638 * 154.92799 * 16 14 13
18 18 O 1.21614 * 119.99575 * 359.72500 * 17 16 14
19 19 C 1.47418 * 120.00603 * 179.72430 * 17 16 14
20 20 C 1.36083 * 126.45267 * 180.02562 * 19 17 16
21 21 O 1.34255 * 106.95042 * 179.97438 * 20 19 17
22 22 C 1.34054 * 108.22793 * 359.97438 * 21 20 19
23 23 C 1.50701 * 125.37628 * 180.02562 * 22 21 20
24 24 F 1.39896 * 109.47049 * 269.97389 * 23 22 21
25 25 F 1.39895 * 109.47380 * 29.97883 * 23 22 21
26 26 F 1.39901 * 109.46568 * 149.97629 * 23 22 21
27 27 N 1.29933 * 109.24140 * 359.74519 * 22 21 20
28 28 C 1.44662 * 118.81307 * 206.50865 * 9 7 2
29 29 H 0.96997 * 119.99803 * 0.02562 * 1 2 3
30 30 H 1.09002 * 108.95097 * 17.18055 * 10 9 7
31 31 H 1.08997 * 108.94561 * 258.55356 * 10 9 7
32 32 H 1.08999 * 109.36841 * 199.24392 * 11 10 9
33 33 H 1.09005 * 109.26521 * 79.56340 * 11 10 9
34 34 H 1.09000 * 109.48693 * 331.93196 * 12 11 10
35 35 H 1.08996 * 109.49535 * 211.85576 * 12 11 10
36 36 H 1.09001 * 108.50923 * 153.73522 * 13 12 11
37 37 H 1.08990 * 108.39178 * 36.15231 * 13 12 11
38 38 H 0.97009 * 119.99594 * 334.65148 * 16 14 13
39 39 H 1.08005 * 126.52587 * 0.02562 * 20 19 17
40 40 H 1.08998 * 109.62026 * 150.83162 * 28 9 7
41 41 H 1.09001 * 109.32224 * 30.88881 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8915 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0601 -1.2195 0.2534
9 7 1.3638 -2.3661 -0.3196
10 6 0.1799 -2.2993 -1.1986
11 6 0.1722 -3.4254 -2.2482
12 6 1.5636 -3.6365 -2.7923
13 6 2.2715 -4.7078 -1.9684
14 6 2.9231 -4.2032 -0.7500
15 1 3.6395 -3.4270 -1.0190
16 7 3.6265 -5.3029 -0.0852
17 6 4.6758 -5.0430 0.7196
18 8 5.0418 -3.8958 0.8901
19 6 5.3799 -6.1491 1.3934
20 6 6.4480 -6.0378 2.2292
21 8 6.7728 -7.2813 2.6171
22 6 5.9231 -8.1381 2.0332
23 6 5.9393 -9.6354 2.2036
24 9 6.7608 -10.2071 1.2261
25 9 6.4329 -9.9550 3.4729
26 9 4.6390 -10.1339 2.0698
27 7 5.0797 -7.4732 1.3018
28 6 1.8662 -3.6126 0.2157
29 1 -0.4850 0.8400 -0.0004
30 1 0.1736 -1.3374 -1.7114
31 1 -0.7193 -2.3787 -0.5877
32 1 -0.4977 -3.1543 -3.0643
33 1 -0.1782 -4.3473 -1.7841
34 1 2.1230 -2.7029 -2.7324
35 1 1.5027 -3.9583 -3.8319
36 1 3.0275 -5.1822 -2.5940
37 1 1.5383 -5.4616 -1.6818
38 1 3.3346 -6.2179 -0.2212
39 1 6.9401 -5.1230 2.5250
40 1 1.0443 -4.3194 0.3303
41 1 2.3247 -3.4291 1.1874
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034289417.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:29
Heat of formation + Delta-G solvation = -152.059422 kcal
Electronic energy + Delta-G solvation = -30882.074524 eV
Core-core repulsion = 25963.111023 eV
Total energy + Delta-G solvation = -4918.963501 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-51.52087 -49.03341 -49.02232 -44.98466 -41.05512 -39.24710 -36.50997 -36.25614
-34.83444 -32.94838 -32.74689 -31.54756 -28.15934 -27.89291 -26.36723 -25.43767
-24.49754 -23.41917 -22.04057 -21.65125 -20.90735 -20.18993 -20.00668 -19.68318
-18.66389 -18.59033 -18.12365 -17.63722 -17.48471 -16.64672 -16.46226 -15.89309
-15.82038 -15.78877 -15.52993 -15.39236 -15.37247 -15.11575 -15.10782 -15.02906
-14.75470 -14.27130 -14.15351 -14.09971 -13.82572 -13.14966 -13.00771 -12.96215
-12.82771 -12.48730 -12.45127 -12.36410 -12.02191 -11.67554 -11.48962 -11.40134
-11.34652 -11.15024 -10.76549 -10.52678 -10.19379 -8.64612 -7.86677 -5.32706
-0.38928 0.28545 0.30334 1.36736 1.42913 1.45204 1.56554 1.88503
2.02073 2.06763 2.51759 2.84814 2.91088 3.18881 3.26781 3.41292
3.72917 3.83757 3.89927 4.09494 4.20444 4.27364 4.33478 4.44102
4.49979 4.70416 4.74662 4.99314 5.03409 5.09800 5.20755 5.23908
5.35088 5.37454 5.59709 5.64418 5.71323 5.73143 5.83894 6.40321
6.45490 7.06925 7.18771 7.93753 8.30354 9.18065
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017489 B = 0.002598 C = 0.002383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1600.657724 B =10774.598757 C =11749.253897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.044 4.044
3 Si 0.959 3.041
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.291 1.291
7 C -0.260 4.260
8 H 0.054 0.946
9 N -0.596 5.596
10 C 0.184 3.816
11 C -0.131 4.131
12 C -0.096 4.096
13 C -0.111 4.111
14 C 0.134 3.866
15 H 0.057 0.943
16 N -0.692 5.692
17 C 0.596 3.404
18 O -0.560 6.560
19 C -0.090 4.090
20 C 0.085 3.915
21 O -0.161 6.161
22 C 0.090 3.910
23 C 0.598 3.402
24 F -0.150 7.150
25 F -0.151 7.151
26 F -0.143 7.143
27 N -0.401 5.401
28 C 0.158 3.842
29 H 0.249 0.751
30 H 0.041 0.959
31 H -0.006 1.006
32 H 0.071 0.929
33 H 0.064 0.936
34 H 0.043 0.957
35 H 0.083 0.917
36 H 0.075 0.925
37 H 0.077 0.923
38 H 0.415 0.585
39 H 0.279 0.721
40 H 0.047 0.953
41 H 0.019 0.981
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.345 -21.962 1.207 25.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.240 4.240
3 Si 0.788 3.212
4 H -0.199 1.199
5 H -0.212 1.212
6 H -0.218 1.218
7 C -0.391 4.391
8 H 0.072 0.928
9 N -0.318 5.318
10 C 0.059 3.941
11 C -0.170 4.170
12 C -0.134 4.134
13 C -0.148 4.148
14 C 0.027 3.973
15 H 0.075 0.925
16 N -0.342 5.342
17 C 0.381 3.619
18 O -0.439 6.439
19 C -0.212 4.212
20 C 0.010 3.990
21 O -0.044 6.044
22 C -0.121 4.121
23 C 0.542 3.458
24 F -0.131 7.131
25 F -0.132 7.132
26 F -0.124 7.124
27 N -0.133 5.133
28 C 0.030 3.970
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.012 0.988
32 H 0.090 0.910
33 H 0.082 0.918
34 H 0.061 0.939
35 H 0.102 0.898
36 H 0.093 0.907
37 H 0.096 0.904
38 H 0.252 0.748
39 H 0.294 0.706
40 H 0.066 0.934
41 H 0.037 0.963
Dipole moment (debyes) X Y Z Total
from point charges 11.988 -21.388 0.988 24.538
hybrid contribution 0.487 1.103 0.617 1.355
sum 12.475 -20.285 1.605 23.868
Atomic orbital electron populations
1.70228 1.06280 1.25590 1.55724 1.25671 0.96028 1.01053 1.01215
0.85328 0.78468 0.80424 0.77010 1.19879 1.21152 1.21819 1.19420
0.92204 0.86263 1.41196 0.92823 1.43750 1.32326 1.01788 1.53952
1.20873 0.86691 0.96574 0.89956 1.21947 0.97549 0.99036 0.98482
1.20795 0.95529 0.98342 0.98779 1.20534 1.00378 0.98974 0.94949
1.20858 0.94386 0.87876 0.94199 0.92507 1.45829 1.30486 1.11425
1.46500 1.16882 0.80209 0.85967 0.78851 1.90907 1.67460 1.21682
1.63845 1.21812 1.01918 0.90313 1.07151 1.26365 0.94247 0.86470
0.91888 1.84453 1.47991 1.16003 1.55939 1.25676 0.92101 0.94519
0.99772 1.15746 0.75140 0.79856 0.75084 1.93332 1.72242 1.85092
1.62448 1.93321 1.87529 1.93109 1.39227 1.93333 1.36216 1.87363
1.95494 1.70570 1.22357 1.03516 1.16858 1.20998 0.94430 0.87749
0.93854 0.94140 0.94032 0.98785 0.91040 0.91779 0.93851 0.89829
0.90662 0.90433 0.74771 0.70613 0.93447 0.96289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.69 11.01 21.65 0.24 -55.45 16
2 C -0.04 -2.54 4.87 84.86 0.41 -2.13 16
3 Si 0.96 46.61 29.58 68.60 2.03 48.64 16
4 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16
5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16
6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
7 C -0.26 -14.88 9.45 84.03 0.79 -14.08 16
8 H 0.05 3.19 7.88 -2.91 -0.02 3.16 16
9 N -0.60 -30.14 2.27 -698.18 -1.59 -31.73 16
10 C 0.18 8.78 4.66 86.49 0.40 9.19 16
11 C -0.13 -4.54 5.70 30.22 0.17 -4.37 16
12 C -0.10 -3.02 5.51 29.76 0.16 -2.86 16
13 C -0.11 -3.11 4.55 28.61 0.13 -2.98 16
14 C 0.13 4.67 2.34 43.79 0.10 4.77 16
15 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16
16 N -0.69 -20.09 5.05 -451.56 -2.28 -22.38 16
17 C 0.60 18.43 7.75 86.66 0.67 19.10 16
18 O -0.56 -21.86 16.55 -4.08 -0.07 -21.93 16
19 C -0.09 -2.12 6.99 40.40 0.28 -1.84 16
20 C 0.08 1.42 11.94 67.32 0.80 2.23 16
21 O -0.16 -2.61 10.70 0.36 0.00 -2.61 16
22 C 0.09 1.63 7.53 88.39 0.67 2.30 16
23 C 0.60 8.82 3.57 71.24 0.25 9.08 16
24 F -0.15 -2.16 17.30 44.97 0.78 -1.38 16
25 F -0.15 -2.07 17.28 44.97 0.78 -1.30 16
26 F -0.14 -2.28 17.23 44.97 0.77 -1.51 16
27 N -0.40 -8.78 10.96 -293.03 -3.21 -11.99 16
28 C 0.16 6.77 5.23 87.36 0.46 7.23 16
29 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16
30 H 0.04 2.24 6.33 -2.39 -0.02 2.23 16
31 H -0.01 -0.32 8.03 -2.39 -0.02 -0.33 16
32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
33 H 0.06 1.99 7.31 -2.38 -0.02 1.98 16
34 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16
35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
37 H 0.08 1.90 7.34 -2.39 -0.02 1.88 16
38 H 0.42 9.79 8.31 -92.70 -0.77 9.02 16
39 H 0.28 2.73 8.06 -2.91 -0.02 2.71 16
40 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16
41 H 0.02 0.90 7.97 -2.39 -0.02 0.88 16
Total: -1.00 -70.55 356.44 3.10 -67.45
By element:
Atomic # 1 Polarization: 8.21 SS G_CDS: 0.33 Total: 8.54 kcal
Atomic # 6 Polarization: 20.32 SS G_CDS: 5.32 Total: 25.64 kcal
Atomic # 7 Polarization: -114.70 SS G_CDS: -6.84 Total: -121.54 kcal
Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal
Atomic # 9 Polarization: -6.52 SS G_CDS: 2.33 Total: -4.19 kcal
Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal
Total: -70.55 3.10 -67.45 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034289417.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.605 kcal
(2) G-P(sol) polarization free energy of solvation -70.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds