Wall clock time and date at job start Wed Apr 1 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48498 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47020 * 299.99676 * 3 2 1 6 6 H 1.48496 * 109.47274 * 59.99809 * 3 2 1 7 7 C 1.38815 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99924 * 195.68512 * 7 2 1 9 9 N 1.36936 * 119.99798 * 15.68837 * 7 2 1 10 10 C 1.47603 * 118.64653 * 26.50206 * 9 7 2 11 11 C 1.53946 * 112.14340 * 137.86815 * 10 9 7 12 12 C 1.50880 * 110.09620 * 319.43269 * 11 10 9 13 13 C 1.52568 * 109.35264 * 91.88959 * 12 11 10 14 14 C 1.47095 * 114.32900 * 274.98475 * 13 12 11 15 15 H 1.09003 * 109.32968 * 302.71676 * 14 13 12 16 16 N 1.46499 * 109.33279 * 183.06493 * 14 13 12 17 17 C 1.34770 * 120.00638 * 154.92799 * 16 14 13 18 18 O 1.21614 * 119.99575 * 359.72500 * 17 16 14 19 19 C 1.47418 * 120.00603 * 179.72430 * 17 16 14 20 20 C 1.36083 * 126.45267 * 180.02562 * 19 17 16 21 21 O 1.34255 * 106.95042 * 179.97438 * 20 19 17 22 22 C 1.34054 * 108.22793 * 359.97438 * 21 20 19 23 23 C 1.50701 * 125.37628 * 180.02562 * 22 21 20 24 24 F 1.39896 * 109.47049 * 269.97389 * 23 22 21 25 25 F 1.39895 * 109.47380 * 29.97883 * 23 22 21 26 26 F 1.39901 * 109.46568 * 149.97629 * 23 22 21 27 27 N 1.29933 * 109.24140 * 359.74519 * 22 21 20 28 28 C 1.44662 * 118.81307 * 206.50865 * 9 7 2 29 29 H 0.96997 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.95097 * 17.18055 * 10 9 7 31 31 H 1.08997 * 108.94561 * 258.55356 * 10 9 7 32 32 H 1.08999 * 109.36841 * 199.24392 * 11 10 9 33 33 H 1.09005 * 109.26521 * 79.56340 * 11 10 9 34 34 H 1.09000 * 109.48693 * 331.93196 * 12 11 10 35 35 H 1.08996 * 109.49535 * 211.85576 * 12 11 10 36 36 H 1.09001 * 108.50923 * 153.73522 * 13 12 11 37 37 H 1.08990 * 108.39178 * 36.15231 * 13 12 11 38 38 H 0.97009 * 119.99594 * 334.65148 * 16 14 13 39 39 H 1.08005 * 126.52587 * 0.02562 * 20 19 17 40 40 H 1.08998 * 109.62026 * 150.83162 * 28 9 7 41 41 H 1.09001 * 109.32224 * 30.88881 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2195 0.2534 9 7 1.3638 -2.3661 -0.3196 10 6 0.1799 -2.2993 -1.1986 11 6 0.1722 -3.4254 -2.2482 12 6 1.5636 -3.6365 -2.7923 13 6 2.2715 -4.7078 -1.9684 14 6 2.9231 -4.2032 -0.7500 15 1 3.6395 -3.4270 -1.0190 16 7 3.6265 -5.3029 -0.0852 17 6 4.6758 -5.0430 0.7196 18 8 5.0418 -3.8958 0.8901 19 6 5.3799 -6.1491 1.3934 20 6 6.4480 -6.0378 2.2292 21 8 6.7728 -7.2813 2.6171 22 6 5.9231 -8.1381 2.0332 23 6 5.9393 -9.6354 2.2036 24 9 6.7608 -10.2071 1.2261 25 9 6.4329 -9.9550 3.4729 26 9 4.6390 -10.1339 2.0698 27 7 5.0797 -7.4732 1.3018 28 6 1.8662 -3.6126 0.2157 29 1 -0.4850 0.8400 -0.0004 30 1 0.1736 -1.3374 -1.7114 31 1 -0.7193 -2.3787 -0.5877 32 1 -0.4977 -3.1543 -3.0643 33 1 -0.1782 -4.3473 -1.7841 34 1 2.1230 -2.7029 -2.7324 35 1 1.5027 -3.9583 -3.8319 36 1 3.0275 -5.1822 -2.5940 37 1 1.5383 -5.4616 -1.6818 38 1 3.3346 -6.2179 -0.2212 39 1 6.9401 -5.1230 2.5250 40 1 1.0443 -4.3194 0.3303 41 1 2.3247 -3.4291 1.1874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034289417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:29 Heat of formation + Delta-G solvation = -152.059422 kcal Electronic energy + Delta-G solvation = -30882.074524 eV Core-core repulsion = 25963.111023 eV Total energy + Delta-G solvation = -4918.963501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.52087 -49.03341 -49.02232 -44.98466 -41.05512 -39.24710 -36.50997 -36.25614 -34.83444 -32.94838 -32.74689 -31.54756 -28.15934 -27.89291 -26.36723 -25.43767 -24.49754 -23.41917 -22.04057 -21.65125 -20.90735 -20.18993 -20.00668 -19.68318 -18.66389 -18.59033 -18.12365 -17.63722 -17.48471 -16.64672 -16.46226 -15.89309 -15.82038 -15.78877 -15.52993 -15.39236 -15.37247 -15.11575 -15.10782 -15.02906 -14.75470 -14.27130 -14.15351 -14.09971 -13.82572 -13.14966 -13.00771 -12.96215 -12.82771 -12.48730 -12.45127 -12.36410 -12.02191 -11.67554 -11.48962 -11.40134 -11.34652 -11.15024 -10.76549 -10.52678 -10.19379 -8.64612 -7.86677 -5.32706 -0.38928 0.28545 0.30334 1.36736 1.42913 1.45204 1.56554 1.88503 2.02073 2.06763 2.51759 2.84814 2.91088 3.18881 3.26781 3.41292 3.72917 3.83757 3.89927 4.09494 4.20444 4.27364 4.33478 4.44102 4.49979 4.70416 4.74662 4.99314 5.03409 5.09800 5.20755 5.23908 5.35088 5.37454 5.59709 5.64418 5.71323 5.73143 5.83894 6.40321 6.45490 7.06925 7.18771 7.93753 8.30354 9.18065 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.002598 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.657724 B =10774.598757 C =11749.253897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.054 0.946 9 N -0.596 5.596 10 C 0.184 3.816 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.111 4.111 14 C 0.134 3.866 15 H 0.057 0.943 16 N -0.692 5.692 17 C 0.596 3.404 18 O -0.560 6.560 19 C -0.090 4.090 20 C 0.085 3.915 21 O -0.161 6.161 22 C 0.090 3.910 23 C 0.598 3.402 24 F -0.150 7.150 25 F -0.151 7.151 26 F -0.143 7.143 27 N -0.401 5.401 28 C 0.158 3.842 29 H 0.249 0.751 30 H 0.041 0.959 31 H -0.006 1.006 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.415 0.585 39 H 0.279 0.721 40 H 0.047 0.953 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.345 -21.962 1.207 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.072 0.928 9 N -0.318 5.318 10 C 0.059 3.941 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.148 4.148 14 C 0.027 3.973 15 H 0.075 0.925 16 N -0.342 5.342 17 C 0.381 3.619 18 O -0.439 6.439 19 C -0.212 4.212 20 C 0.010 3.990 21 O -0.044 6.044 22 C -0.121 4.121 23 C 0.542 3.458 24 F -0.131 7.131 25 F -0.132 7.132 26 F -0.124 7.124 27 N -0.133 5.133 28 C 0.030 3.970 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.252 0.748 39 H 0.294 0.706 40 H 0.066 0.934 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.988 -21.388 0.988 24.538 hybrid contribution 0.487 1.103 0.617 1.355 sum 12.475 -20.285 1.605 23.868 Atomic orbital electron populations 1.70228 1.06280 1.25590 1.55724 1.25671 0.96028 1.01053 1.01215 0.85328 0.78468 0.80424 0.77010 1.19879 1.21152 1.21819 1.19420 0.92204 0.86263 1.41196 0.92823 1.43750 1.32326 1.01788 1.53952 1.20873 0.86691 0.96574 0.89956 1.21947 0.97549 0.99036 0.98482 1.20795 0.95529 0.98342 0.98779 1.20534 1.00378 0.98974 0.94949 1.20858 0.94386 0.87876 0.94199 0.92507 1.45829 1.30486 1.11425 1.46500 1.16882 0.80209 0.85967 0.78851 1.90907 1.67460 1.21682 1.63845 1.21812 1.01918 0.90313 1.07151 1.26365 0.94247 0.86470 0.91888 1.84453 1.47991 1.16003 1.55939 1.25676 0.92101 0.94519 0.99772 1.15746 0.75140 0.79856 0.75084 1.93332 1.72242 1.85092 1.62448 1.93321 1.87529 1.93109 1.39227 1.93333 1.36216 1.87363 1.95494 1.70570 1.22357 1.03516 1.16858 1.20998 0.94430 0.87749 0.93854 0.94140 0.94032 0.98785 0.91040 0.91779 0.93851 0.89829 0.90662 0.90433 0.74771 0.70613 0.93447 0.96289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 11.01 21.65 0.24 -55.45 16 2 C -0.04 -2.54 4.87 84.86 0.41 -2.13 16 3 Si 0.96 46.61 29.58 68.60 2.03 48.64 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.26 -14.88 9.45 84.03 0.79 -14.08 16 8 H 0.05 3.19 7.88 -2.91 -0.02 3.16 16 9 N -0.60 -30.14 2.27 -698.18 -1.59 -31.73 16 10 C 0.18 8.78 4.66 86.49 0.40 9.19 16 11 C -0.13 -4.54 5.70 30.22 0.17 -4.37 16 12 C -0.10 -3.02 5.51 29.76 0.16 -2.86 16 13 C -0.11 -3.11 4.55 28.61 0.13 -2.98 16 14 C 0.13 4.67 2.34 43.79 0.10 4.77 16 15 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 16 N -0.69 -20.09 5.05 -451.56 -2.28 -22.38 16 17 C 0.60 18.43 7.75 86.66 0.67 19.10 16 18 O -0.56 -21.86 16.55 -4.08 -0.07 -21.93 16 19 C -0.09 -2.12 6.99 40.40 0.28 -1.84 16 20 C 0.08 1.42 11.94 67.32 0.80 2.23 16 21 O -0.16 -2.61 10.70 0.36 0.00 -2.61 16 22 C 0.09 1.63 7.53 88.39 0.67 2.30 16 23 C 0.60 8.82 3.57 71.24 0.25 9.08 16 24 F -0.15 -2.16 17.30 44.97 0.78 -1.38 16 25 F -0.15 -2.07 17.28 44.97 0.78 -1.30 16 26 F -0.14 -2.28 17.23 44.97 0.77 -1.51 16 27 N -0.40 -8.78 10.96 -293.03 -3.21 -11.99 16 28 C 0.16 6.77 5.23 87.36 0.46 7.23 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 30 H 0.04 2.24 6.33 -2.39 -0.02 2.23 16 31 H -0.01 -0.32 8.03 -2.39 -0.02 -0.33 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.99 7.31 -2.38 -0.02 1.98 16 34 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.90 7.34 -2.39 -0.02 1.88 16 38 H 0.42 9.79 8.31 -92.70 -0.77 9.02 16 39 H 0.28 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 41 H 0.02 0.90 7.97 -2.39 -0.02 0.88 16 Total: -1.00 -70.55 356.44 3.10 -67.45 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.33 Total: 8.54 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 5.32 Total: 25.64 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -6.84 Total: -121.54 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 2.33 Total: -4.19 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -70.55 3.10 -67.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034289417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.605 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds