Wall clock time and date at job start Wed Apr 1 2020 04:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46671 * 2 1 4 4 C 1.34783 * 119.99318 * 60.02807 * 3 2 1 5 5 O 1.21582 * 120.00178 * 0.02562 * 4 3 2 6 6 C 1.47511 * 119.99486 * 180.02562 * 4 3 2 7 7 C 1.36826 * 126.94271 * 179.97438 * 6 4 3 8 8 C 1.41266 * 103.84893 * 179.97438 * 7 6 4 9 9 C 1.50697 * 126.70682 * 179.97438 * 8 7 6 10 10 F 1.39895 * 109.47209 * 89.99746 * 9 8 7 11 11 F 1.39897 * 109.47201 * 210.00084 * 9 8 7 12 12 F 1.39901 * 109.46881 * 329.99928 * 9 8 7 13 13 N 1.30131 * 106.58891 * 0.02562 * 8 7 6 14 14 O 1.20896 * 111.98052 * 359.97438 * 13 8 7 15 15 C 1.53047 * 109.45067 * 119.96962 * 2 1 3 16 16 C 1.53189 * 109.31417 * 181.37281 * 15 2 1 17 17 N 1.46924 * 108.77909 * 305.36842 * 16 15 2 18 18 C 1.36936 * 120.62885 * 233.63250 * 17 16 15 19 19 H 1.07999 * 120.00311 * 27.66107 * 18 17 16 20 20 C 1.38821 * 119.99720 * 207.66228 * 18 17 16 21 21 N 1.31619 * 119.99930 * 17.35864 * 20 18 17 22 22 Si 1.86799 * 119.99838 * 197.36012 * 20 18 17 23 23 H 1.48498 * 109.47367 * 60.00101 * 22 20 18 24 24 H 1.48503 * 109.46855 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47025 * 299.99984 * 22 20 18 26 26 C 1.46927 * 118.73970 * 53.60297 * 17 16 15 27 27 C 1.53042 * 109.45747 * 240.02760 * 2 1 3 28 28 H 1.08996 * 109.47147 * 59.99275 * 1 2 3 29 29 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47015 * 299.99926 * 1 2 3 31 31 H 0.96994 * 120.00499 * 240.03313 * 3 2 1 32 32 H 1.08002 * 128.07324 * 0.02562 * 7 6 4 33 33 H 1.09000 * 109.49589 * 301.32748 * 15 2 1 34 34 H 1.09001 * 109.49079 * 61.42455 * 15 2 1 35 35 H 1.08998 * 109.58994 * 185.57883 * 16 15 2 36 36 H 1.09002 * 109.58319 * 65.15228 * 16 15 2 37 37 H 0.96999 * 120.00062 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.58904 * 186.60456 * 26 17 16 39 39 H 1.09003 * 109.70234 * 66.24968 * 26 17 16 40 40 H 1.08993 * 109.50066 * 298.58364 * 27 2 1 41 41 H 1.09003 * 109.49703 * 58.65053 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2108 1.0112 5 8 0.9947 1.8127 1.9235 6 6 2.1840 3.6018 1.0110 7 6 1.9425 4.5593 1.9580 8 6 2.6367 5.6922 1.4782 9 6 2.7129 7.0467 2.1344 10 9 3.8132 7.0855 2.9975 11 9 2.8552 8.0331 1.1527 12 9 1.5409 7.2788 2.8623 13 7 3.1967 5.3380 0.3582 14 8 2.9606 4.1856 0.0789 15 6 2.0396 -0.7209 1.2502 16 6 3.5711 -0.6891 1.2644 17 7 4.0676 -1.2494 0.0002 18 6 4.9752 -2.2748 0.0003 19 1 5.0077 -2.9671 0.8286 20 6 5.8534 -2.4244 -1.0643 21 7 6.0600 -1.4227 -1.8927 22 14 6.7420 -4.0474 -1.3211 23 1 5.7462 -5.1304 -1.5226 24 1 7.6162 -3.9491 -2.5175 25 1 7.5703 -4.3525 -0.1270 26 6 3.5713 -0.6891 -1.2641 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.5754 1.6987 -0.7277 32 1 1.3582 4.4697 2.8619 33 1 1.6570 -0.2208 2.1399 34 1 1.6973 -1.7557 1.2382 35 1 3.9412 -1.2852 2.0986 36 1 3.9142 0.3403 1.3675 37 1 6.6740 -1.5271 -2.6364 38 1 3.9416 -1.2851 -2.0983 39 1 3.9144 0.3401 -1.3697 40 1 1.6975 -1.7556 -1.2383 41 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045469368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:06 Heat of formation + Delta-G solvation = -92.776826 kcal Electronic energy + Delta-G solvation = -31400.817307 eV Core-core repulsion = 26484.424492 eV Total energy + Delta-G solvation = -4916.392814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.62833 -48.15846 -48.11148 -45.69093 -40.37546 -37.64792 -35.15025 -34.53261 -32.99579 -31.82121 -30.82242 -30.01506 -27.66236 -27.52823 -24.84073 -24.08054 -23.49612 -22.41774 -21.57443 -20.82585 -19.39559 -19.13884 -18.87832 -18.77416 -18.16860 -17.49068 -16.96074 -16.31769 -15.32600 -15.05086 -14.98193 -14.91427 -14.90480 -14.53643 -14.47264 -14.24846 -14.24636 -14.03857 -13.90653 -13.51917 -13.35237 -13.20284 -12.96467 -12.55687 -12.38437 -11.99728 -11.77113 -11.43669 -11.36763 -11.32874 -11.02549 -10.76559 -10.48802 -10.44302 -10.23716 -10.22244 -9.93681 -9.78187 -9.44066 -8.94934 -8.51814 -6.73480 -5.84895 -3.26431 0.35813 1.10862 1.78808 2.21117 2.83512 2.92781 2.96628 3.35437 3.40290 3.41577 3.42745 3.83679 4.12403 4.23509 4.45544 4.56262 4.66817 5.12884 5.22189 5.25810 5.32084 5.38107 5.50602 5.82629 5.91959 6.04375 6.11550 6.21601 6.27311 6.42818 6.47825 6.54960 6.67772 6.79000 6.90618 7.18834 7.22722 7.50304 7.54310 7.74870 7.98076 8.38964 9.15511 9.78696 10.34897 11.23749 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002796 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.030951 B =10011.055493 C =10956.401104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.182 3.818 3 N -0.687 5.687 4 C 0.604 3.396 5 O -0.506 6.506 6 C -0.058 4.058 7 C -0.119 4.119 8 C -0.091 4.091 9 C 0.562 3.438 10 F -0.162 7.162 11 F -0.163 7.163 12 F -0.161 7.161 13 N -0.289 5.289 14 O 0.158 5.842 15 C -0.145 4.145 16 C 0.148 3.852 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.169 3.831 27 C -0.146 4.146 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.409 0.591 32 H 0.198 0.802 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.255 0.745 38 H 0.092 0.908 39 H 0.017 0.983 40 H 0.076 0.924 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 13.324 4.830 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.098 3.902 3 N -0.337 5.337 4 C 0.385 3.615 5 O -0.383 6.383 6 C -0.123 4.123 7 C -0.142 4.142 8 C -0.248 4.248 9 C 0.506 3.494 10 F -0.143 7.143 11 F -0.144 7.144 12 F -0.142 7.142 13 N 0.020 4.980 14 O 0.072 5.928 15 C -0.184 4.184 16 C 0.022 3.978 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.043 3.957 27 C -0.186 4.186 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.245 0.755 32 H 0.215 0.785 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.792 13.756 4.489 18.051 hybrid contribution 0.469 -0.536 0.143 0.726 sum -10.323 13.221 4.632 17.401 Atomic orbital electron populations 1.22248 0.94805 1.02472 1.02513 1.20477 0.92967 0.78778 0.98023 1.46155 1.51376 1.12426 1.23751 1.16392 0.80815 0.80750 0.83527 1.90826 1.37842 1.73803 1.35804 1.24689 0.98768 0.97536 0.91353 1.22641 1.01040 0.88563 1.01958 1.23406 1.06278 0.97674 0.97483 1.16570 0.74450 0.82008 0.76348 1.93283 1.53831 1.96571 1.70653 1.93265 1.95437 1.63786 1.61938 1.93256 1.47939 1.94913 1.78073 1.73847 1.15226 0.95073 1.13805 1.85080 1.49980 1.16982 1.40772 1.22439 0.99204 1.00017 0.96774 1.20850 0.90703 0.96147 0.90095 1.44028 1.48318 1.39629 0.99317 1.19152 1.09967 1.02994 1.06215 0.91701 1.25016 0.97151 0.97435 0.99908 1.70001 1.37721 1.29029 1.17985 0.86374 0.79249 0.83820 0.77354 1.21027 1.21646 1.20921 1.20775 0.86715 0.97259 0.90933 1.22550 1.01592 1.00193 0.94245 0.92977 0.91662 0.90879 0.75467 0.78519 0.90819 0.91244 0.92839 0.96862 0.93550 0.89029 0.96501 0.90562 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.40 37.16 0.31 -1.78 16 2 C 0.18 2.71 0.66 -131.78 -0.09 2.62 16 3 N -0.69 -9.52 4.10 -48.60 -0.20 -9.72 16 4 C 0.60 8.20 7.24 -12.48 -0.09 8.11 16 5 O -0.51 -7.71 13.13 5.29 0.07 -7.64 16 6 C -0.06 -0.70 7.29 -36.31 -0.26 -0.96 16 7 C -0.12 -1.27 10.65 -38.94 -0.41 -1.68 16 8 C -0.09 -1.03 6.63 -82.16 -0.54 -1.58 16 9 C 0.56 5.79 3.56 36.00 0.13 5.91 16 10 F -0.16 -1.74 17.30 2.25 0.04 -1.70 16 11 F -0.16 -1.78 17.27 2.25 0.04 -1.74 16 12 F -0.16 -1.50 17.08 2.25 0.04 -1.46 16 13 N -0.29 -3.71 12.00 33.52 0.40 -3.31 16 14 O 0.16 1.96 11.04 15.55 0.17 2.14 16 15 C -0.14 -2.42 4.67 -26.61 -0.12 -2.54 16 16 C 0.15 2.99 6.26 -3.71 -0.02 2.96 16 17 N -0.59 -13.76 2.99 -172.32 -0.52 -14.28 16 18 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -24.95 11.19 55.49 0.62 -24.33 16 22 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.58 5.03 -3.71 -0.02 3.56 16 27 C -0.15 -2.38 4.96 -26.61 -0.13 -2.51 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.00 6.17 -51.92 -0.32 0.68 16 31 H 0.41 5.42 7.09 -40.82 -0.29 5.13 16 32 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.07 1.22 6.20 -51.93 -0.32 0.90 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.01 0.28 7.74 -51.93 -0.40 -0.12 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.09 2.23 6.03 -51.93 -0.31 1.92 16 39 H 0.02 0.37 6.94 -51.93 -0.36 0.01 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -28.35 349.90 -5.08 -33.43 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.50 Total: 2.03 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.49 Total: 5.31 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.31 Total: -51.63 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.24 Total: -5.50 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.12 Total: -4.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.35 -5.08 -33.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045469368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.347 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds