Wall clock time and date at job start Wed Apr 1 2020 04:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46671 * 2 1 4 4 C 1.34783 * 119.99318 * 60.02807 * 3 2 1 5 5 O 1.21582 * 120.00178 * 0.02562 * 4 3 2 6 6 C 1.47511 * 119.99486 * 180.02562 * 4 3 2 7 7 C 1.36826 * 126.94271 * 179.97438 * 6 4 3 8 8 C 1.41266 * 103.84893 * 179.97438 * 7 6 4 9 9 C 1.50697 * 126.70682 * 179.97438 * 8 7 6 10 10 F 1.39895 * 109.47209 * 89.99746 * 9 8 7 11 11 F 1.39897 * 109.47201 * 210.00084 * 9 8 7 12 12 F 1.39901 * 109.46881 * 329.99928 * 9 8 7 13 13 N 1.30131 * 106.58891 * 0.02562 * 8 7 6 14 14 O 1.20896 * 111.98052 * 359.97438 * 13 8 7 15 15 C 1.53047 * 109.45067 * 119.96962 * 2 1 3 16 16 C 1.53189 * 109.31417 * 181.37281 * 15 2 1 17 17 N 1.46924 * 108.77909 * 305.36842 * 16 15 2 18 18 C 1.36936 * 120.62885 * 233.63250 * 17 16 15 19 19 H 1.07999 * 120.00311 * 27.66107 * 18 17 16 20 20 C 1.38821 * 119.99720 * 207.66228 * 18 17 16 21 21 N 1.31619 * 119.99930 * 17.35864 * 20 18 17 22 22 Si 1.86799 * 119.99838 * 197.36012 * 20 18 17 23 23 H 1.48498 * 109.47367 * 60.00101 * 22 20 18 24 24 H 1.48503 * 109.46855 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47025 * 299.99984 * 22 20 18 26 26 C 1.46927 * 118.73970 * 53.60297 * 17 16 15 27 27 C 1.53042 * 109.45747 * 240.02760 * 2 1 3 28 28 H 1.08996 * 109.47147 * 59.99275 * 1 2 3 29 29 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47015 * 299.99926 * 1 2 3 31 31 H 0.96994 * 120.00499 * 240.03313 * 3 2 1 32 32 H 1.08002 * 128.07324 * 0.02562 * 7 6 4 33 33 H 1.09000 * 109.49589 * 301.32748 * 15 2 1 34 34 H 1.09001 * 109.49079 * 61.42455 * 15 2 1 35 35 H 1.08998 * 109.58994 * 185.57883 * 16 15 2 36 36 H 1.09002 * 109.58319 * 65.15228 * 16 15 2 37 37 H 0.96999 * 120.00062 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.58904 * 186.60456 * 26 17 16 39 39 H 1.09003 * 109.70234 * 66.24968 * 26 17 16 40 40 H 1.08993 * 109.50066 * 298.58364 * 27 2 1 41 41 H 1.09003 * 109.49703 * 58.65053 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2108 1.0112 5 8 0.9947 1.8127 1.9235 6 6 2.1840 3.6018 1.0110 7 6 1.9425 4.5593 1.9580 8 6 2.6367 5.6922 1.4782 9 6 2.7129 7.0467 2.1344 10 9 3.8132 7.0855 2.9975 11 9 2.8552 8.0331 1.1527 12 9 1.5409 7.2788 2.8623 13 7 3.1967 5.3380 0.3582 14 8 2.9606 4.1856 0.0789 15 6 2.0396 -0.7209 1.2502 16 6 3.5711 -0.6891 1.2644 17 7 4.0676 -1.2494 0.0002 18 6 4.9752 -2.2748 0.0003 19 1 5.0077 -2.9671 0.8286 20 6 5.8534 -2.4244 -1.0643 21 7 6.0600 -1.4227 -1.8927 22 14 6.7420 -4.0474 -1.3211 23 1 5.7462 -5.1304 -1.5226 24 1 7.6162 -3.9491 -2.5175 25 1 7.5703 -4.3525 -0.1270 26 6 3.5713 -0.6891 -1.2641 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.5754 1.6987 -0.7277 32 1 1.3582 4.4697 2.8619 33 1 1.6570 -0.2208 2.1399 34 1 1.6973 -1.7557 1.2382 35 1 3.9412 -1.2852 2.0986 36 1 3.9142 0.3403 1.3675 37 1 6.6740 -1.5271 -2.6364 38 1 3.9416 -1.2851 -2.0983 39 1 3.9144 0.3401 -1.3697 40 1 1.6975 -1.7556 -1.2383 41 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045469368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:05 Heat of formation + Delta-G solvation = -109.084747 kcal Electronic energy + Delta-G solvation = -31401.524471 eV Core-core repulsion = 26484.424492 eV Total energy + Delta-G solvation = -4917.099979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.45311 -48.96288 -48.95325 -46.63023 -41.56457 -39.00963 -36.30489 -35.87675 -34.13756 -33.34567 -32.16833 -31.55961 -29.05335 -28.53168 -26.04237 -25.61478 -24.43993 -23.93598 -22.78271 -22.13696 -20.51976 -20.14546 -19.99175 -19.63073 -19.09591 -18.74489 -18.36156 -17.35973 -16.82133 -16.55963 -16.17049 -15.80176 -15.77673 -15.70472 -15.44751 -15.34877 -15.19224 -15.09052 -15.06958 -14.94540 -14.82558 -14.58555 -14.05617 -13.83354 -13.42336 -13.21620 -13.09209 -13.03608 -12.83935 -12.59139 -12.49853 -12.28115 -12.20545 -11.97851 -11.75546 -11.59883 -11.32242 -11.17968 -10.86154 -10.50152 -10.12218 -8.63446 -7.85285 -5.28678 -0.60135 0.21409 0.91793 1.25214 1.49265 1.50774 1.57345 1.78709 1.96169 2.09251 2.48545 2.53735 3.00736 3.23136 3.29754 3.34547 3.58119 3.70765 3.74307 3.90574 4.04264 4.13524 4.43005 4.51329 4.66380 4.74504 4.77833 4.93435 4.96459 5.00974 5.14020 5.21303 5.33711 5.39795 5.48768 5.57705 5.67046 5.80199 6.20968 6.41986 6.49151 6.88855 7.19004 7.89838 8.40227 9.20153 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002796 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.030951 B =10011.055493 C =10956.401104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.186 3.814 3 N -0.689 5.689 4 C 0.609 3.391 5 O -0.522 6.522 6 C -0.068 4.068 7 C -0.102 4.102 8 C -0.092 4.092 9 C 0.568 3.432 10 F -0.164 7.164 11 F -0.167 7.167 12 F -0.152 7.152 13 N -0.307 5.307 14 O 0.154 5.846 15 C -0.133 4.133 16 C 0.149 3.851 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.044 4.044 21 N -0.929 5.929 22 Si 0.961 3.039 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.281 1.281 26 C 0.174 3.826 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.411 0.589 32 H 0.222 0.778 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.007 0.993 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.074 0.926 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 13.641 5.340 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.101 3.899 3 N -0.339 5.339 4 C 0.392 3.608 5 O -0.399 6.399 6 C -0.133 4.133 7 C -0.124 4.124 8 C -0.249 4.249 9 C 0.513 3.487 10 F -0.145 7.145 11 F -0.148 7.148 12 F -0.133 7.133 13 N 0.002 4.998 14 O 0.068 5.932 15 C -0.172 4.172 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.395 4.395 19 H 0.079 0.921 20 C -0.240 4.240 21 N -0.575 5.575 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.049 3.951 27 C -0.171 4.171 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.238 0.762 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.092 0.908 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.362 14.081 5.012 19.396 hybrid contribution 0.975 -0.574 0.046 1.132 sum -11.388 13.507 5.058 18.377 Atomic orbital electron populations 1.22150 0.92492 1.03339 1.03070 1.20384 0.94515 0.78924 0.96082 1.46119 1.51558 1.12122 1.24121 1.16399 0.80325 0.81083 0.82986 1.90817 1.38536 1.74333 1.36206 1.24468 0.99626 0.97200 0.92055 1.22952 0.99981 0.87524 1.01990 1.23613 1.05880 0.98304 0.97104 1.16422 0.74628 0.81464 0.76205 1.93283 1.54039 1.96538 1.70657 1.93260 1.95481 1.63864 1.62178 1.93277 1.47391 1.94809 1.77798 1.73838 1.15926 0.95283 1.14705 1.85070 1.50215 1.16937 1.40996 1.22286 0.96260 1.00505 0.98175 1.20900 0.93069 0.95198 0.88524 1.44266 1.48253 1.39492 1.00975 1.19427 1.10307 1.03683 1.06046 0.92126 1.25662 0.98248 1.00068 1.00009 1.70139 1.38485 1.30496 1.18351 0.85439 0.78134 0.80580 0.76848 1.20413 1.22074 1.20691 1.20633 0.89903 0.95672 0.88918 1.22343 0.97607 1.00820 0.96318 0.91372 0.90674 0.91352 0.75197 0.76169 0.90248 0.91231 0.93833 0.97515 0.94115 0.92523 0.97432 0.90771 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.40 71.98 0.60 -2.88 16 2 C 0.19 5.18 0.66 3.63 0.00 5.18 16 3 N -0.69 -18.12 4.10 -425.95 -1.74 -19.86 16 4 C 0.61 15.57 7.24 86.69 0.63 16.20 16 5 O -0.52 -14.82 13.13 -3.97 -0.05 -14.87 16 6 C -0.07 -1.54 7.29 24.39 0.18 -1.36 16 7 C -0.10 -1.96 10.65 22.68 0.24 -1.72 16 8 C -0.09 -1.94 6.63 43.55 0.29 -1.65 16 9 C 0.57 10.79 3.56 71.23 0.25 11.04 16 10 F -0.16 -3.27 17.30 44.97 0.78 -2.50 16 11 F -0.17 -3.43 17.27 44.97 0.78 -2.65 16 12 F -0.15 -2.51 17.08 44.97 0.77 -1.74 16 13 N -0.31 -7.57 12.00 -48.85 -0.59 -8.15 16 14 O 0.15 3.69 11.04 65.83 0.73 4.42 16 15 C -0.13 -4.27 4.67 30.67 0.14 -4.13 16 16 C 0.15 5.98 6.26 86.36 0.54 6.52 16 17 N -0.61 -28.54 2.99 -699.09 -2.09 -30.63 16 18 C -0.26 -14.06 9.59 84.04 0.81 -13.25 16 19 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 20 C -0.04 -2.37 4.91 84.86 0.42 -1.95 16 21 N -0.93 -52.39 11.19 21.65 0.24 -52.15 16 22 Si 0.96 43.67 29.59 68.60 2.03 45.70 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.17 7.42 5.03 86.36 0.43 7.86 16 27 C -0.13 -4.09 4.96 30.67 0.15 -3.94 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.68 6.17 -2.38 -0.01 1.66 16 31 H 0.41 10.53 7.09 -92.71 -0.66 9.87 16 32 H 0.22 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.08 2.50 6.20 -2.39 -0.01 2.48 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 36 H 0.01 0.29 7.74 -2.39 -0.02 0.27 16 37 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.06 2.82 6.03 -2.39 -0.01 2.80 16 39 H 0.01 0.34 6.94 -2.39 -0.02 0.32 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -60.60 349.90 5.98 -54.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.45 Total: 11.89 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 4.69 Total: 15.92 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -4.18 Total: -110.79 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.67 Total: -10.45 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.32 Total: -6.88 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.60 5.98 -54.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045469368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.465 kcal (2) G-P(sol) polarization free energy of solvation -60.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds