Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.45783 * 2 1 4 4 C 1.34785 * 119.99845 * 59.72388 * 3 2 1 5 5 O 1.21612 * 119.99974 * 0.27890 * 4 3 2 6 6 C 1.47397 * 119.99740 * 180.27246 * 4 3 2 7 7 C 1.37354 * 128.56599 * 0.02760 * 6 4 3 8 8 O 1.33499 * 106.34127 * 179.97438 * 7 6 4 9 9 N 1.20653 * 113.15683 * 359.97438 * 8 7 6 10 10 C 1.30023 * 112.30217 * 359.71754 * 9 8 7 11 11 C 1.50693 * 127.33619 * 180.29711 * 10 9 8 12 12 F 1.39901 * 109.47431 * 270.14870 * 11 10 9 13 13 F 1.39899 * 109.47315 * 30.14734 * 11 10 9 14 14 F 1.39905 * 109.46833 * 150.14750 * 11 10 9 15 15 C 1.53045 * 109.45959 * 119.97081 * 2 1 3 16 16 C 1.53163 * 109.32582 * 181.38447 * 15 2 1 17 17 N 1.46920 * 108.76930 * 305.36054 * 16 15 2 18 18 C 1.36943 * 120.63054 * 233.62893 * 17 16 15 19 19 H 1.07994 * 120.00188 * 152.59941 * 18 17 16 20 20 C 1.38815 * 119.99591 * 332.60427 * 18 17 16 21 21 N 1.31623 * 119.99964 * 159.35959 * 20 18 17 22 22 Si 1.86802 * 120.00356 * 339.35728 * 20 18 17 23 23 H 1.48503 * 109.46919 * 92.90062 * 22 20 18 24 24 H 1.48503 * 109.47405 * 212.90466 * 22 20 18 25 25 H 1.48502 * 109.47195 * 332.90524 * 22 20 18 26 26 C 1.46926 * 118.74224 * 53.60954 * 17 16 15 27 27 C 1.53038 * 109.46053 * 240.02908 * 2 1 3 28 28 H 1.09001 * 109.47311 * 60.00103 * 1 2 3 29 29 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47551 * 299.99634 * 1 2 3 31 31 H 0.96996 * 119.99900 * 239.99428 * 3 2 1 32 32 H 1.07999 * 126.82984 * 359.97438 * 7 6 4 33 33 H 1.08998 * 109.50170 * 301.33049 * 15 2 1 34 34 H 1.09004 * 109.49334 * 61.42569 * 15 2 1 35 35 H 1.09003 * 109.58828 * 185.56837 * 16 15 2 36 36 H 1.09006 * 109.70765 * 65.21572 * 16 15 2 37 37 H 0.96999 * 119.99780 * 179.97438 * 21 20 18 38 38 H 1.08994 * 109.58707 * 186.60265 * 26 17 16 39 39 H 1.08997 * 109.70175 * 66.24952 * 26 17 16 40 40 H 1.09000 * 109.49815 * 298.57618 * 27 2 1 41 41 H 1.08999 * 109.49919 * 58.64625 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6876 2.2128 1.0081 5 8 0.9886 1.8148 1.9202 6 6 2.1736 3.6043 1.0050 7 6 2.9640 4.2332 0.0742 8 8 3.1322 5.4844 0.5081 9 7 2.5674 5.7048 1.5512 10 6 1.9258 4.6644 1.9944 11 6 1.1060 4.5646 3.2548 12 9 1.9259 4.1599 4.3137 13 9 0.5479 5.8135 3.5482 14 9 0.0829 3.6278 3.0728 15 6 2.0398 -0.7209 1.2501 16 6 3.5711 -0.6889 1.2645 17 7 4.0676 -1.2492 0.0004 18 6 4.9753 -2.2746 0.0005 19 1 5.0112 -2.9641 -0.8299 20 6 5.8493 -2.4276 1.0680 21 7 6.4252 -3.5910 1.2855 22 14 6.2081 -0.9825 2.1961 23 1 5.2786 -1.0157 3.3538 24 1 7.6084 -1.0701 2.6827 25 1 6.0223 0.2871 1.4485 26 6 3.5714 -0.6889 -1.2640 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5756 1.6987 -0.7274 32 1 3.3689 3.8013 -0.8291 33 1 1.6573 -0.2209 2.1399 34 1 1.6976 -1.7557 1.2382 35 1 3.9412 -1.2848 2.0988 36 1 3.9163 0.3398 1.3689 37 1 7.0362 -3.6978 2.0313 38 1 3.9417 -1.2849 -2.0980 39 1 3.9145 0.3402 -1.3696 40 1 1.6977 -1.7557 -1.2382 41 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045500685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = -85.172619 kcal Electronic energy + Delta-G solvation = -32657.541800 eV Core-core repulsion = 27741.478728 eV Total energy + Delta-G solvation = -4916.063071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.32857 -47.90704 -47.74654 -45.70441 -40.43431 -37.78147 -34.83616 -34.65249 -33.20455 -31.89830 -30.99722 -30.55443 -27.81351 -27.57240 -25.31044 -23.99280 -22.92760 -22.36157 -21.81267 -20.81549 -19.52714 -18.96831 -18.93477 -18.49588 -18.16144 -18.08098 -16.95430 -16.40092 -15.49996 -15.37593 -15.03651 -14.75980 -14.68311 -14.51676 -14.24845 -14.17391 -13.99386 -13.91340 -13.79723 -13.73408 -13.60334 -13.29338 -12.71757 -12.45812 -12.41673 -12.16507 -12.08778 -11.83835 -11.48688 -11.40080 -11.18435 -10.91164 -10.66852 -10.39859 -10.32481 -10.15350 -9.85612 -9.64227 -9.46992 -9.04360 -8.63854 -7.04392 -6.00509 -3.36919 0.53521 0.79127 1.94760 2.31442 2.92918 2.99253 3.04030 3.30678 3.36879 3.43524 3.45736 4.05786 4.08408 4.21271 4.36770 4.48057 4.66284 4.86274 4.88269 5.04227 5.13778 5.19613 5.37891 5.66374 5.75279 5.87165 5.89956 5.98629 6.04792 6.21368 6.40645 6.42213 6.43658 6.54264 6.59829 6.71022 6.87036 7.31186 7.43913 7.90044 8.06516 8.26959 8.87722 9.66444 10.03161 11.15336 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.004055 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.876023 B = 6902.982094 C = 7456.908551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.186 3.814 3 N -0.702 5.702 4 C 0.586 3.414 5 O -0.505 6.505 6 C -0.203 4.203 7 C 0.003 3.997 8 O 0.132 5.868 9 N -0.297 5.297 10 C -0.039 4.039 11 C 0.558 3.442 12 F -0.162 7.162 13 F -0.169 7.169 14 F -0.137 7.137 15 C -0.145 4.145 16 C 0.131 3.869 17 N -0.604 5.604 18 C -0.263 4.263 19 H 0.086 0.914 20 C 0.027 3.973 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.274 1.274 26 C 0.149 3.851 27 C -0.139 4.139 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.397 0.603 32 H 0.240 0.760 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.021 0.979 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.016 0.984 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 16.873 -4.915 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.101 3.899 3 N -0.353 5.353 4 C 0.370 3.630 5 O -0.381 6.381 6 C -0.212 4.212 7 C -0.078 4.078 8 O 0.059 5.941 9 N 0.006 4.994 10 C -0.202 4.202 11 C 0.502 3.498 12 F -0.144 7.144 13 F -0.151 7.151 14 F -0.118 7.118 15 C -0.185 4.185 16 C 0.005 3.995 17 N -0.328 5.328 18 C -0.391 4.391 19 H 0.104 0.896 20 C -0.172 4.172 21 N -0.549 5.549 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.199 1.199 26 C 0.022 3.978 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.232 0.768 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.101 0.899 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.410 17.683 -3.652 21.359 hybrid contribution 0.430 0.141 0.393 0.599 sum -10.980 17.823 -3.259 21.186 Atomic orbital electron populations 1.22230 0.94503 1.02514 1.02708 1.20372 0.93287 0.78921 0.97305 1.45963 1.52755 1.12375 1.24216 1.16687 0.80792 0.82313 0.83180 1.90841 1.36757 1.75640 1.34874 1.22399 1.05559 0.97273 0.95921 1.26603 0.97007 0.83662 1.00512 1.84620 1.53209 1.28820 1.27406 1.73723 1.06885 1.21671 0.97103 1.24678 1.04468 0.91639 0.99465 1.16547 0.77976 0.74593 0.80646 1.93276 1.72449 1.90474 1.58169 1.93241 1.85930 1.41967 1.93942 1.93385 1.59030 1.64429 1.94962 1.22431 0.98437 1.00482 0.97159 1.21250 0.91648 0.96518 0.90034 1.44347 1.48885 1.40283 0.99245 1.18901 1.09842 1.02801 1.07570 0.89647 1.25253 0.97362 0.96526 0.98101 1.69832 1.32501 1.21943 1.30617 0.86982 0.76303 0.84652 0.80810 1.21612 1.23147 1.19883 1.20881 0.90618 0.96210 0.90043 1.22355 0.99288 1.01178 0.94984 0.93091 0.91667 0.90529 0.76824 0.74351 0.90476 0.90748 0.91087 0.96156 0.92708 0.91461 0.96629 0.89868 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.40 37.16 0.31 -1.72 16 2 C 0.19 2.58 0.66 -131.78 -0.09 2.49 16 3 N -0.70 -8.56 4.10 -48.64 -0.20 -8.76 16 4 C 0.59 8.03 7.22 -12.53 -0.09 7.93 16 5 O -0.51 -8.40 10.30 5.27 0.05 -8.35 16 6 C -0.20 -2.34 6.41 -102.89 -0.66 -3.00 16 7 C 0.00 0.02 11.85 30.41 0.36 0.38 16 8 O 0.13 1.19 11.06 18.64 0.21 1.39 16 9 N -0.30 -3.49 11.98 34.78 0.42 -3.08 16 10 C -0.04 -0.50 6.86 -79.77 -0.55 -1.05 16 11 C 0.56 7.60 3.49 36.00 0.13 7.73 16 12 F -0.16 -2.37 17.30 2.25 0.04 -2.33 16 13 F -0.17 -2.17 17.28 2.25 0.04 -2.13 16 14 F -0.14 -2.02 14.28 2.25 0.03 -1.98 16 15 C -0.15 -2.58 4.67 -26.62 -0.12 -2.70 16 16 C 0.13 2.78 3.95 -3.73 -0.01 2.76 16 17 N -0.60 -13.21 2.77 -172.34 -0.48 -13.69 16 18 C -0.26 -7.01 10.04 -15.06 -0.15 -7.16 16 19 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 20 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 21 N -0.91 -27.33 13.97 55.49 0.78 -26.55 16 22 Si 0.88 22.31 24.34 -169.99 -4.14 18.17 16 23 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 24 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 25 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 26 C 0.15 2.46 6.24 -3.71 -0.02 2.43 16 27 C -0.14 -1.84 4.96 -26.61 -0.13 -1.98 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.10 6.15 -51.93 -0.32 0.78 16 31 H 0.40 3.68 6.45 -40.82 -0.26 3.41 16 32 H 0.24 0.57 7.68 -52.49 -0.40 0.17 16 33 H 0.08 1.42 6.21 -51.93 -0.32 1.10 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.73 4.50 -51.93 -0.23 1.49 16 36 H 0.02 0.44 6.67 -51.93 -0.35 0.09 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 39 H 0.02 0.23 6.94 -51.93 -0.36 -0.13 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -33.11 337.33 -3.68 -36.79 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.39 Total: -1.35 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.12 Total: 6.80 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.52 Total: -52.09 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.26 Total: -6.96 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.11 -3.68 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045500685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.381 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds