Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.45783 * 2 1 4 4 C 1.34785 * 119.99845 * 59.72388 * 3 2 1 5 5 O 1.21612 * 119.99974 * 0.27890 * 4 3 2 6 6 C 1.47397 * 119.99740 * 180.27246 * 4 3 2 7 7 C 1.37354 * 128.56599 * 0.02760 * 6 4 3 8 8 O 1.33499 * 106.34127 * 179.97438 * 7 6 4 9 9 N 1.20653 * 113.15683 * 359.97438 * 8 7 6 10 10 C 1.30023 * 112.30217 * 359.71754 * 9 8 7 11 11 C 1.50693 * 127.33619 * 180.29711 * 10 9 8 12 12 F 1.39901 * 109.47431 * 270.14870 * 11 10 9 13 13 F 1.39899 * 109.47315 * 30.14734 * 11 10 9 14 14 F 1.39905 * 109.46833 * 150.14750 * 11 10 9 15 15 C 1.53045 * 109.45959 * 119.97081 * 2 1 3 16 16 C 1.53163 * 109.32582 * 181.38447 * 15 2 1 17 17 N 1.46920 * 108.76930 * 305.36054 * 16 15 2 18 18 C 1.36943 * 120.63054 * 233.62893 * 17 16 15 19 19 H 1.07994 * 120.00188 * 152.59941 * 18 17 16 20 20 C 1.38815 * 119.99591 * 332.60427 * 18 17 16 21 21 N 1.31623 * 119.99964 * 159.35959 * 20 18 17 22 22 Si 1.86802 * 120.00356 * 339.35728 * 20 18 17 23 23 H 1.48503 * 109.46919 * 92.90062 * 22 20 18 24 24 H 1.48503 * 109.47405 * 212.90466 * 22 20 18 25 25 H 1.48502 * 109.47195 * 332.90524 * 22 20 18 26 26 C 1.46926 * 118.74224 * 53.60954 * 17 16 15 27 27 C 1.53038 * 109.46053 * 240.02908 * 2 1 3 28 28 H 1.09001 * 109.47311 * 60.00103 * 1 2 3 29 29 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47551 * 299.99634 * 1 2 3 31 31 H 0.96996 * 119.99900 * 239.99428 * 3 2 1 32 32 H 1.07999 * 126.82984 * 359.97438 * 7 6 4 33 33 H 1.08998 * 109.50170 * 301.33049 * 15 2 1 34 34 H 1.09004 * 109.49334 * 61.42569 * 15 2 1 35 35 H 1.09003 * 109.58828 * 185.56837 * 16 15 2 36 36 H 1.09006 * 109.70765 * 65.21572 * 16 15 2 37 37 H 0.96999 * 119.99780 * 179.97438 * 21 20 18 38 38 H 1.08994 * 109.58707 * 186.60265 * 26 17 16 39 39 H 1.08997 * 109.70175 * 66.24952 * 26 17 16 40 40 H 1.09000 * 109.49815 * 298.57618 * 27 2 1 41 41 H 1.08999 * 109.49919 * 58.64625 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6876 2.2128 1.0081 5 8 0.9886 1.8148 1.9202 6 6 2.1736 3.6043 1.0050 7 6 2.9640 4.2332 0.0742 8 8 3.1322 5.4844 0.5081 9 7 2.5674 5.7048 1.5512 10 6 1.9258 4.6644 1.9944 11 6 1.1060 4.5646 3.2548 12 9 1.9259 4.1599 4.3137 13 9 0.5479 5.8135 3.5482 14 9 0.0829 3.6278 3.0728 15 6 2.0398 -0.7209 1.2501 16 6 3.5711 -0.6889 1.2645 17 7 4.0676 -1.2492 0.0004 18 6 4.9753 -2.2746 0.0005 19 1 5.0112 -2.9641 -0.8299 20 6 5.8493 -2.4276 1.0680 21 7 6.4252 -3.5910 1.2855 22 14 6.2081 -0.9825 2.1961 23 1 5.2786 -1.0157 3.3538 24 1 7.6084 -1.0701 2.6827 25 1 6.0223 0.2871 1.4485 26 6 3.5714 -0.6889 -1.2640 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5756 1.6987 -0.7274 32 1 3.3689 3.8013 -0.8291 33 1 1.6573 -0.2209 2.1399 34 1 1.6976 -1.7557 1.2382 35 1 3.9412 -1.2848 2.0988 36 1 3.9163 0.3398 1.3689 37 1 7.0362 -3.6978 2.0313 38 1 3.9417 -1.2849 -2.0980 39 1 3.9145 0.3402 -1.3696 40 1 1.6977 -1.7557 -1.2382 41 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045500685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = -108.649321 kcal Electronic energy + Delta-G solvation = -32658.559826 eV Core-core repulsion = 27741.478728 eV Total energy + Delta-G solvation = -4917.081097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.38347 -48.96141 -48.82600 -46.52240 -41.55055 -39.06911 -36.27572 -35.55718 -34.25052 -33.55077 -32.18800 -31.97934 -29.27323 -28.53638 -26.22570 -25.64421 -24.40430 -23.23818 -23.04874 -22.05295 -20.49446 -20.11865 -19.93702 -19.50877 -19.11063 -19.02092 -18.72201 -17.36469 -17.17568 -16.60518 -16.17796 -15.85747 -15.80236 -15.73189 -15.58248 -15.30596 -15.21985 -15.11587 -15.03235 -14.99347 -14.73834 -14.54053 -14.24113 -13.72694 -13.65570 -13.55878 -13.26721 -13.07901 -12.84032 -12.69329 -12.55413 -12.16376 -12.03442 -11.99305 -11.63217 -11.55340 -11.33220 -11.09742 -10.77738 -10.73908 -10.08034 -8.89143 -8.16804 -5.46025 -0.19237 -0.03624 1.02847 1.28827 1.35174 1.43581 1.59392 1.99603 2.05901 2.12624 2.40195 2.46334 3.03141 3.05339 3.19581 3.36021 3.40410 3.55129 3.73648 3.91382 4.00020 4.07715 4.35437 4.38245 4.45262 4.67618 4.67964 4.83760 4.87344 4.95211 5.02231 5.14861 5.17252 5.23018 5.38767 5.43405 5.62504 5.89394 6.15117 6.48562 6.62901 6.94210 7.13426 7.65225 8.05823 9.03172 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.004055 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.876023 B = 6902.982094 C = 7456.908551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.192 3.808 3 N -0.692 5.692 4 C 0.586 3.414 5 O -0.543 6.543 6 C -0.236 4.236 7 C 0.051 3.949 8 O 0.149 5.851 9 N -0.311 5.311 10 C -0.062 4.062 11 C 0.554 3.446 12 F -0.174 7.174 13 F -0.168 7.168 14 F -0.147 7.147 15 C -0.139 4.139 16 C 0.134 3.866 17 N -0.616 5.616 18 C -0.238 4.238 19 H 0.061 0.939 20 C -0.032 4.032 21 N -0.957 5.957 22 Si 0.936 3.064 23 H -0.296 1.296 24 H -0.314 1.314 25 H -0.252 1.252 26 C 0.139 3.861 27 C -0.125 4.125 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.297 0.703 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 19.431 -7.834 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.107 3.893 3 N -0.345 5.345 4 C 0.371 3.629 5 O -0.422 6.422 6 C -0.244 4.244 7 C -0.029 4.029 8 O 0.075 5.925 9 N -0.005 5.005 10 C -0.224 4.224 11 C 0.499 3.501 12 F -0.155 7.155 13 F -0.150 7.150 14 F -0.128 7.128 15 C -0.179 4.179 16 C 0.008 3.992 17 N -0.340 5.340 18 C -0.368 4.368 19 H 0.079 0.921 20 C -0.226 4.226 21 N -0.604 5.604 22 Si 0.767 3.233 23 H -0.225 1.225 24 H -0.243 1.243 25 H -0.176 1.176 26 C 0.015 3.985 27 C -0.165 4.165 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.253 0.747 32 H 0.312 0.688 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.036 20.312 -6.608 24.518 hybrid contribution 0.559 -0.653 1.206 1.481 sum -11.477 19.659 -5.402 23.396 Atomic orbital electron populations 1.22127 0.93154 1.02819 1.03005 1.20204 0.94205 0.79510 0.95392 1.45769 1.52826 1.11331 1.24536 1.16933 0.80134 0.83100 0.82721 1.90835 1.38459 1.76537 1.36324 1.22204 1.08328 0.96399 0.97489 1.27551 0.93404 0.81911 1.00042 1.84617 1.52042 1.29553 1.26314 1.73741 1.07121 1.21635 0.98031 1.24596 1.05442 0.92801 0.99582 1.16706 0.77936 0.74354 0.81139 1.93244 1.72707 1.90626 1.58932 1.93234 1.85966 1.41745 1.94032 1.93359 1.59528 1.64870 1.95029 1.22307 0.95831 1.00434 0.99319 1.21140 0.93779 0.95682 0.88568 1.44469 1.48188 1.39818 1.01552 1.18923 1.09167 1.02961 1.05743 0.92140 1.25793 0.98432 0.98222 1.00200 1.69955 1.34552 1.23864 1.32001 0.86091 0.75004 0.82987 0.79253 1.22473 1.24324 1.17590 1.21218 0.92619 0.97607 0.87055 1.22244 0.96643 1.01159 0.96405 0.90461 0.91427 0.92519 0.74697 0.68837 0.91563 0.91997 0.94931 0.95559 0.93220 0.91707 0.93012 0.91050 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.40 71.98 0.60 -2.77 16 2 C 0.19 4.70 0.66 3.63 0.00 4.71 16 3 N -0.69 -13.87 4.10 -426.03 -1.75 -15.61 16 4 C 0.59 14.43 7.22 86.65 0.63 15.06 16 5 O -0.54 -17.62 10.30 -4.07 -0.04 -17.66 16 6 C -0.24 -4.66 6.41 -18.75 -0.12 -4.78 16 7 C 0.05 0.48 11.85 67.61 0.80 1.28 16 8 O 0.15 2.05 11.06 76.94 0.85 2.90 16 9 N -0.31 -6.54 11.98 -44.77 -0.54 -7.08 16 10 C -0.06 -1.49 6.86 45.15 0.31 -1.18 16 11 C 0.55 15.08 3.49 71.23 0.25 15.33 16 12 F -0.17 -5.16 17.30 44.97 0.78 -4.38 16 13 F -0.17 -4.32 17.28 44.97 0.78 -3.54 16 14 F -0.15 -4.38 14.28 44.97 0.64 -3.74 16 15 C -0.14 -4.79 4.67 30.66 0.14 -4.65 16 16 C 0.13 5.51 3.95 86.35 0.34 5.85 16 17 N -0.62 -25.84 2.77 -699.16 -1.94 -27.78 16 18 C -0.24 -12.70 10.04 84.03 0.84 -11.85 16 19 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 20 C -0.03 -1.82 5.23 84.86 0.44 -1.38 16 21 N -0.96 -59.62 13.97 21.65 0.30 -59.32 16 22 Si 0.94 46.72 24.34 68.60 1.67 48.39 16 23 H -0.30 -14.99 6.62 99.48 0.66 -14.34 16 24 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 25 H -0.25 -11.47 6.64 99.48 0.66 -10.81 16 26 C 0.14 4.02 6.24 86.36 0.54 4.56 16 27 C -0.13 -2.77 4.96 30.67 0.15 -2.61 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.53 6.15 -2.39 -0.01 1.51 16 31 H 0.41 5.01 6.45 -92.71 -0.60 4.41 16 32 H 0.30 -1.01 7.68 -2.91 -0.02 -1.04 16 33 H 0.07 2.45 6.21 -2.39 -0.01 2.43 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.03 1.59 4.50 -2.39 -0.01 1.58 16 36 H 0.03 1.06 6.67 -2.38 -0.02 1.05 16 37 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.06 1.93 7.93 -2.39 -0.02 1.91 16 39 H 0.05 1.18 6.94 -2.39 -0.02 1.16 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -77.41 337.33 6.12 -71.29 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 0.42 Total: -1.03 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 4.93 Total: 17.56 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.92 Total: -109.79 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.81 Total: -14.76 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 2.20 Total: -11.65 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Total: -77.41 6.12 -71.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045500685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.355 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds