Wall clock time and date at job start Wed Apr 1 2020 04:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47077 * 269.99900 * 3 2 1 5 5 H 1.48500 * 109.47106 * 30.00248 * 3 2 1 6 6 H 1.48498 * 109.46821 * 150.00261 * 3 2 1 7 7 C 1.38811 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00284 * 195.66432 * 7 2 1 9 9 N 1.36936 * 119.99742 * 15.67411 * 7 2 1 10 10 C 1.47603 * 118.64802 * 26.45389 * 9 7 2 11 11 C 1.53951 * 112.14321 * 137.88852 * 10 9 7 12 12 C 1.50882 * 110.09766 * 319.44192 * 11 10 9 13 13 C 1.52573 * 109.35836 * 91.88272 * 12 11 10 14 14 H 1.09000 * 108.39009 * 36.14974 * 13 12 11 15 15 N 1.46501 * 108.51191 * 153.73542 * 13 12 11 16 16 C 1.34769 * 119.99925 * 209.76360 * 15 13 12 17 17 O 1.21582 * 120.00204 * 0.02562 * 16 15 13 18 18 C 1.47517 * 120.00024 * 180.02562 * 16 15 13 19 19 C 1.36825 * 126.94274 * 180.02562 * 18 16 15 20 20 C 1.41262 * 103.84272 * 179.73611 * 19 18 16 21 21 C 1.50704 * 126.70100 * 180.23755 * 20 19 18 22 22 F 1.39905 * 109.46858 * 90.00111 * 21 20 19 23 23 F 1.39898 * 109.46802 * 209.99668 * 21 20 19 24 24 F 1.39898 * 109.47183 * 330.00083 * 21 20 19 25 25 N 1.30126 * 106.59068 * 0.26007 * 20 19 18 26 26 O 1.20878 * 111.98279 * 0.02562 * 25 20 19 27 27 C 1.47102 * 114.32116 * 274.98684 * 13 12 11 28 28 C 1.44584 * 118.64160 * 206.47996 * 9 7 2 29 29 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08991 * 108.95200 * 258.57910 * 10 9 7 31 31 H 1.09001 * 108.94484 * 17.29682 * 10 9 7 32 32 H 1.09009 * 109.36180 * 79.63080 * 11 10 9 33 33 H 1.08996 * 109.37069 * 199.37525 * 11 10 9 34 34 H 1.08998 * 109.49010 * 331.91897 * 12 11 10 35 35 H 1.08997 * 109.49184 * 211.84520 * 12 11 10 36 36 H 0.97002 * 119.99538 * 29.76820 * 15 13 12 37 37 H 1.07997 * 128.07771 * 359.97438 * 19 18 16 38 38 H 1.09005 * 109.32028 * 183.06328 * 27 13 12 39 39 H 1.08994 * 109.32782 * 302.71418 * 27 13 12 40 40 H 1.08999 * 109.44853 * 150.66492 * 28 9 7 41 41 H 1.09000 * 109.42497 * 30.72570 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3661 -0.3193 10 6 0.1790 -2.2993 -1.1972 11 6 0.1703 -3.4255 -2.2468 12 6 1.5612 -3.6367 -2.7921 13 6 2.2699 -4.7080 -1.9687 14 1 1.5368 -5.4618 -1.6813 15 7 3.2853 -5.3457 -2.8104 16 6 3.6234 -6.6332 -2.5998 17 8 3.0855 -7.2656 -1.7116 18 6 4.6463 -7.2752 -3.4470 19 6 5.0952 -8.5648 -3.3596 20 6 6.0531 -8.6599 -4.3935 21 6 6.8667 -9.8748 -4.7585 22 9 6.1746 -10.6305 -5.7110 23 9 8.0967 -9.4704 -5.2882 24 9 7.0838 -10.6514 -3.6152 25 7 6.0961 -7.4935 -4.9687 26 8 5.3293 -6.7096 -4.4600 27 6 2.9225 -4.2031 -0.7509 28 6 1.8695 -3.6098 0.2172 29 1 -0.4850 0.8401 0.0004 30 1 -0.7197 -2.3786 -0.5856 31 1 0.1732 -1.3381 -1.7112 32 1 -0.1806 -4.3480 -1.7842 33 1 -0.4985 -3.1534 -3.0634 34 1 2.1207 -2.7032 -2.7329 35 1 1.4993 -3.9588 -3.8315 36 1 3.7142 -4.8412 -3.5192 37 1 4.7862 -9.3320 -2.6652 38 1 3.4464 -5.0213 -0.2567 39 1 3.6386 -3.4269 -1.0207 40 1 1.0469 -4.3152 0.3354 41 1 2.3314 -3.4250 1.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052464668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:24 Heat of formation + Delta-G solvation = -93.965127 kcal Electronic energy + Delta-G solvation = -30484.517652 eV Core-core repulsion = 25568.073308 eV Total energy + Delta-G solvation = -4916.444343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.75575 -48.28099 -48.24536 -45.88807 -40.19604 -37.86687 -35.42084 -34.90253 -33.10670 -32.33483 -31.67765 -30.07535 -27.81619 -26.33418 -25.00720 -23.96877 -23.67918 -22.94853 -21.27438 -20.39177 -19.55859 -19.28448 -19.14067 -18.81145 -18.35734 -17.66039 -16.87395 -16.45531 -16.20469 -15.21654 -15.12165 -15.08375 -14.97645 -14.66953 -14.64387 -14.41028 -14.37392 -14.27962 -14.05815 -13.66843 -13.43967 -13.12220 -12.92940 -12.63768 -12.56178 -12.07913 -11.54553 -11.50297 -11.32455 -10.93594 -10.86908 -10.63980 -10.45192 -10.44088 -10.29322 -10.15441 -9.88393 -9.80995 -9.67938 -9.13996 -8.43832 -6.71310 -5.81546 -3.25659 0.17016 0.93593 1.63618 2.01894 2.66696 2.77810 2.79931 3.25094 3.34541 3.42421 3.43011 3.69885 3.96825 4.06086 4.39603 4.46870 4.51425 5.01256 5.07576 5.28806 5.37375 5.52429 5.57555 5.91755 5.93967 5.95437 6.19411 6.35888 6.40263 6.50990 6.56999 6.69556 6.75071 6.81553 6.92807 7.03238 7.31518 7.38833 7.67014 7.78874 7.79743 8.43709 9.20815 9.87247 10.32060 11.25752 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.002116 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.911901 B =13226.685984 C =13603.745905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.176 3.824 11 C -0.141 4.141 12 C -0.113 4.113 13 C 0.160 3.840 14 H 0.081 0.919 15 N -0.705 5.705 16 C 0.599 3.401 17 O -0.505 6.505 18 C -0.060 4.060 19 C -0.116 4.116 20 C -0.089 4.089 21 C 0.561 3.439 22 F -0.163 7.163 23 F -0.162 7.162 24 F -0.159 7.159 25 N -0.290 5.290 26 O 0.155 5.845 27 C -0.158 4.158 28 C 0.163 3.837 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.404 0.596 37 H 0.199 0.801 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 -17.653 -10.417 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.180 4.180 12 C -0.151 4.151 13 C 0.058 3.942 14 H 0.099 0.901 15 N -0.354 5.354 16 C 0.381 3.619 17 O -0.380 6.380 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.246 4.246 21 C 0.506 3.494 22 F -0.144 7.144 23 F -0.144 7.144 24 F -0.140 7.140 25 N 0.019 4.981 26 O 0.069 5.931 27 C -0.200 4.200 28 C 0.034 3.966 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.239 0.761 37 H 0.216 0.784 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.895 -17.552 -10.796 22.859 hybrid contribution 0.594 0.452 0.042 0.748 sum 10.490 -17.099 -10.754 22.761 Atomic orbital electron populations 1.70067 1.05202 1.25447 1.54051 1.25032 0.95255 0.98342 1.00717 0.86328 0.79150 0.83855 0.77650 1.21489 1.21811 1.20485 1.19206 0.92416 0.84941 1.42331 0.91668 1.43694 1.32343 1.01853 1.53278 1.21040 0.88665 0.95562 0.89598 1.21984 0.94945 1.01092 0.99985 1.21278 0.97796 0.99099 0.96951 1.20272 0.88614 0.94923 0.90348 0.90083 1.46507 1.41815 1.10632 1.36463 1.16433 0.80431 0.82610 0.82464 1.90914 1.52342 1.63706 1.31065 1.24670 0.99937 0.94090 0.93909 1.22691 0.95136 0.97360 0.98737 1.23425 1.04592 0.95501 1.01114 1.16571 0.77206 0.80665 0.74968 1.93282 1.79142 1.77280 1.64689 1.93271 1.44189 1.90377 1.86522 1.93268 1.94765 1.75981 1.50011 1.73823 1.07646 1.00095 1.16506 1.85042 1.37691 1.34550 1.35810 1.21929 1.01104 1.00175 0.96772 1.20556 0.93813 0.88332 0.93924 0.93653 0.95579 0.90641 0.93294 0.92351 0.89753 0.92852 0.76085 0.78404 0.92715 0.91563 0.94659 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.01 55.49 0.61 -24.47 16 2 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.64 9.44 -15.06 -0.14 -6.78 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.51 2.27 -172.09 -0.39 -13.90 16 10 C 0.18 3.88 4.66 -2.94 -0.01 3.86 16 11 C -0.14 -2.36 5.71 -27.30 -0.16 -2.52 16 12 C -0.11 -1.68 5.00 -28.01 -0.14 -1.82 16 13 C 0.16 2.31 1.96 -70.98 -0.14 2.17 16 14 H 0.08 1.27 6.65 -51.93 -0.35 0.92 16 15 N -0.70 -8.18 4.88 -57.87 -0.28 -8.46 16 16 C 0.60 7.23 7.66 -12.48 -0.10 7.13 16 17 O -0.50 -7.61 16.42 5.29 0.09 -7.52 16 18 C -0.06 -0.60 7.29 -36.31 -0.26 -0.87 16 19 C -0.12 -1.05 10.65 -38.95 -0.41 -1.47 16 20 C -0.09 -0.85 6.63 -82.16 -0.54 -1.40 16 21 C 0.56 4.96 3.56 36.01 0.13 5.08 16 22 F -0.16 -1.45 17.30 2.25 0.04 -1.42 16 23 F -0.16 -1.56 17.27 2.25 0.04 -1.52 16 24 F -0.16 -1.32 17.08 2.25 0.04 -1.28 16 25 N -0.29 -3.06 12.00 33.52 0.40 -2.66 16 26 O 0.16 1.51 11.04 15.56 0.17 1.68 16 27 C -0.16 -2.59 5.20 -28.58 -0.15 -2.74 16 28 C 0.16 3.18 5.66 -4.08 -0.02 3.16 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 31 H 0.08 1.86 6.33 -51.93 -0.33 1.53 16 32 H 0.05 0.79 7.31 -51.92 -0.38 0.41 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.44 7.48 -51.93 -0.39 1.06 16 35 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.40 3.76 8.44 -40.82 -0.34 3.41 16 37 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.05 0.87 7.95 -51.93 -0.41 0.46 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 41 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -28.45 355.27 -5.68 -34.14 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.68 Total: 0.32 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.04 Total: 3.87 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.34 Total: -49.49 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: 0.26 Total: -5.84 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.12 Total: -4.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.45 -5.68 -34.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052464668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.829 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds